[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #1091
jenkins at imagej.net
jenkins at imagej.net
Fri Nov 16 14:38:09 CST 2012
See <http://jenkins.imagej.net/job/Fiji-minimal/1091/>
------------------------------------------
[...truncated 480 lines...]
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 4 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:532: warning: unmappable character for encoding ASCII
* Returns the centro??ds' list.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:532: warning: unmappable character for encoding ASCII
* Returns the centro??ds' list.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:534: warning: unmappable character for encoding ASCII
* @return the coordinates of all found centro??ds as a dual float array ([ID][0:x, 1:y, 2:z]).
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:534: warning: unmappable character for encoding ASCII
* @return the coordinates of all found centro??ds as a dual float array ([ID][0:x, 1:y, 2:z]).
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:542: warning: unmappable character for encoding ASCII
* Returns the centro??ds' map.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:542: warning: unmappable character for encoding ASCII
* Returns the centro??ds' map.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:546: warning: unmappable character for encoding ASCII
* @param fontSize font size of the numbers to be shown (integer).* @return an ImagePlus containing all centro??ds, each one carrying pixel value equal to its ID.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:546: warning: unmappable character for encoding ASCII
* @param fontSize font size of the numbers to be shown (integer).* @return an ImagePlus containing all centro??ds, each one carrying pixel value equal to its ID.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:555: warning: unmappable character for encoding ASCII
* Returns the centro??ds' map.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:555: warning: unmappable character for encoding ASCII
* Returns the centro??ds' map.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:557: warning: unmappable character for encoding ASCII
* @return an ImagePlus containing all centro??ds, each one carrying pixel value equal to its ID.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:557: warning: unmappable character for encoding ASCII
* @return an ImagePlus containing all centro??ds, each one carrying pixel value equal to its ID.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:712: warning: unmappable character for encoding ASCII
* X, Y and Z: coordinates of the current object's centro??d.</P>
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java:712: warning: unmappable character for encoding ASCII
* X, Y and Z: coordinates of the current object's centro??d.</P>
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Object3D.java:81: warning: unmappable character for encoding ASCII
/**Coordinates of the centro??d (centroid[0:x, 1:y, 2:z]*/
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Object3D.java:81: warning: unmappable character for encoding ASCII
/**Coordinates of the centro??d (centroid[0:x, 1:y, 2:z]*/
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/_3D_objects_counter.java:6: warning: unmappable character for encoding ASCII
* Copyright (C) 2007 Fabrice P. Cordeli??res
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/_3D_objects_counter.java:6: warning: unmappable character for encoding ASCII
* Copyright (C) 2007 Fabrice P. Cordeli??res
^
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
18 warnings
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Action_Bar
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Algorithm_Launcher
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmInfo.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 6 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/AnalyzeSkeleton_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Analyze_Reader_Writer
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Anisotropic_Diffusion_2D
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Arrow_
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java:505: warning: unmappable character for encoding ASCII
// ???at valley are unsuitable for this method.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java:505: warning: unmappable character for encoding ASCII
// ???at valley are unsuitable for this method.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java:505: warning: unmappable character for encoding ASCII
// ???at valley are unsuitable for this method.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java:867: warning: unmappable character for encoding ASCII
// Threshold t is such that yt???1 > yt ??? yt+1.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java:867: warning: unmappable character for encoding ASCII
// Threshold t is such that yt???1 > yt ??? yt+1.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java:867: warning: unmappable character for encoding ASCII
// Threshold t is such that yt???1 > yt ??? yt+1.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java:867: warning: unmappable character for encoding ASCII
// Threshold t is such that yt???1 > yt ??? yt+1.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java:867: warning: unmappable character for encoding ASCII
// Threshold t is such that yt???1 > yt ??? yt+1.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java:867: warning: unmappable character for encoding ASCII
// Threshold t is such that yt???1 > yt ??? yt+1.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java:869: warning: unmappable character for encoding ASCII
// ???at valley are unsuitable for this method.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java:869: warning: unmappable character for encoding ASCII
// ???at valley are unsuitable for this method.
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java:869: warning: unmappable character for encoding ASCII
// ???at valley are unsuitable for this method.
^
12 warnings
Compiling 8 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/BalloonSegmentation_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar overrides com.sun>tools
Warning: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar overrides com.sun>tools
Compiling 25 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/fiji-compat
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/fiji-scripting
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/BeanShell_Interpreter
Compiling 8 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Updater
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Adapter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Bug_Submitter
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/Bug_Submitter.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 9 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CLI_
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CPU_Meter
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Calculator_Plus
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Clojure_Interpreter
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Clojure_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 42 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:171: warning: unmappable character for encoding ASCII
gd2.addNumericField("Pixel Size (??m)", pixelSize,3);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:171: warning: unmappable character for encoding ASCII
gd2.addNumericField("Pixel Size (??m)", pixelSize,3);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:660: warning: unmappable character for encoding ASCII
+"\tR(rand) mean??sd"
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:660: warning: unmappable character for encoding ASCII
+"\tR(rand) mean??sd"
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:668: warning: unmappable character for encoding ASCII
if (Costes||rBlocks) strPSF = df3.format(psf*pixelSize*2)+ " ??m ("+df0.format(psf*2)+" pix.)" ;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:668: warning: unmappable character for encoding ASCII
if (Costes||rBlocks) strPSF = df3.format(psf*pixelSize*2)+ " ??m ("+df0.format(psf*2)+" pix.)" ;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:672: warning: unmappable character for encoding ASCII
"\t" +df3.format(r2mean) + "??"+ df3.format(r2sd)+
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:672: warning: unmappable character for encoding ASCII
"\t" +df3.format(r2mean) + "??"+ df3.format(r2sd)+
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:695: warning: unmappable character for encoding ASCII
//[i.e. E(ch1if ch2>0) ?? E(ch1total)]
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:695: warning: unmappable character for encoding ASCII
//[i.e. E(ch1if ch2>0) ?? E(ch1total)]
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:702: warning: unmappable character for encoding ASCII
//[i.e. E(ch1 if ch2>ch2threshold) ?? (Ech1total)]
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:702: warning: unmappable character for encoding ASCII
//[i.e. E(ch1 if ch2>ch2threshold) ?? (Ech1total)]
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:707: warning: unmappable character for encoding ASCII
//[i.e. E(ch1>ch1threshold) ?? E(ch1total)]
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:707: warning: unmappable character for encoding ASCII
//[i.e. E(ch1>ch1threshold) ?? E(ch1total)]
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
14 warnings
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Histogram
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 4 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colour_Deconvolution
Compiling 8 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java:8: warning: unmappable character for encoding ASCII
* Copyright ?? 2010 Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java:8: warning: unmappable character for encoding ASCII
* Copyright ?? 2010 Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java:13: warning: unmappable character for encoding ASCII
* Copyright ?? 2004, 2005, 2010 Jens Rietdorf, Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java:13: warning: unmappable character for encoding ASCII
* Copyright ?? 2004, 2005, 2010 Jens Rietdorf, Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java:15: warning: unmappable character for encoding ASCII
* Copyright ?? 2010 Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java:15: warning: unmappable character for encoding ASCII
* Copyright ?? 2010 Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java:22: warning: unmappable character for encoding ASCII
* Copyright ?? 2010 Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java:22: warning: unmappable character for encoding ASCII
* Copyright ?? 2010 Kota Miura
^
8 warnings
Problems downloading the dependencies of Descriptor_based_registration
Could not build Descriptor_based_registration, target is pom-fiji-plugins
java.io.FileNotFoundException: /data/devel/jenkins/.m2/repository/loci/scifio/4.5-SNAPSHOT/maven-metadata-snapshot.xml (No such file or directory)
at java.io.FileInputStream.open(Native Method)
at java.io.FileInputStream.<init>(FileInputStream.java:106)
at fiji.build.minimaven.SnapshotPOMHandler.parse(SnapshotPOMHandler.java:44)
at fiji.build.minimaven.POM.getDependencies(POM.java:451)
at fiji.build.minimaven.POM.getDependencies(POM.java:464)
at fiji.build.minimaven.POM.getDependencies(POM.java:422)
at fiji.build.minimaven.POM.upToDate(POM.java:116)
at fiji.build.SubFake.buildPOM(SubFake.java:271)
at fiji.build.SubFake.buildPOM(SubFake.java:255)
at fiji.build.SubFake.action(SubFake.java:223)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:245)
at fiji.build.Fake.main(Fake.java:60)
/data/devel/jenkins/.m2/repository/loci/scifio/4.5-SNAPSHOT/maven-metadata-snapshot.xml (No such file or directory)
in rule pom-fiji-plugins <- src-plugins/
in rule all <- ImageJ fiji pom-fiji-plugins
Build step 'Execute shell' marked build as failure
More information about the ImageJ-builds
mailing list