[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #1130

Fri Nov 30 07:17:32 CST 2012

See <http://jenkins.imagej.net/job/Fiji-minimal/1130/>

------------------------------------------
[...truncated 531 lines...]
	if (Costes||rBlocks) strPSF =  df3.format(psf*pixelSize*2)+ " ??m ("+df0.format(psf*2)+" pix.)" ;
	                                                               ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:672: warning: unmappable character for encoding ASCII
		"\t" +df3.format(r2mean) + "??"+ df3.format(r2sd)+
		                            ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:672: warning: unmappable character for encoding ASCII
		"\t" +df3.format(r2mean) + "??"+ df3.format(r2sd)+
		                             ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:695: warning: unmappable character for encoding ASCII
		//[i.e. E(ch1if ch2>0) ?? E(ch1total)]
		                       ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:695: warning: unmappable character for encoding ASCII
		//[i.e. E(ch1if ch2>0) ?? E(ch1total)]
		                        ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:702: warning: unmappable character for encoding ASCII
		//[i.e. E(ch1 if ch2>ch2threshold) ?? (Ech1total)]
		                                   ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:702: warning: unmappable character for encoding ASCII
		//[i.e. E(ch1 if ch2>ch2threshold) ?? (Ech1total)]
		                                    ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:707: warning: unmappable character for encoding ASCII
		//[i.e. E(ch1>ch1threshold) ?? E(ch1total)]
		                            ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:707: warning: unmappable character for encoding ASCII
		//[i.e. E(ch1>ch1threshold) ?? E(ch1total)]
		                             ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
14 warnings
Color_Histogram not up-to-date because 1 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java)
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Histogram
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Histogram/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Histogram/target/classes, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java]
using the class path: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Histogram/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Color_Inspector_3D not up-to-date because 4 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/src/main/java/KLT.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/src/main/java/SymMat.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/src/main/java/ColorKLT.java)
Compiling 4 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/target/classes, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/src/main/java/KLT.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/src/main/java/SymMat.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/src/main/java/ColorKLT.java]
using the class path: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Colour_Deconvolution not up-to-date because 1 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colour_Deconvolution/src/main/java/Colour_Deconvolution.java)
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colour_Deconvolution
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colour_Deconvolution/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colour_Deconvolution/target/classes, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colour_Deconvolution/src/main/java/Colour_Deconvolution.java]
using the class path: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colour_Deconvolution/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
CorrectBleach_ not up-to-date because 8 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramMatcher.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramPlot.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/histogram2/Util.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/histogram2/PiecewiseLinearCdf.java)
Compiling 8 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/target/classes, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramMatcher.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramPlot.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/histogram2/Util.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/histogram2/PiecewiseLinearCdf.java]
using the class path: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java:8: warning: unmappable character for encoding ASCII
 * Copyright ?? 2010 Kota Miura
             ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java:8: warning: unmappable character for encoding ASCII
 * Copyright ?? 2010 Kota Miura
              ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java:13: warning: unmappable character for encoding ASCII
 * Copyright ?? 2004, 2005, 2010 Jens Rietdorf, Kota Miura
             ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java:13: warning: unmappable character for encoding ASCII
 * Copyright ?? 2004, 2005, 2010 Jens Rietdorf, Kota Miura
              ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java:15: warning: unmappable character for encoding ASCII
 * Copyright ?? 2010 Kota Miura
             ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java:15: warning: unmappable character for encoding ASCII
 * Copyright ?? 2010 Kota Miura
              ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java:22: warning: unmappable character for encoding ASCII
 * Copyright ?? 2010 Kota Miura
             ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java:22: warning: unmappable character for encoding ASCII
 * Copyright ?? 2010 Kota Miura
              ^
8 warnings
Parsing /data/devel/jenkins/.m2/repository/mpicbg/imglib-io/2.0.0-SNAPSHOT/imglib-io-2.0.0-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/loci/loci-common/4.5-SNAPSHOT/loci-common-4.5-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/loci/pom-scifio/4.5-SNAPSHOT/pom-scifio-4.5-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/loci/loci-legacy/4.5-SNAPSHOT/loci-legacy-4.5-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/loci/scifio-devel/4.5-SNAPSHOT/scifio-devel-4.5-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/log4j/log4j/1.2.14/log4j-1.2.14.pom
Parsing /data/devel/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.pom
Parsing /data/devel/jenkins/.m2/repository/org/slf4j/slf4j-parent/1.5.10/slf4j-parent-1.5.10.pom
Parsing /data/devel/jenkins/.m2/repository/org/slf4j/slf4j-log4j12/1.5.10/slf4j-log4j12-1.5.10.pom
Parsing /data/devel/jenkins/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.pom
Parsing /data/devel/jenkins/.m2/repository/org/apache/apache/4/apache-4.pom
Parsing /data/devel/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.pom
Parsing /data/devel/jenkins/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.pom
Parsing /data/devel/jenkins/.m2/repository/loci/ome-xml/4.5-SNAPSHOT/ome-xml-4.5-SNAPSHOT.pom
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Parsing /data/devel/jenkins/.m2/repository/loci/jai_imageio/4.5-SNAPSHOT/jai_imageio-4.5-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/loci/lwf-stubs/4.5-SNAPSHOT/lwf-stubs-4.5-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.pom
Parsing /data/devel/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.pom
Parsing /data/devel/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.pom
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Parsing /data/devel/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.pom
Parsing /data/devel/jenkins/.m2/repository/loci/loci_plugins/4.5-SNAPSHOT/loci_plugins-4.5-20121116.212456-23.pom
Parsing /data/devel/jenkins/.m2/repository/loci/bio-formats/4.5-SNAPSHOT/bio-formats-4.5-20121116.212424-23.pom
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Parsing /data/devel/jenkins/.m2/repository/org/apache/commons/commons-parent/5/commons-parent-5.pom
Parsing /data/devel/jenkins/.m2/repository/edu/ucar/netcdf/4.0.03/netcdf-4.0.03.pom
Fiji_Plugins not up-to-date because 32 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Rounded_Rectangle.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Binary_to_Point_Selection.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Select_Bounding_Box.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta_Clipboard.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Linear_Gradient.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Radial_Gradient.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/AreaCalculations.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/help/Context_Help.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/CompositeConverter2.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Radial_Reslice.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Hyperstack_rearranger.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/denoise/ROF_Denoise.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/RadiusNeighborSearch.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Fiji_Uploader.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/KDTree.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Circle_Fitter.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NNearestNeighborSearch.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/TestKDTree.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/CurrentSlice.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/DistanceComparator.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/NonLeaf.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Leaf.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Node.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/SimpleNode.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Recent_Commands.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NearestNeighborSearch.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/EDT.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/SEDT.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java)
Descriptor_based_registration not up-to-date because of Fiji_Plugins
Fiji_Plugins not up-to-date because 32 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Rounded_Rectangle.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Binary_to_Point_Selection.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Select_Bounding_Box.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta_Clipboard.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Linear_Gradient.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Radial_Gradient.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/AreaCalculations.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/help/Context_Help.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/CompositeConverter2.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Radial_Reslice.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Hyperstack_rearranger.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/denoise/ROF_Denoise.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/RadiusNeighborSearch.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Fiji_Uploader.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/KDTree.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Circle_Fitter.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NNearestNeighborSearch.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/TestKDTree.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/CurrentSlice.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/DistanceComparator.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/NonLeaf.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Leaf.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Node.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/SimpleNode.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Recent_Commands.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NearestNeighborSearch.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/EDT.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/SEDT.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java)
Compiling 32 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Jama/target/Jama-1.0.2.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/target/classes, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Rounded_Rectangle.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Binary_to_Point_Selection.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Select_Bounding_Box.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta_Clipboard.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Linear_Gradient.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Radial_Gradient.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/AreaCalculations.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/help/Context_Help.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/CompositeConverter2.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Radial_Reslice.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Hyperstack_rearranger.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/denoise/ROF_Denoise.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/RadiusNeighborSearch.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Fiji_Uploader.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/KDTree.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Circle_Fitter.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NNearestNeighborSearch.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/TestKDTree.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/CurrentSlice.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/DistanceComparator.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/NonLeaf.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Leaf.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Node.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/SimpleNode.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Recent_Commands.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NearestNeighborSearch.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/EDT.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/SEDT.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java]
using the class path: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Jama/target/Jama-1.0.2.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java:16: warning: unmappable character for encoding ASCII
 * J Koenderink and A van Doorn, ???Surface shape and
                                 ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java:16: warning: unmappable character for encoding ASCII
 * J Koenderink and A van Doorn, ???Surface shape and
                                  ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java:16: warning: unmappable character for encoding ASCII
 * J Koenderink and A van Doorn, ???Surface shape and
                                   ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java:17: warning: unmappable character for encoding ASCII
 * curvature scales,??? Image Vision Comput, vol. 10, no. 8,
                    ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java:17: warning: unmappable character for encoding ASCII
 * curvature scales,??? Image Vision Comput, vol. 10, no. 8,
                     ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java:17: warning: unmappable character for encoding ASCII
 * curvature scales,??? Image Vision Comput, vol. 10, no. 8,
                      ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java:18: warning: unmappable character for encoding ASCII
 * pp. 557???565, 1992
          ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java:18: warning: unmappable character for encoding ASCII
 * pp. 557???565, 1992
           ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java:18: warning: unmappable character for encoding ASCII
 * pp. 557???565, 1992
            ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java:78: warning: unmappable character for encoding ASCII
	 * Is set to true, then rotate the destination by 90??.
	                                                    ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java:78: warning: unmappable character for encoding ASCII
	 * Is set to true, then rotate the destination by 90??.
	                                                     ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java:724: warning: unmappable character for encoding ASCII
	 * will be rotated 90??.
	                     ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java:724: warning: unmappable character for encoding ASCII
	 * will be rotated 90??.
	                      ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java:732: warning: unmappable character for encoding ASCII
	 * will be be rotated 90??. Cannot be changed after the start() method has been
	                        ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java:732: warning: unmappable character for encoding ASCII
	 * will be be rotated 90??. Cannot be changed after the start() method has been
	                         ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/denoise/ROF_Denoise.java:23: warning: unmappable character for encoding ASCII
 * Based on the Matlab code by Philippe Magiera & Carl L??ndahl:
                                                        ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/fiji/denoise/ROF_Denoise.java:23: warning: unmappable character for encoding ASCII
 * Based on the Matlab code by Philippe Magiera & Carl L??ndahl:
                                                         ^
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
17 warnings
SPIM_Opener not up-to-date because 16 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/OpenerGenericDialog.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMVirtualStack.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/Count_Files.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/Combine_SPIM_Projects.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIM_Opener.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/DoubleSlider.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/XMLReader.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMStack.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/MaximumProjector.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMRegularStack.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMExperiment.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/Check_Directories.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/Rename.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/Projector.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/MinimumProjector.java)
Compiling 16 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/target/classes, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/OpenerGenericDialog.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMVirtualStack.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/Count_Files.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/Combine_SPIM_Projects.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIM_Opener.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/DoubleSlider.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/XMLReader.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMStack.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/MaximumProjector.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMRegularStack.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMExperiment.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/Check_Directories.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/Rename.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/Projector.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/MinimumProjector.java]
using the class path: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
SPIM_Registration not up-to-date because 145 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/SPIMRegistrationAbstract.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Apply_External_Transformation.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/MouseListenerTimelapse.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/RegistrationStatistics.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/FileOpenMenuEntry.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/TimeLapseDisplay.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/GraphFrame.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Regtest.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Bead_Registration.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Multi_View_Fusion.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Multi_View_Deconvolution.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/SPIM_Registration_File.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/SPIM_Registration.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/AbstractPointDescriptor.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/SquareDistance.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/SimilarityMeasure.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/LinearDistance.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/ManhattanDistance.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/exception/NoSuitablePointsException.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LocalCoordinateSystemPointDescriptor.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/SimplePointDescriptor.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/SimpleMatcher.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/Quaternion.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/ModelPriorSubsetMatcher.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/Matcher.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/SubsetMatcher.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/ModelPriorMatcher.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/test/VirtualPointNode.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/test/TestPointDescriptor.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/test/PointNode.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LinkedPoint.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/ModelPointDescriptor.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/FixedModel.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantSimilarityModel3D.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantFixedModel.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantRigidModel3D.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/RigidModelOld3D.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantAffineModel3D.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantRigidModel2D.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantModel.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/simulation/SimulateBeadImage.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/ClusterReconstruction.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution/LucyRichardsonFFT.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution/ExtractPSF.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution/LucyRichardsonMultiViewDeconvolution.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/Block.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/BayesMVDeconvolution.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/CUDATools.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/Deconvolver.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/CUDAConvolution.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/AdjustInput.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRInput.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/preprocessing/AutomaticAngleSetup.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/XMLFunctions.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/TextFileAccess.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/IOFunctions.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserGeneral.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserException.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserObject.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ImgLibSaver.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/SPIMConfiguration.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ParsePattern.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ProgramConfiguration.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserSPIM.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/TileConfigurationPhaseCorrelation.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/PointMatchGeneric.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/TileSPIM.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/TileConfigurationSPIM.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/Java3d.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/SketchTikZFileObject.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizationSketchTikZ.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizationFunctions.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizeBeads.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/Motion3D.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/BeadTransformGroup.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/Viewer3dFunctions.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/PreviewRegistration.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/CoordSystem3d.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/CoordSystemSecure3d.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/SparseCorrespondenceExtraction.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/ModelBased3d.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/CorrespondenceExtraction.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionView.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/AbstractDetection.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionSegmentation.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionStructure.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionIdentification.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionRegistration.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/Detection.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/ViewErrorPairWise.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/GlobalErrorStatisticsImpl.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/GlobalErrorStatistics.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/ViewErrorStatistics.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadSegmentation.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadRegistration.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadIdentification.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/Bead.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadStructure.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/RejectStatistics.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/LaPlaceFunctions.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/be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MatrixN.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Plane.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Line.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Point3d.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/util/TransformUtils.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/ICP.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/PointMatchIdentification.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/SimplePointMatchIdentification.java/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/MultiChannel_SPIM_Registration.java)
Compiling 145 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration
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/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/LaPlaceFunctions.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/DoGMaximum.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/ViewStructure.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/threshold/ConnectedComponent.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/threshold/ComponentProperties.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/segmentation/NucleusStructure.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/segmentation/Nucleus.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/segmentation/NucleusIdentification.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/segmentation/NucleiConfiguration.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/ViewDataBeads.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/Reconstruction.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/GaussContent.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/MappingFusionSequential.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/MappingFusionParalellMaxWeight.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/SPIMImageFusion.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/IsolatedPixelWeightenerFactory.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/EntropyFastFactory.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/IsolatedPixelWeightener.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/entropy/EntropyFloatArray3D.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/entropy/Entropy.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/CombinedPixelWeightenerFactory.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/GaussContentFactory.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/EntropyFast.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/BlendingFactory.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/MappingFusionParalell.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/BlendingSimpleFactory.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/BlendingSimple.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/Blending.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/MappingFusionSequentialDifferentOutput.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/FusionControl.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/CombinedPixelWeightener.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/PreDeconvolutionFusion.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/segmentation/InteractiveDoG.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/FastMatrix.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/JacobiDouble.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Triangle.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/FastMatrixN.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Plane.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Line.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Point3d.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/util/TransformUtils.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/ICP.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/PointMatchIdentification.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/SimplePointMatchIdentification.java, /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/MultiChannel_SPIM_Registration.java]
using the class path: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/target/classes:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Plugins/target/Fiji_Plugins-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Jama/target/Jama-1.0.2.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/target/SPIM_Opener-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar:/data/devel/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-io/2.0.0-SNAPSHOT/imglib-io-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/data/devel/jenkins/.m2/repository/loci/jai_imageio/4.5-SNAPSHOT/jai_imageio-4.5-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar:/data/devel/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.jar:/data/devel/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.jar:/data/devel/jenkins/.m2/repository/net/java/dev/jna/jna/3.2.7/jna-3.2.7.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/.m2/repository/loci/loci-common/4.5-SNAPSHOT/loci-common-4.5-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/loci/loci-legacy/4.5-SNAPSHOT/loci-legacy-4.5-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/loci/lwf-stubs/4.5-SNAPSHOT/lwf-stubs-4.5-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/data/devel/jenkins/.m2/repository/mpicbg/mpicbg/20111128/mpicbg-20111128.jar:/data/devel/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.jar:/data/devel/jenkins/.m2/repository/loci/ome-xml/4.5-SNAPSHOT/ome-xml-4.5-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.jar:/data/devel/jenkins/.m2/repository/loci/scifio/4.5-SNAPSHOT/scifio-4.5-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/loci/scifio-devel/4.5-SNAPSHOT/scifio-devel-4.5-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/data/devel/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar:/data/devel/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/data/devel/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.jar:/data/devel/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java:271: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					LRFFTThreads.convolve1BlockCPU( blocks[ i ], i, image, result, block, fftConvolution1 );
					^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java:318: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
				LRFFTThreads.convolve1BlockCUDA( blocks[ i ], i, device0, image, result, block, kernel1, blockSize );
				^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java:338: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					threads[ i ] = LRFFTThreads.getCPUThread1( ai, blocks, blockSize, factory, image, result, fftConvolution1 );
					               ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java:340: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					threads[ i ] = LRFFTThreads.getCUDAThread1( ai, blocks, blockSize, factory, image, result, deviceList[ i ], kernel1 );
					               ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java:388: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					LRFFTThreads.convolve2BlockCPU( blocks[ i ], image, result, block, fftConvolution2 );
					^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java:419: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
				LRFFTThreads.convolve2BlockCUDA( blocks[ i ], device0, image, result, block, block, blockSize );
				^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java:436: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					threads[ i ] = LRFFTThreads.getCPUThread2( ai, blocks, blockSize, factory, image, result, fftConvolution2 );
					               ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java:438: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					threads[ i ] = LRFFTThreads.getCUDAThread2( ai, blocks, blockSize, factory, image, result, deviceList[ i ], kernel2 );
					               ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
8 errors
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
	at fiji.build.minimaven.POM.build(POM.java:256)
	at fiji.build.minimaven.POM.build(POM.java:210)
	at fiji.build.minimaven.POM.buildJar(POM.java:197)
	at fiji.build.SubFake.buildPOM(SubFake.java:273)
	at fiji.build.SubFake.buildPOM(SubFake.java:255)
	at fiji.build.SubFake.action(SubFake.java:223)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:263)
	at fiji.build.Fake.main(Fake.java:60)
Compile error: 1
	in rule (fiji.build.SubFake) pom-fiji-plugins <- src-plugins/
	in rule (fiji.build.All) all <- ImageJ fiji pom-fiji-plugins
Build step 'Execute shell' marked build as failure