[ImageJ-builds] Build failed in Jenkins: fiji-core #558

Fri Nov 30 07:17:24 CST 2012

See <https://qa.nest-initiative.org/job/fiji-core/558/changes>

Changes:

[stephan.preibisch] Deconvolution works with CUDA now properly

[stephan.preibisch] Working on CUDA for deconvolution to address two graphic cards at once

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Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Anisotropic_Diffusion_2D>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Anisotropic_Diffusion_2D/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Anisotropic_Diffusion_2D/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Anisotropic_Diffusion_2D/src/main/java/anisotropic_diffusion/Anisotropic_Diffusion_2D.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Anisotropic_Diffusion_2D/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Arrow_ not up-to-date because 3 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Arrow_/src/main/java/fiji/util/ArrowShape.java/home/jenkins/workspace/fiji-core/src-plugins/Arrow_/src/main/java/fiji/util/ArrowOptionPanel.java/home/jenkins/workspace/fiji-core/src-plugins/Arrow_/src/main/java/fiji/util/ArrowTool.java)>
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Arrow_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Arrow_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Arrow_/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Arrow_/src/main/java/fiji/util/ArrowShape.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Arrow_/src/main/java/fiji/util/ArrowOptionPanel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Arrow_/src/main/java/fiji/util/ArrowTool.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Arrow_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Auto_Threshold not up-to-date because 2 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java/home/jenkins/workspace/fiji-core/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Local_Threshold.java)>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Auto_Threshold>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Auto_Threshold/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Auto_Threshold/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Local_Threshold.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Auto_Threshold/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
BalloonSegmentation_ not up-to-date because 8 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/BalloonSequence.java/home/jenkins/workspace/fiji-core/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/BalloonPopulation.java/home/jenkins/workspace/fiji-core/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/Balloon.java/home/jenkins/workspace/fiji-core/src-plugins/BalloonSegmentation_/src/main/java/utils/Kinematics.java/home/jenkins/workspace/fiji-core/src-plugins/BalloonSegmentation_/src/main/java/utils/CenterlineSlice.java/home/jenkins/workspace/fiji-core/src-plugins/BalloonSegmentation_/src/main/java/utils/RandPermutation.java/home/jenkins/workspace/fiji-core/src-plugins/BalloonSegmentation_/src/main/java/utils/Watershed.java/home/jenkins/workspace/fiji-core/src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java)>
Compiling 8 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/Jama-1.0.2.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/BalloonSequence.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/BalloonPopulation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/Balloon.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/src/main/java/utils/Kinematics.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/src/main/java/utils/CenterlineSlice.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/src/main/java/utils/RandPermutation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/src/main/java/utils/Watershed.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/Jama-1.0.2.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing /home/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.pom
Parsing /home/jenkins/.m2/repository/org/beanshell/beanshell/2.0b4/beanshell-2.0b4.pom
Parsing /home/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.pom
Skipping artifact tools (for javassist): not found
Warning: <https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar> overrides com.sun>tools

Skipping artifact tools (for javassist): not found
Warning: <https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar> overrides com.sun>tools

Parsing /home/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.pom
Parsing /home/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.pom
fiji-compat not up-to-date because 25 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/ZLibAnalyzer.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/IJ_Alt_Key_Listener.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/Memory.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/PlugInInstaller.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/MemoryProfiler.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/Compile_and_Run.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/gui/FileDialogDecorator.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/gui/JFileChooserDecorator.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/FijiClassLoader.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/MainClassForDebugging.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/IJ1Patcher.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/JavassistHelper.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/OtherInstance.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/Main.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/IJHacker.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/InspectJar.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/User_Plugins.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/SimpleExecuter.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/command/CommandListenerPlus.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/command/Command.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/SetIcon.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/FijiTools.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/SampleImageLoader.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/Headless.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/CheckClassVersions.java)>
BeanShell_Interpreter not up-to-date because of fiji-compat
fiji-compat not up-to-date because 25 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/ZLibAnalyzer.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/IJ_Alt_Key_Listener.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/Memory.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/PlugInInstaller.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/MemoryProfiler.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/Compile_and_Run.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/gui/FileDialogDecorator.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/gui/JFileChooserDecorator.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/FijiClassLoader.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/MainClassForDebugging.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/IJ1Patcher.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/JavassistHelper.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/OtherInstance.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/Main.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/IJHacker.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/InspectJar.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/User_Plugins.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/SimpleExecuter.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/command/CommandListenerPlus.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/command/Command.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/SetIcon.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/FijiTools.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/SampleImageLoader.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/Headless.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-compat/src/main/java/fiji/CheckClassVersions.java)>
Compiling 25 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/ZLibAnalyzer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/IJ_Alt_Key_Listener.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/Memory.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/PlugInInstaller.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/MemoryProfiler.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/Compile_and_Run.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/gui/FileDialogDecorator.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/gui/JFileChooserDecorator.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/FijiClassLoader.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/MainClassForDebugging.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/IJ1Patcher.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/JavassistHelper.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/OtherInstance.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/Main.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/IJHacker.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/InspectJar.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/User_Plugins.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/SimpleExecuter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/command/CommandListenerPlus.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/command/Command.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/SetIcon.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/FijiTools.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/SampleImageLoader.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/Headless.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/src/main/java/fiji/CheckClassVersions.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
fiji-scripting not up-to-date because 3 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/src/main/java/common/RefreshScripts.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-scripting/src/main/java/common/AbstractInterpreter.java/home/jenkins/workspace/fiji-core/src-plugins/fiji-scripting/src/main/java/common/ScriptRunner.java)>
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/home/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/home/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/src/main/java/common/RefreshScripts.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/src/main/java/common/AbstractInterpreter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/src/main/java/common/ScriptRunner.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/home/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/home/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BeanShell_Interpreter>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BeanShell_Interpreter/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/target/fiji-scripting-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/home/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/home/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BeanShell_Interpreter/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BeanShell_Interpreter/src/main/java/BSH/BSH_Interpreter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BeanShell_Interpreter/src/main/java/BSH/Refresh_BSH_Scripts.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BeanShell_Interpreter/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/target/fiji-scripting-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/home/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/home/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Parsing /home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.pom
Fiji_Updater not up-to-date because 8 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/src/main/java/fiji/updater/UptodateCheck.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Adapter.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/StderrUI.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/UI.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Main.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Bootstrap.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/ImageJ1UI.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Updater.java)>
Bug_Submitter not up-to-date because of Fiji_Updater
Fiji_Updater not up-to-date because 8 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/src/main/java/fiji/updater/UptodateCheck.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Adapter.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/StderrUI.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/UI.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Main.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Bootstrap.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/ImageJ1UI.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Updater.java)>
Compiling 8 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/src/main/java/fiji/updater/UptodateCheck.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Adapter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/src/main/java/fiji/updater/StderrUI.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/src/main/java/fiji/updater/UI.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Main.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Bootstrap.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/src/main/java/fiji/updater/ImageJ1UI.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Updater.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Adapter.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Bug_Submitter>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Bug_Submitter/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/target/Fiji_Updater-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Bug_Submitter/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/Bug_Submitter.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Bug_Submitter/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Updater/target/Fiji_Updater-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/Bug_Submitter.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
CLI_ not up-to-date because 9 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/src/main/java/CLI/ImageFileFilter.java/home/jenkins/workspace/fiji-core/src-plugins/CLI_/src/main/java/CLI/OpenDirectory.java/home/jenkins/workspace/fiji-core/src-plugins/CLI_/src/main/java/CLI/Slide_Show.java/home/jenkins/workspace/fiji-core/src-plugins/CLI_/src/main/java/CLI/CLI_.java/home/jenkins/workspace/fiji-core/src-plugins/CLI_/src/main/java/CLI/CustomFileFilter.java/home/jenkins/workspace/fiji-core/src-plugins/CLI_/src/main/java/CLI/Screenshot.java/home/jenkins/workspace/fiji-core/src-plugins/CLI_/src/main/java/CLI/MacroRecord.java/home/jenkins/workspace/fiji-core/src-plugins/CLI_/src/main/java/CLI/TraceError.java/home/jenkins/workspace/fiji-core/src-plugins/CLI_/src/main/java/CLI/Refresh_Macros.java)>
Compiling 9 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/target/fiji-scripting-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/home/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/home/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/src/main/java/CLI/ImageFileFilter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/src/main/java/CLI/OpenDirectory.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/src/main/java/CLI/Slide_Show.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/src/main/java/CLI/CLI_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/src/main/java/CLI/CustomFileFilter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/src/main/java/CLI/Screenshot.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/src/main/java/CLI/MacroRecord.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/src/main/java/CLI/TraceError.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/src/main/java/CLI/Refresh_Macros.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/target/fiji-scripting-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/home/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/home/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing /home/jenkins/.m2/repository/net/java/dev/jna/jna/3.2.7/jna-3.2.7.pom
CPU_Meter not up-to-date because 1 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CPU_Meter/src/main/java/CPU_Meter.java)>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CPU_Meter>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CPU_Meter/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/net/java/dev/jna/jna/3.2.7/jna-3.2.7.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CPU_Meter/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CPU_Meter/src/main/java/CPU_Meter.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CPU_Meter/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/net/java/dev/jna/jna/3.2.7/jna-3.2.7.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Calculator_Plus not up-to-date because 1 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Calculator_Plus/src/main/java/Calculator_Plus.java)>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Calculator_Plus>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Calculator_Plus/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Calculator_Plus/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Calculator_Plus/src/main/java/Calculator_Plus.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Calculator_Plus/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Parsing /home/jenkins/.m2/repository/org/clojure/clojure/1.3.0/clojure-1.3.0.pom
Parsing /home/jenkins/.m2/repository/org/sonatype/oss/oss-parent/5/oss-parent-5.pom
Clojure_Interpreter not up-to-date because 2 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Clojure_Interpreter.java/home/jenkins/workspace/fiji-core/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Refresh_Clojure_Scripts.java)>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:/home/jenkins/.m2/repository/org/clojure/clojure/1.3.0/clojure-1.3.0.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/target/fiji-scripting-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/home/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/home/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Clojure_Interpreter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Refresh_Clojure_Scripts.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:/home/jenkins/.m2/repository/org/clojure/clojure/1.3.0/clojure-1.3.0.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting/target/fiji-scripting-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/home/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/home/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Clojure_Interpreter.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-SNAPSHOT/imglib2-algorithms-2.0.0-20120703.224255-399.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/pom-imglib2-algorithms/2.0.0-SNAPSHOT/pom-imglib2-algorithms-2.0.0-20120703.224255-399.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/pom-imglib2/2.0.0-SNAPSHOT/pom-imglib2-2.0.0-20120703.224255-404.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-SNAPSHOT/imglib2-2.0.0-20120703.224255-399.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-SNAPSHOT/imglib2-ij-2.0.0-20120703.224255-398.pom
Parsing /home/jenkins/.m2/repository/com/itextpdf/itextpdf/5.1.1/itextpdf-5.1.1.pom
Parsing /home/jenkins/.m2/repository/com/itextpdf/itext-parent/1.0.0/itext-parent-1.0.0.pom
Colocalisation_Analysis not up-to-date because 42 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/Accumulator.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/PearsonsCorrelation.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/Histogram2D.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/AutoThresholdRegression.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/Algorithm.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/CostesSignificanceTest.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/InputCheck.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/MissingPreconditionException.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/SpearmanRankCorrelation.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/LiICQ.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/MandersColocalization.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/LiHistogram2D.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/ColocImgLibGadgets.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/tests/StatisticsTest.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/tests/MandersColocalizationTest.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/tests/TestImageAccessor.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/tests/CostesSignificanceTest.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/tests/ImprovedNoise.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/tests/SpearmanRankTest.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/tests/LiICQTest.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/tests/ColocalisationTest.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/tests/MaskAndRoiTest.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/tests/PearsonsCorrelationTest.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/PredicateCursor.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/algorithm/math/ImageStatistics.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/TwinCursor.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/predicate/MaskPredicate.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/predicate/Predicate.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/Coloc_2.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/gadgets/MaskFactory.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/gadgets/Statistics.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/gadgets/DataContainer.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/gadgets/ThresholdMode.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/results/Warning.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/results/PDFWriter.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/results/NamedContainer.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/results/EasyDisplay.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/results/ResultHandler.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/results/ValueResult.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java/home/jenkins/workspace/fiji-core/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java)>
Compiling 42 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-SNAPSHOT/imglib2-2.0.0-20120703.224255-399.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-SNAPSHOT/imglib2-algorithms-2.0.0-20120703.224255-399.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-SNAPSHOT/imglib2-ij-2.0.0-20120703.224255-398.jar:/home/jenkins/.m2/repository/com/itextpdf/itextpdf/5.1.1/itextpdf-5.1.1.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, 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<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/InputCheck.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/MissingPreconditionException.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/SpearmanRankCorrelation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/LiICQ.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/MandersColocalization.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/LiHistogram2D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/ColocImgLibGadgets.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/tests/StatisticsTest.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/tests/MandersColocalizationTest.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/tests/TestImageAccessor.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/tests/CostesSignificanceTest.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/tests/ImprovedNoise.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/tests/SpearmanRankTest.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/tests/LiICQTest.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/tests/ColocalisationTest.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/tests/MaskAndRoiTest.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/tests/PearsonsCorrelationTest.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/PredicateCursor.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/algorithm/math/ImageStatistics.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/TwinCursor.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/predicate/MaskPredicate.java,> 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<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/results/PDFWriter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/results/NamedContainer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/results/EasyDisplay.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/results/ResultHandler.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/results/ValueResult.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-SNAPSHOT/imglib2-2.0.0-20120703.224255-399.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-SNAPSHOT/imglib2-algorithms-2.0.0-20120703.224255-399.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-SNAPSHOT/imglib2-ij-2.0.0-20120703.224255-398.jar:/home/jenkins/.m2/repository/com/itextpdf/itextpdf/5.1.1/itextpdf-5.1.1.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Color_Histogram not up-to-date because 1 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java)>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Color_Inspector_3D not up-to-date because 4 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D/src/main/java/ColorKLT.java/home/jenkins/workspace/fiji-core/src-plugins/Color_Inspector_3D/src/main/java/KLT.java/home/jenkins/workspace/fiji-core/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java/home/jenkins/workspace/fiji-core/src-plugins/Color_Inspector_3D/src/main/java/SymMat.java)>
Compiling 4 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D/src/main/java/ColorKLT.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D/src/main/java/KLT.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D/src/main/java/SymMat.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Colour_Deconvolution not up-to-date because 1 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colour_Deconvolution/src/main/java/Colour_Deconvolution.java)>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colour_Deconvolution>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colour_Deconvolution/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colour_Deconvolution/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colour_Deconvolution/src/main/java/Colour_Deconvolution.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colour_Deconvolution/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
CorrectBleach_ not up-to-date because 8 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_/src/main/java/histogram2/PiecewiseLinearCdf.java/home/jenkins/workspace/fiji-core/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramPlot.java/home/jenkins/workspace/fiji-core/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramMatcher.java/home/jenkins/workspace/fiji-core/src-plugins/CorrectBleach_/src/main/java/histogram2/Util.java/home/jenkins/workspace/fiji-core/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java/home/jenkins/workspace/fiji-core/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java/home/jenkins/workspace/fiji-core/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java/home/jenkins/workspace/fiji-core/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java)>
Compiling 8 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_/src/main/java/histogram2/PiecewiseLinearCdf.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramPlot.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramMatcher.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_/src/main/java/histogram2/Util.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Parsing /home/jenkins/.m2/repository/mpicbg/imglib-io/2.0.0-SNAPSHOT/imglib-io-2.0.0-20120703.224255-404.pom
Parsing /home/jenkins/.m2/repository/loci/loci-common/4.5-SNAPSHOT/loci-common-4.5-20121116.234435-24.pom
Parsing /home/jenkins/.m2/repository/loci/pom-scifio/4.5-SNAPSHOT/pom-scifio-4.5-20121116.234116-24.pom
Parsing /home/jenkins/.m2/repository/loci/loci-legacy/4.5-SNAPSHOT/loci-legacy-4.5-20121116.234224-18.pom
Parsing /home/jenkins/.m2/repository/loci/scifio-devel/4.5-SNAPSHOT/scifio-devel-4.5-20121116.234211-18.pom
Parsing /home/jenkins/.m2/repository/log4j/log4j/1.2.14/log4j-1.2.14.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-parent/1.5.10/slf4j-parent-1.5.10.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-log4j12/1.5.10/slf4j-log4j12-1.5.10.pom
Parsing /home/jenkins/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.pom
Parsing /home/jenkins/.m2/repository/org/apache/apache/4/apache-4.pom
Parsing /home/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.pom
Parsing /home/jenkins/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.pom
Parsing /home/jenkins/.m2/repository/loci/ome-xml/4.5-SNAPSHOT/ome-xml-4.5-20121116.234257-24.pom
Parsing /home/jenkins/.m2/repository/loci/scifio/4.5-SNAPSHOT/scifio-4.5-20121116.234324-24.pom
Parsing /home/jenkins/.m2/repository/loci/jai_imageio/4.5-SNAPSHOT/jai_imageio-4.5-20121116.234141-24.pom
Parsing /home/jenkins/.m2/repository/loci/lwf-stubs/4.5-SNAPSHOT/lwf-stubs-4.5-20121116.234310-24.pom
Parsing /home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.pom
Parsing /home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.pom
Parsing /home/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.pom
Parsing /home/jenkins/.m2/repository/org/sonatype/oss/oss-parent/7/oss-parent-7.pom
Parsing /home/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.pom
Parsing /home/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.pom
Parsing /home/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.pom
Parsing /home/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.pom
Parsing /home/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.pom
Parsing /home/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.pom
Parsing /home/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.pom
Parsing /home/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.pom
Parsing /home/jenkins/.m2/repository/loci/loci_plugins/4.5-SNAPSHOT/loci_plugins-4.5-20121116.234447-24.pom
Parsing /home/jenkins/.m2/repository/loci/bio-formats/4.5-SNAPSHOT/bio-formats-4.5-20121116.234419-24.pom
Parsing /home/jenkins/.m2/repository/loci/mdbtools-java/4.5-SNAPSHOT/mdbtools-java-4.5-20121116.234159-24.pom
Parsing /home/jenkins/.m2/repository/loci/metakit/4.5-SNAPSHOT/metakit-4.5-20121116.234406-24.pom
Parsing /home/jenkins/.m2/repository/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20121116.234240-24.pom
Parsing /home/jenkins/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.pom
Parsing /home/jenkins/.m2/repository/org/apache/commons/commons-parent/5/commons-parent-5.pom
Parsing /home/jenkins/.m2/repository/edu/ucar/netcdf/4.0.03/netcdf-4.0.03.pom
Trying to download http://dev.loci.wisc.edu/maven2/releases/net/imagej/ij/maven-metadata.xml.sha1
Downloading http://dev.loci.wisc.edu/maven2/releases/net/imagej/ij/maven-metadata.xml.sha1 to /home/jenkins/.m2/repository/net/imagej/ij/maven-metadata-version.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/releases/net/imagej/ij/maven-metadata.xml
Checking for new version of ij
Downloading http://dev.loci.wisc.edu/maven2/releases/net/imagej/ij/maven-metadata.xml to /home/jenkins/.m2/repository/net/imagej/ij/maven-metadata-version.xml
Fiji_Plugins not up-to-date because 32 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Rounded_Rectangle.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Select_Bounding_Box.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Binary_to_Point_Selection.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/SEDT.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/EDT.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/AreaCalculations.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/denoise/ROF_Denoise.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Hyperstack_rearranger.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Radial_Reslice.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/CompositeConverter2.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Linear_Gradient.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Radial_Gradient.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/help/Context_Help.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta_Clipboard.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NNearestNeighborSearch.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NearestNeighborSearch.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/KDTree.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Fiji_Uploader.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Leaf.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/NonLeaf.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/SimpleNode.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Node.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/TestKDTree.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Circle_Fitter.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Recent_Commands.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/CurrentSlice.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/DistanceComparator.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/RadiusNeighborSearch.java)>
Descriptor_based_registration not up-to-date because of Fiji_Plugins
Fiji_Plugins not up-to-date because 32 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Rounded_Rectangle.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Select_Bounding_Box.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Binary_to_Point_Selection.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/SEDT.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/EDT.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/AreaCalculations.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/denoise/ROF_Denoise.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Hyperstack_rearranger.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Radial_Reslice.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/CompositeConverter2.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Linear_Gradient.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Radial_Gradient.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/help/Context_Help.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta_Clipboard.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NNearestNeighborSearch.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NearestNeighborSearch.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/KDTree.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Fiji_Uploader.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Leaf.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/NonLeaf.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/SimpleNode.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Node.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/TestKDTree.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Circle_Fitter.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Recent_Commands.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/CurrentSlice.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/DistanceComparator.java/home/jenkins/workspace/fiji-core/src-plugins/Fiji_Plugins/src/main/java/fiji/util/RadiusNeighborSearch.java)>
Compiling 32 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/Jama-1.0.2.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Rounded_Rectangle.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Select_Bounding_Box.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Binary_to_Point_Selection.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/SEDT.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/EDT.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/AreaCalculations.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/denoise/ROF_Denoise.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Hyperstack_rearranger.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Radial_Reslice.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/CompositeConverter2.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Linear_Gradient.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Radial_Gradient.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/help/Context_Help.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta_Clipboard.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NNearestNeighborSearch.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NearestNeighborSearch.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/KDTree.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Fiji_Uploader.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Leaf.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/NonLeaf.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/SimpleNode.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Node.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/TestKDTree.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Circle_Fitter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Recent_Commands.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/CurrentSlice.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/DistanceComparator.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/RadiusNeighborSearch.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/Jama-1.0.2.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
SPIM_Opener not up-to-date because 16 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMRegularStack.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/Count_Files.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMExperiment.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/DoubleSlider.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/MaximumProjector.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/MinimumProjector.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/Combine_SPIM_Projects.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMStack.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/XMLReader.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/Check_Directories.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIM_Opener.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/OpenerGenericDialog.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMVirtualStack.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/Projector.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Opener/src/main/java/spimopener/Rename.java)>
Compiling 16 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMRegularStack.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/Count_Files.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMExperiment.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/DoubleSlider.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/MaximumProjector.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/MinimumProjector.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/Combine_SPIM_Projects.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMStack.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/XMLReader.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/Check_Directories.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIM_Opener.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/OpenerGenericDialog.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMVirtualStack.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/Projector.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/Rename.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
SPIM_Registration not up-to-date because 145 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/MultiChannel_SPIM_Registration.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/SPIM_Registration_File.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/SPIMRegistrationAbstract.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/SimplePointDescriptor.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/SquareDistance.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/SimilarityMeasure.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/LinearDistance.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/ManhattanDistance.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/SubsetMatcher.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/Quaternion.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/Matcher.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/ModelPriorSubsetMatcher.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/ModelPriorMatcher.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/SimpleMatcher.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/test/PointNode.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/test/TestPointDescriptor.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/test/VirtualPointNode.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LinkedPoint.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/ModelPointDescriptor.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantAffineModel3D.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/RigidModelOld3D.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantRigidModel2D.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantRigidModel3D.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantModel.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantSimilarityModel3D.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/FixedModel.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantFixedModel.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/exception/NoSuitablePointsException.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/AbstractPointDescriptor.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LocalCoordinateSystemPointDescriptor.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/PointMatchIdentification.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/SimplePointMatchIdentification.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/ICP.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/Bead.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/DoGMaximum.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/RejectStatistics.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/LaPlaceFunctions.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/GlobalErrorStatisticsImpl.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spi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pim/vib/math3d/JacobiDouble.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Line.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Plane.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Triangle.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Point3d.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/FastMatrixN.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/FastMatrix.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/preprocessing/AutomaticAngleSetup.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/Reconstruction.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizationSketchTikZ.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/Motion3D.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizeBeads.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/PreviewRegistration.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizationFunctions.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/Viewer3dFunctions.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/BeadTransformGroup.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/simulation/SimulateBeadImage.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/mpicbg/util/TransformUtils.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/SPIM_Registration.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Multi_View_Fusion.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Multi_View_Deconvolution.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Apply_External_Transformation.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/TimeLapseDisplay.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/RegistrationStatistics.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/GraphFrame.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/MouseListenerTimelapse.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/FileOpenMenuEntry.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Bead_Registration.java/home/jenkins/workspace/fiji-core/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Regtest.java)>
Compiling 145 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration>
[-source, 1.5, -target, 1.5, -classpath, 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<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserSPIM.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/IOFunctions.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/TextFileAccess.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserGeneral.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ProgramConfiguration.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserException.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserObject.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/SPIMConfiguration.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ParsePattern.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ImgLibSaver.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/JacobiDouble.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Line.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Plane.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Triangle.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Point3d.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/FastMatrixN.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/FastMatrix.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/preprocessing/AutomaticAngleSetup.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/Reconstruction.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizationSketchTikZ.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/Motion3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizeBeads.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/PreviewRegistration.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizationFunctions.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/Viewer3dFunctions.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/BeadTransformGroup.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/simulation/SimulateBeadImage.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/util/TransformUtils.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/SPIM_Registration.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Multi_View_Fusion.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Multi_View_Deconvolution.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Apply_External_Transformation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/TimeLapseDisplay.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/RegistrationStatistics.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/GraphFrame.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/MouseListenerTimelapse.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/FileOpenMenuEntry.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Bead_Registration.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Regtest.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/target/Fiji_Plugins-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/Jama-1.0.2.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/target/SPIM_Opener-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar:/home/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.47f/ij-1.47f.jar:/home/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-io/2.0.0-SNAPSHOT/imglib-io-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.jar:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/loci/jai_imageio/4.5-SNAPSHOT/jai_imageio-4.5-20121116.234141-24.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar:/home/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.jar:/home/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.jar:/home/jenkins/.m2/repository/net/java/dev/jna/jna/3.2.7/jna-3.2.7.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/home/jenkins/.m2/repository/loci/loci-common/4.5-SNAPSHOT/loci-common-4.5-20121116.234435-24.jar:/home/jenkins/.m2/repository/loci/loci-legacy/4.5-SNAPSHOT/loci-legacy-4.5-20121116.234224-18.jar:/home/jenkins/.m2/repository/loci/lwf-stubs/4.5-SNAPSHOT/lwf-stubs-4.5-20121116.234310-24.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20111128/mpicbg-20111128.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.jar:/home/jenkins/.m2/repository/loci/ome-xml/4.5-SNAPSHOT/ome-xml-4.5-20121116.234257-24.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.jar:/home/jenkins/.m2/repository/loci/scifio/4.5-SNAPSHOT/scifio-4.5-20121116.234324-24.jar:/home/jenkins/.m2/repository/loci/scifio-devel/4.5-SNAPSHOT/scifio-devel-4.5-20121116.234211-18.jar:/home/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/home/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.jar:/home/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java>:271: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					LRFFTThreads.convolve1BlockCPU( blocks[ i ], i, image, result, block, fftConvolution1 );
					^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java>:318: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
				LRFFTThreads.convolve1BlockCUDA( blocks[ i ], i, device0, image, result, block, kernel1, blockSize );
				^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java>:338: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					threads[ i ] = LRFFTThreads.getCPUThread1( ai, blocks, blockSize, factory, image, result, fftConvolution1 );
					               ^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java>:340: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					threads[ i ] = LRFFTThreads.getCUDAThread1( ai, blocks, blockSize, factory, image, result, deviceList[ i ], kernel1 );
					               ^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java>:388: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					LRFFTThreads.convolve2BlockCPU( blocks[ i ], image, result, block, fftConvolution2 );
					^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java>:419: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
				LRFFTThreads.convolve2BlockCUDA( blocks[ i ], device0, image, result, block, block, blockSize );
				^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java>:436: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					threads[ i ] = LRFFTThreads.getCPUThread2( ai, blocks, blockSize, factory, image, result, fftConvolution2 );
					               ^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java>:438: cannot find symbol
symbol  : variable LRFFTThreads
location: class mpicbg.spim.postprocessing.deconvolution2.LRFFT
					threads[ i ] = LRFFTThreads.getCUDAThread2( ai, blocks, blockSize, factory, image, result, deviceList[ i ], kernel2 );
					               ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
8 errors
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
	at fiji.build.minimaven.POM.build(POM.java:256)
	at fiji.build.minimaven.POM.build(POM.java:210)
	at fiji.build.minimaven.POM.buildJar(POM.java:197)
	at fiji.build.SubFake.buildPOM(SubFake.java:273)
	at fiji.build.SubFake.buildPOM(SubFake.java:255)
	at fiji.build.SubFake.action(SubFake.java:223)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:263)
	at fiji.build.Fake.main(Fake.java:60)
Compile error: 1
	in rule (fiji.build.SubFake) pom-fiji-plugins <- src-plugins/
	in rule (fiji.build.All) all <- ImageJ fiji pom-fiji-plugins
Build step 'Execute shell' marked build as failure