[ImageJ-builds] Build failed in Jenkins: Fiji-Maven #115

Sat Nov 24 16:44:54 CST 2012

See <http://jenkins.imagej.net/job/Fiji-Maven/115/changes>

Changes:

[Mark Longair] Fix the calculation of normalized crossings in 3D

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[...truncated 5170 lines...]
[INFO] jars/fiji-compat.jar .................................. SUCCESS [1.221s]
[INFO] jars/fiji-scripting.jar ............................... SUCCESS [0.943s]
[INFO] plugins/BeanShell_Interpreter.jar ..................... SUCCESS [0.675s]
[INFO] plugins/Fiji_Updater.jar .............................. SUCCESS [0.697s]
[INFO] plugins/Bug_Submitter.jar ............................. SUCCESS [0.742s]
[INFO] plugins/CLI_.jar ...................................... SUCCESS [1.055s]
[INFO] plugins/CPU_Meter.jar ................................. SUCCESS [0.518s]
[INFO] plugins/Calculator_Plus.jar ........................... SUCCESS [0.531s]
[INFO] plugins/Clojure_Interpreter.jar ....................... SUCCESS [2.265s]
[INFO] plugins/Colocalisation_Analysis.jar ................... SUCCESS [4.725s]
[INFO] plugins/Color_Histogram.jar ........................... SUCCESS [0.669s]
[INFO] plugins/Color_Inspector_3D.jar ........................ SUCCESS [1.528s]
[INFO] plugins/Colour_Deconvolution.jar ...................... SUCCESS [0.733s]
[INFO] plugins/CorrectBleach_.jar ............................ SUCCESS [0.626s]
[INFO] plugins/Fiji_Plugins.jar .............................. SUCCESS [1.635s]
[INFO] plugins/SPIM_Opener.jar ............................... SUCCESS [0.875s]
[INFO] plugins/SPIM_Registration.jar ......................... SUCCESS [4.643s]
[INFO] plugins/Stitching_.jar ................................ SUCCESS [2.740s]
[INFO] plugins/Descriptor_based_registration.jar ............. SUCCESS [1.639s]
[INFO] plugins/Dichromacy_.jar ............................... SUCCESS [0.534s]
[INFO] plugins/Differentials_.jar ............................ SUCCESS [1.223s]
[INFO] plugins/Directionality_.jar ........................... SUCCESS [0.857s]
[INFO] jars/imageware.jar .................................... SUCCESS [2.679s]
[INFO] jars/wavelets.jar ..................................... SUCCESS [0.761s]
[INFO] plugins/Extended_Depth_Field.jar ...................... SUCCESS [1.558s]
[INFO] plugins/FS_Align_TrakEM2.jar .......................... SUCCESS [0.825s]
[INFO] jars/imagescience.jar ................................. SUCCESS [3.694s]
[INFO] plugins/FeatureJ_.jar ................................. SUCCESS [0.891s]
[INFO] plugins/Feature_Detection.jar ......................... SUCCESS [0.667s]
[INFO] jars/fake.jar ......................................... SUCCESS [1.447s]
[INFO] plugins/JRuby_Interpreter.jar ......................... SUCCESS [0.784s]
[INFO] plugins/Javascript_.jar ............................... SUCCESS [0.615s]
[INFO] plugins/Jython_Interpreter.jar ........................ SUCCESS [0.687s]
[INFO] plugins/Refresh_Javas.jar ............................. SUCCESS [0.805s]
[INFO] plugins/Script_Editor.jar ............................. SUCCESS [2.200s]
[INFO] plugins/Fiji_Developer.jar ............................ SUCCESS [1.334s]
[INFO] plugins/Fiji_Package_Maker.jar ........................ SUCCESS [4.047s]
[INFO] plugins/FlowJ_.jar .................................... SUCCESS [2.142s]
[INFO] plugins/Graph_Cut.jar ................................. SUCCESS [0.987s]
[INFO] plugins/Gray_Morphology.jar ........................... SUCCESS [0.741s]
[INFO] plugins/Helmholtz_Analysis.jar ........................ SUCCESS [0.547s]
[INFO] plugins/IJ_Robot.jar .................................. SUCCESS [0.571s]
[INFO] plugins/IO_.jar ....................................... SUCCESS [2.292s]
[INFO] jars/jep.jar .......................................... SUCCESS [3.306s]
[INFO] plugins/Image_Expression_Parser.jar ................... SUCCESS [1.387s]
[INFO] plugins/Interactive_3D_Surface_Plot.jar ............... SUCCESS [1.253s]
[INFO] plugins/IsoData_Classifier.jar ........................ SUCCESS [0.523s]
[INFO] plugins/Kuwahara_Filter.jar ........................... SUCCESS [1.967s]
[INFO] plugins/LSM_Reader.jar ................................ SUCCESS [0.694s]
[INFO] plugins/LSM_Toolbox.jar ............................... SUCCESS [1.591s]
[INFO] plugins/Lasso_and_Blow_Tool.jar ....................... SUCCESS [0.695s]
[INFO] plugins/Linear_Kuwahara.jar ........................... SUCCESS [0.526s]
[INFO] plugins/LocalThickness_.jar ........................... SUCCESS [0.691s]
[INFO] plugins/MTrack2_.jar .................................. SUCCESS [0.598s]
[INFO] plugins/MTrackJ_.jar .................................. SUCCESS [1.374s]
[INFO] plugins/M_I_P.jar ..................................... SUCCESS [0.680s]
[INFO] plugins/Manual_Tracking.jar ........................... SUCCESS [0.862s]
[INFO] plugins/MosaicJ_.jar .................................. SUCCESS [1.265s]
[INFO] plugins/Multi_Kymograph.jar ........................... SUCCESS [0.596s]
[INFO] plugins/PIV_analyser.jar .............................. SUCCESS [0.665s]
[INFO] plugins/PointPicker_.jar .............................. SUCCESS [0.864s]
[INFO] plugins/QuickPALM_.jar ................................ SUCCESS [0.925s]
[INFO] plugins/RATS_.jar ..................................... SUCCESS [0.667s]
[INFO] plugins/RandomJ_.jar .................................. SUCCESS [0.679s]
[INFO] plugins/Reconstruct_Reader.jar ........................ SUCCESS [0.920s]
[INFO] plugins/Samples_.jar .................................. SUCCESS [0.158s]
[INFO] plugins/Scala_Interpreter.jar ......................... SUCCESS [5.106s]
[INFO] plugins/Series_Labeler.jar ............................ SUCCESS [0.780s]
[INFO] plugins/SheppLogan_.jar ............................... SUCCESS [0.546s]
[INFO] plugins/Skeletonize3D_.jar ............................ SUCCESS [0.629s]
[INFO] plugins/VIB_.jar ...................................... SUCCESS [4.011s]
[INFO] plugins/Simple_Neurite_Tracer.jar ..................... SUCCESS [2.686s]
[INFO] plugins/Siox_Segmentation.jar ......................... SUCCESS [1.328s]
[INFO] plugins/Snakuscule_.jar ............................... SUCCESS [0.952s]
[INFO] plugins/SplineDeformationGenerator_.jar ............... SUCCESS [0.900s]
[INFO] plugins/StackReg_.jar ................................. SUCCESS [0.859s]
[INFO] plugins/Stack_Manipulation.jar ........................ SUCCESS [0.844s]
[INFO] plugins/Statistical_Region_Merging.jar ................ SUCCESS [0.579s]
[INFO] plugins/Sync_Win.jar .................................. SUCCESS [1.037s]
[INFO] plugins/Thread_Killer.jar ............................. SUCCESS [0.496s]
[INFO] plugins/Threshold_Colour.jar .......................... SUCCESS [0.766s]
[INFO] plugins/Time_Stamper.jar .............................. SUCCESS [0.541s]
[INFO] plugins/ToAST_.jar .................................... SUCCESS [0.872s]
[INFO] plugins/TopoJ_.jar .................................... SUCCESS [0.600s]
[INFO] plugins/TrackMate_.jar ................................ SUCCESS [4.255s]
[INFO] plugins/Trainable_Segmentation.jar .................... SUCCESS [3.051s]
[INFO] plugins/TransformJ_.jar ............................... SUCCESS [1.177s]
[INFO] plugins/TurboReg_.jar ................................. SUCCESS [1.381s]
[INFO] plugins/UnwarpJ_.jar .................................. SUCCESS [3.066s]
[INFO] jars/Updater_Fix.jar .................................. SUCCESS [0.575s]
[INFO] plugins/Vaa3d_Reader.jar .............................. SUCCESS [0.668s]
[INFO] plugins/Video_Editing.jar ............................. SUCCESS [0.685s]
[INFO] plugins/View5D_.jar ................................... SUCCESS [1.738s]
[INFO] plugins/Volume_Viewer.jar ............................. SUCCESS [1.338s]
[INFO] plugins/bUnwarpJ_.jar ................................. SUCCESS [1.864s]
[INFO] plugins/blockmatching_.jar ............................ SUCCESS [0.658s]
[INFO] jars/javac.jar ........................................ SUCCESS [5.219s]
[INFO] jars/mij.jar .......................................... SUCCESS [0.841s]
[INFO] plugins/panorama_.jar ................................. SUCCESS [0.920s]
[INFO] plugins/register_virtual_stack_slices.jar ............. SUCCESS [0.905s]
[INFO] plugins/registration_3d.jar ........................... SUCCESS [1.364s]
[INFO] jars/weave_jy2java.jar ................................ SUCCESS [0.917s]
[INFO] ------------------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 2 minutes 51 seconds
[INFO] Finished at: Sat Nov 24 16:44:46 CST 2012
[INFO] Final Memory: 144M/5282M
[INFO] ------------------------------------------------------------------------
[workspace] $ /bin/sh -xe /tmp/hudson238190636185454474.sh
+ bin/incremental-deploy.sh
Deploying src-plugins/Simple_Neurite_Tracer/
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/Simple_Neurite_Tracer.jar
[INFO]    task-segment: [deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] Checking for local modifications: skipped.
[INFO] Updating project files from SCM: skipped.
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Simple_Neurite_Tracer && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Simple_Neurite_Tracer
[INFO] Storing buildNumber: e2bdc9a512bd63f6d58d29f47115e6714cae3072 at timestamp: 1353797092932
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Simple_Neurite_Tracer && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Simple_Neurite_Tracer
[INFO] Storing buildScmBranch: UNKNOWN
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Nothing to compile - all classes are up to date
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Simple_Neurite_Tracer/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Simple_Neurite_Tracer/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [source:jar {execution: default}]
[INFO] tracing already added, skipping
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Simple_Neurite_Tracer/target/Simple_Neurite_Tracer-2.0.0.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Simple_Neurite_Tracer/2.0.0/Simple_Neurite_Tracer-2.0.0.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Simple_Neurite_Tracer/target/Simple_Neurite_Tracer-2.0.0-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Simple_Neurite_Tracer/2.0.0/Simple_Neurite_Tracer-2.0.0-sources.jar
[INFO] [deploy:deploy {execution: default-deploy}]
Uploading: http://maven.imagej.net/content/repositories/releases/sc/fiji/Simple_Neurite_Tracer/2.0.0/Simple_Neurite_Tracer-2.0.0.jar
Nov 24, 2012 4:44:54 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
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[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Error deploying artifact: Failed to transfer file: http://maven.imagej.net/content/repositories/releases/sc/fiji/Simple_Neurite_Tracer/2.0.0/Simple_Neurite_Tracer-2.0.0.jar. Return code is: 400

[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3 seconds
[INFO] Finished at: Sat Nov 24 16:44:54 CST 2012
[INFO] Final Memory: 31M/643M
[INFO] ------------------------------------------------------------------------
Build step 'Execute shell' marked build as failure