[ImageJ-builds] Build failed in Jenkins: fiji-windows-core #234

Fri Nov 30 07:18:44 CST 2012

See <https://qa.nest-initiative.org/job/fiji-windows-core/234/changes>

Changes:

[stephan.preibisch] Deconvolution works with CUDA now properly

[stephan.preibisch] Working on CUDA for deconvolution to address two graphic cards at once

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[...truncated 198 lines...]
Compiling 3 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Arrow_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Arrow_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Arrow_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Arrow_\src\main\java\fiji\util\ArrowOptionPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Arrow_\src\main\java\fiji\util\ArrowShape.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Arrow_\src\main\java\fiji\util\ArrowTool.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Arrow_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Auto_Threshold not up-to-date because 2 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Auto_Threshold\src\main\java\fiji\threshold\Auto_Local_Threshold.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Auto_Threshold\src\main\java\fiji\threshold\Auto_Threshold.java)
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Auto_Threshold
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Auto_Threshold\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Auto_Threshold\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Auto_Threshold\src\main\java\fiji\threshold\Auto_Local_Threshold.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Auto_Threshold\src\main\java\fiji\threshold\Auto_Threshold.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Auto_Threshold\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
BalloonSegmentation_ not up-to-date because 8 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\BalloonSegmentation_.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\balloonstructure\Balloon.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\balloonstructure\BalloonPopulation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\balloonstructure\BalloonSequence.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\utils\CenterlineSlice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\utils\Kinematics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\utils\RandPermutation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\utils\Watershed.java)
Compiling 8 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\BalloonSegmentation_.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\balloonstructure\Balloon.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\balloonstructure\BalloonPopulation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\balloonstructure\BalloonSequence.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\utils\CenterlineSlice.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\utils\Kinematics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\utils\RandPermutation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\utils\Watershed.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\BalloonSegmentation_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.pom
Parsing C:\Users\jenkins\.m2\repository\org\beanshell\beanshell\2.0b4\beanshell-2.0b4.pom
Parsing C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.pom
Skipping artifact tools (for javassist): not found
Warning: <https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools

Skipping artifact tools (for javassist): not found
Warning: <https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools

Parsing C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.pom
Parsing C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.pom
fiji-compat not up-to-date because 25 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\CheckClassVersions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\command\Command.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\command\CommandListenerPlus.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Compile_and_Run.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\FijiClassLoader.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\FijiTools.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\gui\FileDialogDecorator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\gui\JFileChooserDecorator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Headless.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\IJ1Patcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\IJHacker.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\IJ_Alt_Key_Listener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\InspectJar.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\JavassistHelper.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Main.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\MainClassForDebugging.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Memory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\MemoryProfiler.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\OtherInstance.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\PlugInInstaller.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\SampleImageLoader.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\SetIcon.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\SimpleExecuter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\User_Plugins.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\ZLibAnalyzer.java)
BeanShell_Interpreter not up-to-date because of fiji-compat
fiji-compat not up-to-date because 25 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\CheckClassVersions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\command\Command.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\command\CommandListenerPlus.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Compile_and_Run.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\FijiClassLoader.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\FijiTools.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\gui\FileDialogDecorator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\gui\JFileChooserDecorator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Headless.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\IJ1Patcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\IJHacker.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\IJ_Alt_Key_Listener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\InspectJar.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\JavassistHelper.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Main.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\MainClassForDebugging.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Memory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\MemoryProfiler.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\OtherInstance.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\PlugInInstaller.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\SampleImageLoader.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\SetIcon.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\SimpleExecuter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\User_Plugins.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\ZLibAnalyzer.java)
Compiling 25 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\CheckClassVersions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\command\Command.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\command\CommandListenerPlus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Compile_and_Run.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\FijiClassLoader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\FijiTools.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\gui\FileDialogDecorator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\gui\JFileChooserDecorator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Headless.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\IJ1Patcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\IJHacker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\IJ_Alt_Key_Listener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\InspectJar.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\JavassistHelper.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Main.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\MainClassForDebugging.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Memory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\MemoryProfiler.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\OtherInstance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\PlugInInstaller.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\SampleImageLoader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\SetIcon.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\SimpleExecuter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\User_Plugins.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\ZLibAnalyzer.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
fiji-scripting not up-to-date because 3 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\src\main\java\common\AbstractInterpreter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\src\main\java\common\RefreshScripts.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\src\main\java\common\ScriptRunner.java)
Compiling 3 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\src\main\java\common\AbstractInterpreter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\src\main\java\common\RefreshScripts.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\src\main\java\common\ScriptRunner.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\src\main\java\BSH\BSH_Interpreter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\src\main\java\BSH\Refresh_BSH_Scripts.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Parsing C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.pom
Fiji_Updater not up-to-date because 8 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Adapter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Bootstrap.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\ImageJ1UI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Main.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\StderrUI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\UI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Updater.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\UptodateCheck.java)
Bug_Submitter not up-to-date because of Fiji_Updater
Fiji_Updater not up-to-date because 8 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Adapter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Bootstrap.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\ImageJ1UI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Main.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\StderrUI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\UI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Updater.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\UptodateCheck.java)
Compiling 8 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Adapter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Bootstrap.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\ImageJ1UI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Main.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\StderrUI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\UI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Updater.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\UptodateCheck.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\src\main\java\fiji\updater\Adapter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\target\Fiji_Updater-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\src\main\java\Bug_Submitter\Bug_Submitter.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\target\Fiji_Updater-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\src\main\java\Bug_Submitter\Bug_Submitter.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
CLI_ not up-to-date because 9 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\CLI_.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\CustomFileFilter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\ImageFileFilter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\MacroRecord.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\OpenDirectory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\Refresh_Macros.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\Screenshot.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\Slide_Show.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\TraceError.java)
Compiling 9 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\CLI_.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\CustomFileFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\ImageFileFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\MacroRecord.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\OpenDirectory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\Refresh_Macros.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\Screenshot.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\Slide_Show.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\TraceError.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.pom
CPU_Meter not up-to-date because 1 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\CPU_Meter\src\main\java\CPU_Meter.java)
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\CPU_Meter
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\CPU_Meter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\CPU_Meter\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\CPU_Meter\src\main\java\CPU_Meter.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\CPU_Meter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Calculator_Plus not up-to-date because 1 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Calculator_Plus\src\main\java\Calculator_Plus.java)
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Calculator_Plus
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Calculator_Plus\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Calculator_Plus\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Calculator_Plus\src\main\java\Calculator_Plus.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Calculator_Plus\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Parsing C:\Users\jenkins\.m2\repository\org\clojure\clojure\1.3.0\clojure-1.3.0.pom
Parsing C:\Users\jenkins\.m2\repository\org\sonatype\oss\oss-parent\5\oss-parent-5.pom
Clojure_Interpreter not up-to-date because 2 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\src\main\java\Clojure\Clojure_Interpreter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\src\main\java\Clojure\Refresh_Clojure_Scripts.java)
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\Users\jenkins\.m2\repository\org\clojure\clojure\1.3.0\clojure-1.3.0.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\src\main\java\Clojure\Clojure_Interpreter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\src\main\java\Clojure\Refresh_Clojure_Scripts.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\Users\jenkins\.m2\repository\org\clojure\clojure\1.3.0\clojure-1.3.0.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\src\main\java\Clojure\Clojure_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-algorithms\2.0.0-SNAPSHOT\imglib2-algorithms-2.0.0-20120703.224255-399.pom
Parsing C:\Users\jenkins\.m2\repository\net\imglib2\pom-imglib2-algorithms\2.0.0-SNAPSHOT\pom-imglib2-algorithms-2.0.0-20120703.224255-399.pom
Parsing C:\Users\jenkins\.m2\repository\net\imglib2\pom-imglib2\2.0.0-SNAPSHOT\pom-imglib2-2.0.0-20120704.052716-405.pom
Parsing C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.pom
Parsing C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.pom
Parsing C:\Users\jenkins\.m2\repository\com\itextpdf\itextpdf\5.1.1\itextpdf-5.1.1.pom
Parsing C:\Users\jenkins\.m2\repository\com\itextpdf\itext-parent\1.0.0\itext-parent-1.0.0.pom
Colocalisation_Analysis not up-to-date because 42 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\Accumulator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\Algorithm.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\AutoThresholdRegression.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\CostesSignificanceTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\Histogram2D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\InputCheck.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\LiHistogram2D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\LiICQ.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\MandersColocalization.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\MissingPreconditionException.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\PearsonsCorrelation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\SpearmanRankCorrelation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\Colocalisation_Test.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\Colocalisation_Threshold.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\ColocImgLibGadgets.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\Coloc_2.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\DataContainer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\MaskFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\Statistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\ThresholdMode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\algorithm\math\ImageStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\predicate\MaskPredicate.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\predicate\Predicate.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\PredicateCursor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\TwinCursor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\EasyDisplay.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\NamedContainer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\PDFWriter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\ResultHandler.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\SingleWindowDisplay.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\ValueResult.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\Warning.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\ColocalisationTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\CostesSignificanceTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\ImprovedNoise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\LiICQTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\MandersColocalizationTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\MaskAndRoiTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\PearsonsCorrelationTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\SpearmanRankTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\StatisticsTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\TestImageAccessor.java)
Compiling 42 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-algorithms\2.0.0-SNAPSHOT\imglib2-algorithms-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\com\itextpdf\itextpdf\5.1.1\itextpdf-5.1.1.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\Accumulator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\Algorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\AutoThresholdRegression.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\CostesSignificanceTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\Histogram2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\InputCheck.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\LiHistogram2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\LiICQ.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\MandersColocalization.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\MissingPreconditionException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\PearsonsCorrelation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\SpearmanRankCorrelation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\Colocalisation_Test.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\Colocalisation_Threshold.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\ColocImgLibGadgets.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\Coloc_2.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\DataContainer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\MaskFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\Statistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\ThresholdMode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\algorithm\math\ImageStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\predicate\MaskPredicate.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\predicate\Predicate.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\PredicateCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\TwinCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\EasyDisplay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\NamedContainer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\PDFWriter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\ResultHandler.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\SingleWindowDisplay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\ValueResult.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\Warning.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\ColocalisationTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\CostesSignificanceTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\ImprovedNoise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\LiICQTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\MandersColocalizationTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\MaskAndRoiTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\PearsonsCorrelationTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\SpearmanRankTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\StatisticsTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\TestImageAccessor.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-algorithms\2.0.0-SNAPSHOT\imglib2-algorithms-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\com\itextpdf\itextpdf\5.1.1\itextpdf-5.1.1.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\SingleWindowDisplay.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Color_Histogram not up-to-date because 1 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram\src\main\java\ColorHistogram_.java)
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram\src\main\java\ColorHistogram_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram\src\main\java\ColorHistogram_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Color_Inspector_3D not up-to-date because 4 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\src\main\java\ColorKLT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\src\main\java\Color_Inspector_3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\src\main\java\KLT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\src\main\java\SymMat.java)
Compiling 4 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\src\main\java\ColorKLT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\src\main\java\Color_Inspector_3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\src\main\java\KLT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\src\main\java\SymMat.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\src\main\java\Color_Inspector_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Colour_Deconvolution not up-to-date because 1 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Colour_Deconvolution\src\main\java\Colour_Deconvolution.java)
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Colour_Deconvolution
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colour_Deconvolution\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colour_Deconvolution\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colour_Deconvolution\src\main\java\Colour_Deconvolution.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Colour_Deconvolution\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
CorrectBleach_ not up-to-date because 8 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\emblcmci\BleachCorrection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\emblcmci\BleachCorrection_ExpoFit.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\emblcmci\BleachCorrection_MH.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\emblcmci\BleachCorrection_SimpleRatio.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\histogram2\HistogramMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\histogram2\HistogramPlot.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\histogram2\PiecewiseLinearCdf.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\histogram2\Util.java)
Compiling 8 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\emblcmci\BleachCorrection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\emblcmci\BleachCorrection_ExpoFit.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\emblcmci\BleachCorrection_MH.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\emblcmci\BleachCorrection_SimpleRatio.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\histogram2\HistogramMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\histogram2\HistogramPlot.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\histogram2\PiecewiseLinearCdf.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\src\main\java\histogram2\Util.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Parsing C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.pom
Parsing C:\Users\jenkins\.m2\repository\loci\loci-common\4.5-SNAPSHOT\loci-common-4.5-20121116.234435-24.pom
Parsing C:\Users\jenkins\.m2\repository\loci\pom-scifio\4.5-SNAPSHOT\pom-scifio-4.5-20121116.234116-24.pom
Parsing C:\Users\jenkins\.m2\repository\loci\loci-legacy\4.5-SNAPSHOT\loci-legacy-4.5-20121116.234224-18.pom
Parsing C:\Users\jenkins\.m2\repository\loci\scifio-devel\4.5-SNAPSHOT\scifio-devel-4.5-20121116.234211-18.pom
Parsing C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.pom
Parsing C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.pom
Parsing C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-parent\1.5.10\slf4j-parent-1.5.10.pom
Parsing C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-log4j12\1.5.10\slf4j-log4j12-1.5.10.pom
Parsing C:\Users\jenkins\.m2\repository\xalan\serializer\2.7.1\serializer-2.7.1.pom
Parsing C:\Users\jenkins\.m2\repository\org\apache\apache\4\apache-4.pom
Parsing C:\Users\jenkins\.m2\repository\xml-apis\xml-apis\1.3.04\xml-apis-1.3.04.pom
Parsing C:\Users\jenkins\.m2\repository\xalan\xalan\2.7.1\xalan-2.7.1.pom
Parsing C:\Users\jenkins\.m2\repository\loci\ome-xml\4.5-SNAPSHOT\ome-xml-4.5-20121116.234257-24.pom
Parsing C:\Users\jenkins\.m2\repository\loci\scifio\4.5-SNAPSHOT\scifio-4.5-20121116.234324-24.pom
Parsing C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.5-SNAPSHOT\jai_imageio-4.5-20121116.234141-24.pom
Parsing C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.5-SNAPSHOT\lwf-stubs-4.5-20121116.234310-24.pom
Parsing C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.pom
Parsing C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.pom
Parsing C:\Users\jenkins\.m2\repository\org\jfree\jcommon\1.0.17\jcommon-1.0.17.pom
Parsing C:\Users\jenkins\.m2\repository\org\sonatype\oss\oss-parent\7\oss-parent-7.pom
Parsing C:\Users\jenkins\.m2\repository\org\jfree\jfreechart\1.0.14\jfreechart-1.0.14.pom
Parsing C:\Users\jenkins\.m2\repository\javax\servlet\servlet-api\2.5\servlet-api-2.5.pom
Parsing C:\Users\jenkins\.m2\repository\com\lowagie\itext\2.1.5\itext-2.1.5.pom
Parsing C:\Users\jenkins\.m2\repository\bouncycastle\bcmail-jdk14\138\bcmail-jdk14-138.pom
Parsing C:\Users\jenkins\.m2\repository\bouncycastle\bcprov-jdk14\138\bcprov-jdk14-138.pom
Parsing C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.pom
Parsing C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.pom
Parsing C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.pom
Parsing C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.5-SNAPSHOT\loci_plugins-4.5-20121116.234447-24.pom
Parsing C:\Users\jenkins\.m2\repository\loci\bio-formats\4.5-SNAPSHOT\bio-formats-4.5-20121116.234419-24.pom
Parsing C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.5-SNAPSHOT\mdbtools-java-4.5-20121116.234159-24.pom
Parsing C:\Users\jenkins\.m2\repository\loci\metakit\4.5-SNAPSHOT\metakit-4.5-20121116.234406-24.pom
Parsing C:\Users\jenkins\.m2\repository\loci\poi-loci\4.5-SNAPSHOT\poi-loci-4.5-20121116.234240-24.pom
Parsing C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.pom
Parsing C:\Users\jenkins\.m2\repository\org\apache\commons\commons-parent\5\commons-parent-5.pom
Parsing C:\Users\jenkins\.m2\repository\edu\ucar\netcdf\4.0.03\netcdf-4.0.03.pom
Trying to download http://dev.loci.wisc.edu/maven2/releases/net/imagej/ij/maven-metadata.xml.sha1
Downloading http://dev.loci.wisc.edu/maven2/releases/net/imagej/ij/maven-metadata.xml.sha1 to C:\Users\jenkins\.m2\repository\net\imagej\ij\maven-metadata-version.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/releases/net/imagej/ij/maven-metadata.xml
Checking for new version of ij
Downloading http://dev.loci.wisc.edu/maven2/releases/net/imagej/ij/maven-metadata.xml to C:\Users\jenkins\.m2\repository\net\imagej\ij\maven-metadata-version.xml
Fiji_Plugins not up-to-date because 32 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta_Clipboard.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\denoise\ROF_Denoise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Linear_Gradient.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Radial_Gradient.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\AreaCalculations.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\Shape_Index_Map.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\help\Context_Help.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\EDT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\SEDT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Binary_to_Point_Selection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Rounded_Rectangle.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Select_Bounding_Box.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\CompositeConverter2.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Dynamic_Reslice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Hyperstack_rearranger.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Radial_Reslice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Circle_Fitter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\CurrentSlice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\DistanceComparator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Fiji_Uploader.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\KDTree.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NearestNeighborSearch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NNearestNeighborSearch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Leaf.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Node.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\NonLeaf.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\SimpleNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\RadiusNeighborSearch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Recent_Commands.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\TestKDTree.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\Retinex_.java)
Descriptor_based_registration not up-to-date because of Fiji_Plugins
Fiji_Plugins not up-to-date because 32 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta_Clipboard.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\denoise\ROF_Denoise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Linear_Gradient.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Radial_Gradient.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\AreaCalculations.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\Shape_Index_Map.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\help\Context_Help.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\EDT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\SEDT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Binary_to_Point_Selection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Rounded_Rectangle.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Select_Bounding_Box.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\CompositeConverter2.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Dynamic_Reslice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Hyperstack_rearranger.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Radial_Reslice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Circle_Fitter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\CurrentSlice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\DistanceComparator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Fiji_Uploader.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\KDTree.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NearestNeighborSearch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NNearestNeighborSearch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Leaf.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Node.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\NonLeaf.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\SimpleNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\RadiusNeighborSearch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Recent_Commands.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\TestKDTree.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\Retinex_.java)
Compiling 32 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta_Clipboard.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\denoise\ROF_Denoise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Linear_Gradient.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Radial_Gradient.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\AreaCalculations.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\Shape_Index_Map.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\help\Context_Help.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\EDT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\SEDT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Binary_to_Point_Selection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Rounded_Rectangle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Select_Bounding_Box.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\CompositeConverter2.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Dynamic_Reslice.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Hyperstack_rearranger.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Radial_Reslice.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Circle_Fitter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\CurrentSlice.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\DistanceComparator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Fiji_Uploader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\KDTree.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NearestNeighborSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NNearestNeighborSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Leaf.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Node.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\NonLeaf.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\SimpleNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\RadiusNeighborSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Recent_Commands.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\TestKDTree.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\Retinex_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\Shape_Index_Map.java:17: warning: unmappable character for encoding Cp1252
 * curvature scales,â€? Image Vision Comput, vol. 10, no. 8,
                      ^
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\Retinex_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 warning
SPIM_Opener not up-to-date because 16 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Check_Directories.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Combine_SPIM_Projects.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Count_Files.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\DoubleSlider.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MaximumProjector.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MinimumProjector.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\OpenerGenericDialog.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Projector.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Rename.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMExperiment.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMRegularStack.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMStack.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMVirtualStack.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIM_Opener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\XMLReader.java)
Compiling 16 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Check_Directories.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Combine_SPIM_Projects.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Count_Files.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\DoubleSlider.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MaximumProjector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MinimumProjector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\OpenerGenericDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Projector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Rename.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMExperiment.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMRegularStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMVirtualStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIM_Opener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\XMLReader.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
SPIM_Registration not up-to-date because 145 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Apply_External_Transformation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Bead_Registration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Multi_View_Deconvolution.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Multi_View_Fusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Regtest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\FileOpenMenuEntry.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\GraphFrame.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\MouseListenerTimelapse.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\RegistrationStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\TimeLapseDisplay.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\ICP.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\PointMatchIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\SimplePointMatchIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\AbstractPointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\exception\NoSuitablePointsException.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LinkedPoint.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LocalCoordinateSystemPointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Matcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorSubsetMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Quaternion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SimpleMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SubsetMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\FixedModel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\RigidModelOld3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantAffineModel3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantFixedModel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantModel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel2D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantSimilarityModel3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\ModelPointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\LinearDistance.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\ManhattanDistance.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SimilarityMeasure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SquareDistance.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\SimplePointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\PointNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\TestPointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\VirtualPointNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\ClusterReconstruction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\Blending.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimple.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimpleFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightenerFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\Entropy.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\EntropyFloatArray3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFast.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFastFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\FusionControl.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContent.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContentFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightenerFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalell.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalellMaxWeight.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequential.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequentialDifferentOutput.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\PreDeconvolutionFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\SPIMImageFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserException.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserGeneral.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserObject.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserSPIM.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ImgLibSaver.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\IOFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ParsePattern.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ProgramConfiguration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\SPIMConfiguration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\TextFileAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\XMLFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\Java3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\PointMatchGeneric.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\SketchTikZFileObject.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationPhaseCorrelation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationSPIM.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileSPIM.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\ExtractPSF.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonFFT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonMultiViewDeconvolution.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\AdjustInput.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\BayesMVDeconvolution.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Block.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\CUDAConvolution.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\CUDATools.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Deconvolver.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRInput.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\preprocessing\AutomaticAngleSetup.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\Reconstruction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\Bead.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadRegistration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadSegmentation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadStructure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatisticsImpl.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorPairWise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\DoGMaximum.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\LaPlaceFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\RejectStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\AbstractDetection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystem3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystemSecure3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CorrespondenceExtraction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\ModelBased3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\SparseCorrespondenceExtraction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\Detection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionRegistration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionSegmentation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionStructure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionView.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleiConfiguration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\Nucleus.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusStructure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ComponentProperties.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ConnectedComponent.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewDataBeads.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewStructure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\segmentation\InteractiveDoG.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\simulation\SimulateBeadImage.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\FastMatrix.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\FastMatrixN.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\JacobiDouble.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Line.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Plane.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Point3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Triangle.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\BeadTransformGroup.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Motion3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\PreviewRegistration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Viewer3dFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationSketchTikZ.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizeBeads.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\util\TransformUtils.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\MultiChannel_SPIM_Registration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIMRegistrationAbstract.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration_File.java)
Compiling 145 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration
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C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\exception\NoSuitablePointsException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LinkedPoint.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LocalCoordinateSystemPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Matcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorSubsetMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Quaternion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SimpleMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SubsetMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\FixedModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\RigidModelOld3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantAffineModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantFixedModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantSimilarityModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\ModelPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\LinearDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\ManhattanDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SimilarityMeasure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SquareDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\SimplePointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\PointNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\TestPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\VirtualPointNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\ClusterReconstruction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\Blending.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimple.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimpleFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightenerFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\Entropy.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\EntropyFloatArray3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFast.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFastFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\FusionControl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContentFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightenerFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalell.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalellMaxWeight.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequential.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequentialDifferentOutput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\PreDeconvolutionFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\SPIMImageFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserGeneral.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ImgLibSaver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\IOFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ParsePattern.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ProgramConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\SPIMConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\TextFileAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\XMLFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\Java3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\PointMatchGeneric.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\SketchTikZFileObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationPhaseCorrelation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\ExtractPSF.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonFFT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonMultiViewDeconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\AdjustInput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\BayesMVDeconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Block.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\CUDAConvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\CUDATools.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Deconvolver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRInput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\preprocessing\AutomaticAngleSetup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\Reconstruction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\Bead.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatisticsImpl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorPairWise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\DoGMaximum.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\LaPlaceFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\RejectStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\AbstractDetection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystem3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystemSecure3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CorrespondenceExtraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\ModelBased3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\SparseCorrespondenceExtraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\Detection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleiConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\Nucleus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ComponentProperties.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ConnectedComponent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewDataBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\segmentation\InteractiveDoG.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\simulation\SimulateBeadImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\FastMatrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\FastMatrixN.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\JacobiDouble.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Line.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Plane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Point3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Triangle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\BeadTransformGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Motion3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\PreviewRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Viewer3dFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationSketchTikZ.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizeBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\util\TransformUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\MultiChannel_SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIMRegistrationAbstract.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration_File.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcmail-jdk14\138\bcmail-jdk14-138.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcprov-jdk14\138\bcprov-jdk14-138.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47f\ij-1.47f.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\com\lowagie\itext\2.1.5\itext-2.1.5.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.5-SNAPSHOT\jai_imageio-4.5-20121116.234141-24.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\org\jfree\jcommon\1.0.17\jcommon-1.0.17.jar;C:\Users\jenkins\.m2\repository\org\jfree\jfreechart\1.0.14\jfreechart-1.0.14.jar;C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.5-SNAPSHOT\loci-common-4.5-20121116.234435-24.jar;C:\Users\jenkins\.m2\repository\loci\loci-legacy\4.5-SNAPSHOT\loci-legacy-4.5-20121116.234224-18.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.5-SNAPSHOT\lwf-stubs-4.5-20121116.234310-24.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.5-SNAPSHOT\ome-xml-4.5-20121116.234257-24.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.5-SNAPSHOT\scifio-4.5-20121116.234324-24.jar;C:\Users\jenkins\.m2\repository\loci\scifio-devel\4.5-SNAPSHOT\scifio-devel-4.5-20121116.234211-18.jar;C:\Users\jenkins\.m2\repository\javax\servlet\servlet-api\2.5\servlet-api-2.5.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar;C:\Users\jenkins\.m2\repository\xml-apis\xml-apis\1.3.04\xml-apis-1.3.04.jar
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:271: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					LRFFTThreads.convolve1BlockCPU( blocks[ i ], i, image, result, block, fftConvolution1 );
					^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:318: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
				LRFFTThreads.convolve1BlockCUDA( blocks[ i ], i, device0, image, result, block, kernel1, blockSize );
				^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:338: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					threads[ i ] = LRFFTThreads.getCPUThread1( ai, blocks, blockSize, factory, image, result, fftConvolution1 );
					               ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:340: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					threads[ i ] = LRFFTThreads.getCUDAThread1( ai, blocks, blockSize, factory, image, result, deviceList[ i ], kernel1 );
					               ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:388: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					LRFFTThreads.convolve2BlockCPU( blocks[ i ], image, result, block, fftConvolution2 );
					^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:419: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
				LRFFTThreads.convolve2BlockCUDA( blocks[ i ], device0, image, result, block, block, blockSize );
				^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:436: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					threads[ i ] = LRFFTThreads.getCPUThread2( ai, blocks, blockSize, factory, image, result, fftConvolution2 );
					               ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:438: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					threads[ i ] = LRFFTThreads.getCUDAThread2( ai, blocks, blockSize, factory, image, result, deviceList[ i ], kernel2 );
					               ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
8 errors
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
	at fiji.build.minimaven.POM.build(POM.java:256)
	at fiji.build.minimaven.POM.build(POM.java:210)
	at fiji.build.minimaven.POM.buildJar(POM.java:197)
	at fiji.build.SubFake.buildPOM(SubFake.java:273)
	at fiji.build.SubFake.buildPOM(SubFake.java:255)
	at fiji.build.SubFake.action(SubFake.java:223)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:263)
	at fiji.build.Fake.main(Fake.java:60)
Compile error: 1
	in rule (fiji.build.SubFake) pom-fiji-plugins <- src-plugins/
	in rule (fiji.build.All) all <- ImageJ fiji pom-fiji-plugins
Build step 'Execute shell' marked build as failure