[ImageJ-builds] Build failed in Jenkins: fiji-core #367

[Jenkins Daemon]

See <https://qa.nest-initiative.org/job/fiji-core/367/changes>

Changes:

[johannes.schindelin] Remove the precompiled ImageJ launchers

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Checking prerequisites of (fiji.build.CompileJar) plugins/SplineDeformationGenerato...
plugins/SplineDeformationGenerator_.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/SplineDeformationGenerato...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_.java
Note: src-plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: src-plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making plugins/SplineDeformationGenerator_.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$10.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$11.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$12.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$13.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$14.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$4.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$5.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$6.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$7.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$8.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog$9.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorDialog.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorImageModel.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorMiscTools.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_$splineDeformationGeneratorTransformation.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/SplineDeformationGenerator_/SplineDeformationGenerator/SplineDeformationGenerator_.class> src-plugins/SplineDeformationGenerator_/ src-plugins/SplineDeformationGenerator_/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/CorrectBleach_.jar <- src...
plugins/CorrectBleach_.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/CorrectBleach_.jar <- src...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/CorrectBleach_> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/CorrectBleach_/histogram2/HistogramPlot.java src-plugins/CorrectBleach_/emblcmci/BleachCorrection_SimpleRatio.java src-plugins/CorrectBleach_/histogram2/Util.java src-plugins/CorrectBleach_/histogram2/PiecewiseLinearCdf.java src-plugins/CorrectBleach_/emblcmci/BleachCorrection_ExpoFit.java src-plugins/CorrectBleach_/emblcmci/BleachCorrection.java src-plugins/CorrectBleach_/histogram2/HistogramMatcher.java src-plugins/CorrectBleach_/emblcmci/BleachCorrection_MH.java
Making plugins/CorrectBleach_.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/CorrectBleach_/emblcmci/BleachCorrection.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/CorrectBleach_/emblcmci/BleachCorrection_ExpoFit.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/CorrectBleach_/emblcmci/BleachCorrection_MH.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/CorrectBleach_/emblcmci/BleachCorrection_SimpleRatio.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/CorrectBleach_/histogram2/HistogramMatcher.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/CorrectBleach_/histogram2/HistogramPlot.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/CorrectBleach_/histogram2/PiecewiseLinearCdf.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/CorrectBleach_/histogram2/Util.class> src-plugins/CorrectBleach_/ src-plugins/CorrectBleach_/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/Colocalisation_Analysis.j...
plugins/Colocalisation_Analysis.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/Colocalisation_Analysis.j...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis> -source 1.5 -target 1.5 -classpath jars/ij.jar:jars/imglib2.jar:jars/imglib2-ij.jar:jars/imglib2-algorithms.jar:jars/junit.jar:jars/itextpdf.jar:jars/fiji-lib.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/Colocalisation_Analysis/tests/MaskAndRoiTest.java src-plugins/Colocalisation_Analysis/tests/SpearmanRankTest.java src-plugins/Colocalisation_Analysis/results/EasyDisplay.java src-plugins/Colocalisation_Analysis/algorithms/SpearmanRankCorrelation.java src-plugins/Colocalisation_Analysis/algorithms/Accumulator.java src-plugins/Colocalisation_Analysis/algorithms/AutoThresholdRegression.java src-plugins/Colocalisation_Analysis/tests/MandersColocalizationTest.java src-plugins/Colocalisation_Analysis/algorithms/InputCheck.java src-plugins/Colocalisation_Analysis/results/Warning.java src-plugins/Colocalisation_Analysis/net/imglib2/predicate/Predicate.java src-plugins/Colocalisation_Analysis/algorithms/LiHistogram2D.java src-plugins/Colocalisation_Analysis/tests/PearsonsCorrelationTest.java src-plugins/Colocalisation_Analysis/results/ValueResult.java src-plugins/Colocalisation_Analysis/Colocalisation_Threshold.java src-plugins/Colocalisation_Analysis/algorithms/Histogram2D.java src-plugins/Colocalisation_Analysis/gadgets/ThresholdMode.java src-plugins/Colocalisation_Analysis/net/imglib2/predicate/MaskPredicate.java src-plugins/Colocalisation_Analysis/algorithms/MandersColocalization.java src-plugins/Colocalisation_Analysis/results/NamedContainer.java src-plugins/Colocalisation_Analysis/tests/ImprovedNoise.java src-plugins/Colocalisation_Analysis/algorithms/CostesSignificanceTest.java src-plugins/Colocalisation_Analysis/tests/CostesSignificanceTest.java src-plugins/Colocalisation_Analysis/tests/ColocalisationTest.java src-plugins/Colocalisation_Analysis/tests/StatisticsTest.java src-plugins/Colocalisation_Analysis/results/SingleWindowDisplay.java src-plugins/Colocalisation_Analysis/gadgets/DataContainer.java src-plugins/Colocalisation_Analysis/algorithms/PearsonsCorrelation.java src-plugins/Colocalisation_Analysis/results/PDFWriter.java src-plugins/Colocalisation_Analysis/gadgets/MaskFactory.java src-plugins/Colocalisation_Analysis/tests/TestImageAccessor.java src-plugins/Colocalisation_Analysis/tests/LiICQTest.java src-plugins/Colocalisation_Analysis/ColocImgLibGadgets.java src-plugins/Colocalisation_Analysis/algorithms/LiICQ.java src-plugins/Colocalisation_Analysis/results/ResultHandler.java src-plugins/Colocalisation_Analysis/net/imglib2/TwinCursor.java src-plugins/Colocalisation_Analysis/algorithms/MissingPreconditionException.java src-plugins/Colocalisation_Analysis/gadgets/Statistics.java src-plugins/Colocalisation_Analysis/algorithms/Algorithm.java src-plugins/Colocalisation_Analysis/Coloc_2.java src-plugins/Colocalisation_Analysis/net/imglib2/algorithm/math/ImageStatistics.java src-plugins/Colocalisation_Analysis/net/imglib2/PredicateCursor.java src-plugins/Colocalisation_Analysis/Colocalisation_Test.java
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: src-plugins/Colocalisation_Analysis/results/SingleWindowDisplay.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making plugins/Colocalisation_Analysis.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/ColocImgLibGadgets.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/Coloc_2$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/Coloc_2$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/Coloc_2$BoundingBox.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/Coloc_2$MaskInfo.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/Coloc_2$RoiConfiguration.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/Coloc_2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/Colocalisation_Test.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/Colocalisation_Threshold$MinMaxContainer.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/Colocalisation_Threshold.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/Accumulator.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/Algorithm.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/AutoThresholdRegression.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/CostesSignificanceTest.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/Histogram2D$DrawingFlags.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/Histogram2D.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/InputCheck.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/LiHistogram2D.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/LiICQ.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/MandersColocalization$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/MandersColocalization$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/MandersColocalization$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/MandersColocalization$MandersAccumulator.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/MandersColocalization$MandersResults.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/MandersColocalization.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/MissingPreconditionException.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/PearsonsCorrelation$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/PearsonsCorrelation$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/PearsonsCorrelation$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/PearsonsCorrelation$4.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/PearsonsCorrelation$5.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/PearsonsCorrelation$6.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/PearsonsCorrelation$Implementation.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/PearsonsCorrelation.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/SpearmanRankCorrelation$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/SpearmanRankCorrelation$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/algorithms/SpearmanRankCorrelation.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/gadgets/DataContainer$MaskType.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/gadgets/DataContainer.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/gadgets/MaskFactory$CombinationMode.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/gadgets/MaskFactory.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/gadgets/Statistics.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/gadgets/ThresholdMode.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/net/imglib2/PredicateCursor.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/net/imglib2/TwinCursor.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/net/imglib2/algorithm/math/ImageStatistics.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/net/imglib2/predicate/MaskPredicate.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/net/imglib2/predicate/Predicate.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/results/EasyDisplay.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/results/NamedContainer.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/results/PDFWriter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/results/ResultHandler.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/results/SingleWindowDisplay$1.class> 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<https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/tests/LiICQTest.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/tests/MandersColocalizationTest.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/tests/MaskAndRoiTest.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/tests/PearsonsCorrelationTest.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/tests/SpearmanRankTest.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/tests/StatisticsTest.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Colocalisation_Analysis/tests/TestImageAccessor.class> src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/mandersI.tiff src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/redZstack.tif src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/colocsample1b-green.tif src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/mandersH.tiff src-plugins/Colocalisation_Analysis/tests/Data/mandersA.tiff src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/plugins.config src-plugins/Colocalisation_Analysis/tests/Data/high_random_overlap1.tif src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/mandersF.tiff src-plugins/Colocalisation_Analysis/tests/Data/SineXCosY.ijm src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/high_random_overlap2.tif src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/random-dots-smoothed.ijm src-plugins/Colocalisation_Analysis/tests/Data/mandersB.tiff src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/mandersG.tiff src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/greenZstack.tif src-plugins/Colocalisation_Analysis/tests/Data/syntheticNegCh2.tif src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/mandersE.tiff src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/syntheticNegCh1.tif src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/mandersC.tiff src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/mandersD.tiff src-plugins/Colocalisation_Analysis/ src-plugins/Colocalisation_Analysis/tests/Data/colocsample1b-red.tif
Checking prerequisites of (fiji.build.CompileJar) plugins/Extended_Depth_Field.jar ...
Checking prerequisites of (fiji.build.CompileJar) jars/wavelets.jar <- src-plugins/...
jars/wavelets.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) jars/wavelets.jar <- src-plugins/...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/jars/wavelets> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/wavelets/wavelets/WaveSpline.java src-plugins/wavelets/wavelets/WaveSplineFilter.java src-plugins/wavelets/wavelets/ComplexWaveFilter.java src-plugins/wavelets/wavelets/ComplexWavelet.java src-plugins/wavelets/wavelets/ImageAccess.java
Making jars/wavelets.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/jars/wavelets/wavelets/ComplexWaveFilter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/jars/wavelets/wavelets/ComplexWavelet.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/jars/wavelets/wavelets/ImageAccess.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/jars/wavelets/wavelets/WaveSpline.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/jars/wavelets/wavelets/WaveSplineFilter.class>
plugins/Extended_Depth_Field.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/Extended_Depth_Field.jar ...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field> -source 1.5 -target 1.5 -classpath jars/ij.jar:jars/imageware.jar:jars/wavelets.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/Extended_Depth_Field/edfgui/MySlider.java src-plugins/Extended_Depth_Field/edf/Tools.java src-plugins/Extended_Depth_Field/edf/Variance.java src-plugins/Extended_Depth_Field/edf/Color2BW.java src-plugins/Extended_Depth_Field/edf/EdfRealWavelets.java src-plugins/Extended_Depth_Field/edfgui/ThreadTopoProc.java src-plugins/Extended_Depth_Field/edfgui/AboutDialog.java src-plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D.java src-plugins/Extended_Depth_Field/edf/Sobel.java src-plugins/Extended_Depth_Field/edf/LogSingleton.java src-plugins/Extended_Depth_Field/edf/EdfVariance.java src-plugins/Extended_Depth_Field/edfgui/ExtendedDepthOfField.java src-plugins/Extended_Depth_Field/edfgui/AbstractDialog.java src-plugins/Extended_Depth_Field/edfgui/LogPane.java src-plugins/Extended_Depth_Field/edf/ProcessTopology.java src-plugins/Extended_Depth_Field/edfgui/ThreadEdf.java src-plugins/Extended_Depth_Field/edf/EdfComplexWavelets.java src-plugins/Extended_Depth_Field/EDF_Viewer3D_.java src-plugins/Extended_Depth_Field/EDF_Expert_.java src-plugins/Extended_Depth_Field/Demo.java src-plugins/Extended_Depth_Field/edf/EdfSobel.java src-plugins/Extended_Depth_Field/EDF_Easy_.java src-plugins/Extended_Depth_Field/edfgui/SimpleTableModel.java src-plugins/Extended_Depth_Field/edf/AbstractEdfAlgorithm.java src-plugins/Extended_Depth_Field/edf/PostProcessing.java src-plugins/Extended_Depth_Field/edf/EdfWaveletMaximumModulus.java src-plugins/Extended_Depth_Field/edfgui/BasicDialog.java src-plugins/Extended_Depth_Field/edf/MorphologicalOperators.java src-plugins/Extended_Depth_Field/edfgui/AdvancedDialog.java src-plugins/Extended_Depth_Field/edfgui/Parameters.java src-plugins/Extended_Depth_Field/edfgui/MyTableRenderer.java
Note: src-plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making plugins/Extended_Depth_Field.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/Demo.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/EDF_Easy_.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/EDF_Expert_.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/EDF_Viewer3D_.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/AbstractEdfAlgorithm.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/Color2BW.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/EdfComplexWavelets.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/EdfRealWavelets.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/EdfSobel.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/EdfVariance.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/EdfWaveletMaximumModulus.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/LogSingleton.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/MorphologicalOperators.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/PostProcessing.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/ProcessTopology.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/Sobel.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/Tools.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edf/Variance.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/AboutDialog.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/AbstractDialog$TimerListener.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/AbstractDialog.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/AdvancedDialog$MyVerifier.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/AdvancedDialog.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/BasicDialog.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/ExtendedDepthOfField.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/LogPane.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/MySlider.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/MyTableRenderer.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/Parameters.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/SimpleTableModel.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/ThreadEdf.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/edfgui/ThreadTopoProc.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$Cube.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$CustomWindow$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$CustomWindow.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$ImageRegion.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$Lines.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$Lut.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$Misc.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$Picture.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$PlotVal.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$TextField.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D$Transform.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Extended_Depth_Field/surfacemap/SurfaceMap3D.class> src-plugins/Extended_Depth_Field/ src-plugins/Extended_Depth_Field/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/Helmholtz_Analysis.jar <-...
plugins/Helmholtz_Analysis.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/Helmholtz_Analysis.jar <-...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Helmholtz_Analysis> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/Helmholtz_Analysis/Helmholtz_Analysis.java
Making plugins/Helmholtz_Analysis.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Helmholtz_Analysis/Helmholtz_Analysis.class> src-plugins/Helmholtz_Analysis/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/Volume_Viewer.jar <- src-...
plugins/Volume_Viewer.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/Volume_Viewer.jar <- src-...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/Volume_Viewer/Volume_Viewer.java
Making plugins/Volume_Viewer.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$Cube.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$CustomWindow$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$CustomWindow$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$CustomWindow$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$CustomWindow$4.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$CustomWindow$5.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$CustomWindow$6.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$CustomWindow$7.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$CustomWindow$TurnThread.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$CustomWindow.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$ImageRegion.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$Lines.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$Lut.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$Misc.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$Picture.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$TextField.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$Transform.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer$Volume.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Volume_Viewer/Volume_Viewer.class>
Checking prerequisites of (fiji.build.CompileJar) plugins/Record_Screen.jar <- src-...
Building (fiji.build.CompileJar) plugins/Record_Screen.jar <- src-...
Making plugins/Record_Screen.jar from src-plugins/Record_Screen/ src-plugins/Record_Screen/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/Action_Bar.jar <- src-plu...
plugins/Action_Bar.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/Action_Bar.jar <- src-plu...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Action_Bar> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/Action_Bar/Action_Bar.java
Making plugins/Action_Bar.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Action_Bar/Action_Bar$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Action_Bar/Action_Bar$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Action_Bar/Action_Bar$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Action_Bar/Action_Bar.class> src-plugins/Action_Bar/ActionBar/icons/_StickyBarDemo1/ledred.png src-plugins/Action_Bar/ActionBar/icons/rotation_bar/rotation-2.gif src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/player_start.png src-plugins/Action_Bar/ActionBar/color_and_merge.txt src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/filenew.png src-plugins/Action_Bar/ActionBar/icons/_Demo/source.png src-plugins/Action_Bar/ActionBar/codeBar_.txt src-plugins/Action_Bar/ActionBar/icons/_StickyBarDemo1/invert.png src-plugins/Action_Bar/ActionBar/icons/_Demo/lsm.png src-plugins/Action_Bar/ActionBar/icons/rotation_bar/rotation-1.gif src-plugins/Action_Bar/ActionBar/icons/_lookuptables/magenta.png src-plugins/Action_Bar/ActionBar/icons/_ZoomBar/zoom-in.gif src-plugins/Action_Bar/ActionBar/ez_counters.txt src-plugins/Action_Bar/ActionBar/_Demo.txt src-plugins/Action_Bar/ActionBar/icons/_StickyBarDemo1/messagebox_info.png src-plugins/Action_Bar/ActionBar/icons/_ZoomBar/zoom-out.gif src-plugins/Action_Bar/ActionBar/icons/_StickyBarDemo2/saveas.png src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/reload.png src-plugins/Action_Bar/ActionBar/icons/_lookuptables/cyan.png src-plugins/Action_Bar/ActionBar/demo_counter.txt src-plugins/Action_Bar/ActionBar/icons/_Demo/email.png src-plugins/Action_Bar/ActionBar/icons/_Demo/kview.png src-plugins/Action_Bar/ActionBar/rotation_bar.txt src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/next.png src-plugins/Action_Bar/ActionBar/color_mixer.txt src-plugins/Action_Bar/ActionBar/icons/_Demo/rotations.gif src-plugins/Action_Bar/ActionBar/icons/rotation_bar/rotation-3.gif src-plugins/Action_Bar/ActionBar/icons/_lookuptables/ice.png src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/player_end.png src-plugins/Action_Bar/ActionBar/icons/rotation_bar/rotation-4.gif src-plugins/Action_Bar/ActionBar/icons/_Demo/button_cancel.png src-plugins/Action_Bar/ActionBar/icons/_StickyBarDemo1/ledlightblue.png src-plugins/Action_Bar/ActionBar/icons/_StickyBarDemo1/viewmag+.png src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/help.png src-plugins/Action_Bar/ActionBar/Macro.txt src-plugins/Action_Bar/plugins.config src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/player_stop.png src-plugins/Action_Bar/ActionBar/icons/_StickyBarDemo1/viewmag-.png src-plugins/Action_Bar/ActionBar/icons/_lookuptables/yellow.png src-plugins/Action_Bar/ActionBar/icons/_ZoomBar/zoom-100.gif src-plugins/Action_Bar/ActionBar/icons/rotation_bar/rotation-5.gif src-plugins/Action_Bar/ActionBar/icons/_StickyBarDemo1/ledgray.png src-plugins/Action_Bar/ActionBar/_AnimationBar.txt src-plugins/Action_Bar/ActionBar/_StickyBarDemo1.txt src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/player_play.png src-plugins/Action_Bar/ActionBar/icons/_Demo/aktion.png src-plugins/Action_Bar/ActionBar/icons/_lookuptables/blue.png src-plugins/Action_Bar/ActionBar/icons/_lookuptables/red.png src-plugins/Action_Bar/ActionBar/icons/_Demo/reload.png src-plugins/Action_Bar/ActionBar/icons/_lookuptables/grays.png src-plugins/Action_Bar/ActionBar/_StickyBarDemo2.txt src-plugins/Action_Bar/ActionBar/design_action_bar.txt src-plugins/Action_Bar/ActionBar/_lookuptables.txt src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/previous.png src-plugins/Action_Bar/ActionBar/icons/_Demo/kcoloredit.png src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/cut.png src-plugins/Action_Bar/ActionBar/icons/_StickyBarDemo1/ledgreen.png src-plugins/Action_Bar/ActionBar/icons/_lookuptables/rainbow.png src-plugins/Action_Bar/ActionBar/icons/_lookuptables/red_green.png src-plugins/Action_Bar/ActionBar/icons/_Demo/kweather.png src-plugins/Action_Bar/ActionBar/_ZoomBar.txt src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/kpager.jpg src-plugins/Action_Bar/ src-plugins/Action_Bar/ActionBar/icons/_lookuptables/hi_lo.png src-plugins/Action_Bar/ActionBar/createAB.txt src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/konqsidebar_mediaplayer.png src-plugins/Action_Bar/ActionBar/icons/_lookuptables/green.png src-plugins/Action_Bar/ActionBar/icons/_AnimationBar/kpager.png src-plugins/Action_Bar/ActionBar/icons/_StickyBarDemo2/resize.png src-plugins/Action_Bar/ActionBar/icons/_lookuptables/fire.png src-plugins/Action_Bar/ActionBar/icons/_Demo/snapshot.png src-plugins/Action_Bar/ActionBar/_Magic_Montage2.txt
Checking prerequisites of (fiji.build.CompileJar) jars/weave_jy2java.jar <- src-plu...
jars/weave_jy2java.jar is not up-to-date because of plugins/Refresh_Javas.jar
Building (fiji.build.CompileJar) jars/weave_jy2java.jar <- src-plu...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/jars/weave_jy2java> -source 1.5 -target 1.5 -classpath plugins/Refresh_Javas.jar:jars/fiji-scripting.jar:jars/fiji-compat.jar:jars/ij.jar:plugins/Script_Editor.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/weave_jy2java/fiji/scripting/Weaver.java
Note: src-plugins/weave_jy2java/fiji/scripting/Weaver.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making jars/weave_jy2java.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/jars/weave_jy2java/fiji/scripting/Weaver$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/jars/weave_jy2java/fiji/scripting/Weaver$Type.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/jars/weave_jy2java/fiji/scripting/Weaver.class>
Checking prerequisites of (fiji.build.CompileJar) plugins/MTrack2_.jar <- src-plugi...
plugins/MTrack2_.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/MTrack2_.jar <- src-plugi...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/MTrack2_> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/MTrack2_/MTrack2_.java
Note: src-plugins/MTrack2_/MTrack2_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: src-plugins/MTrack2_/MTrack2_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making plugins/MTrack2_.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/MTrack2_/MTrack2_$particle.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/MTrack2_/MTrack2_.class> src-plugins/MTrack2_/ src-plugins/MTrack2_/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/Calculator_Plus.jar <- sr...
plugins/Calculator_Plus.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/Calculator_Plus.jar <- sr...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Calculator_Plus> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/Calculator_Plus/Calculator_Plus.java
Making plugins/Calculator_Plus.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Calculator_Plus/Calculator_Plus.class> src-plugins/Calculator_Plus/ src-plugins/Calculator_Plus/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/Interactive_3D_Surface_Pl...
plugins/Interactive_3D_Surface_Plot.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/Interactive_3D_Surface_Pl...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/Interactive_3D_Surface_Plot/jRenderer3D/PointsPlot.java src-plugins/Interactive_3D_Surface_Plot/jRenderer3D/Transform.java src-plugins/Interactive_3D_Surface_Plot/jRenderer3D/Text3D.java src-plugins/Interactive_3D_Surface_Plot/jRenderer3D/JRenderer3D.java src-plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot.java src-plugins/Interactive_3D_Surface_Plot/jRenderer3D/Point3D.java src-plugins/Interactive_3D_Surface_Plot/jRenderer3D/Misc.java src-plugins/Interactive_3D_Surface_Plot/jRenderer3D/Lut.java src-plugins/Interactive_3D_Surface_Plot/jRenderer3D/SurfacePlot.java src-plugins/Interactive_3D_Surface_Plot/jRenderer3D/Line3D.java src-plugins/Interactive_3D_Surface_Plot/jRenderer3D/SurfacePlotData.java src-plugins/Interactive_3D_Surface_Plot/jRenderer3D/Volume.java
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making plugins/Interactive_3D_Surface_Plot.jar with main-class Interactive_3D_Surface_Plot from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$10.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$11.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$12.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$13.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$14.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$15.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$16.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$17.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$4.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$5.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$6.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$7.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$8.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$9.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot$ImageRegion.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/Interactive_3D_Surface_Plot.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/jRenderer3D/JRenderer3D.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/jRenderer3D/Line3D.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/jRenderer3D/Lut.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/jRenderer3D/Misc.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/jRenderer3D/Point3D.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/jRenderer3D/PointsPlot.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/jRenderer3D/SurfacePlot.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/jRenderer3D/SurfacePlotData.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/jRenderer3D/Text3D.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/jRenderer3D/Transform.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Interactive_3D_Surface_Plot/jRenderer3D/Volume.class> src-plugins/Interactive_3D_Surface_Plot/ src-plugins/Interactive_3D_Surface_Plot/plugins.config
Checking prerequisites of (fiji.build.SubFake) jars/imglib2-algorithms-gpl.jar <- j...
Building (fiji.build.SubFake) jars/imglib2-algorithms-gpl.jar <- j...
Checking prerequisites of (fiji.build.ExecuteProgram) jars/imglib2-algorithms-gpl.j...
Building (fiji.build.ExecuteProgram) jars/imglib2-algorithms-gpl.j...
Executing: 'sh' './bin/ImageJ.sh' '--update' 'update' 'jars/imglib2-algorithms-gpl.jar'
Updating the Fiji database (Updating from Fiji site) 
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Updating from Fiji site done
Done: Updating the Fiji database

Czech Summer (jars/imglib2-algorithms-gpl.jar) 
jars/imglib2-algorithms-gpl.jar done
Czech Summer (jars/Jama.jar) 
jars/Jama.jar done
Czech Summer (jars/mpicbg.jar) 
jars/mpicbg.jar done
Czech Summer (jars/edu_mines_jtk.jar) 
jars/edu_mines_jtk.jar done
Czech Summer (jars/junit.jar) 
jars/junit.jar done
Czech Summer (jars/imglib2.jar) 
jars/imglib2.jar done
Czech Summer (jars/javac.jar) 
jars/javac.jar done
Czech Summer (jars/ij.jar) 
jars/ij.jar done
Czech Summer (jars/imglib2-algorithms.jar) 
jars/imglib2-algorithms.jar done
Done: Czech Summer

Downloading... (jars/imglib2-algorithms-gpl.jar) 
jars/imglib2-algorithms-gpl.jar done
Done: Downloading...

Installed jars/imglib2-algorithms-gpl.jar
Skipping locally-modified jars/Jama.jar
Downloading... (jars/mpicbg.jar) 
jars/mpicbg.jar done
Done: Downloading...

Installed jars/mpicbg.jar
Not updating jars/edu_mines_jtk.jar (INSTALLED)
Not updating jars/junit.jar (INSTALLED)
Not updating jars/imglib2.jar (INSTALLED)
Skipping locally-modified jars/javac.jar
Not updating jars/ij.jar (INSTALLED)
Not updating jars/imglib2-algorithms.jar (INSTALLED)
Checking prerequisites of (fiji.build.CompileJar) plugins/QuickPALM_.jar <- src-plu...
plugins/QuickPALM_.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/QuickPALM_.jar <- src-plu...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/QuickPALM_/QuickPALM/package-info.java src-plugins/QuickPALM_/QuickPALM/Run_MyMacro.java src-plugins/QuickPALM_/QuickPALM/Create_3D_calibration.java src-plugins/QuickPALM_/QuickPALM/Stop_processing.java src-plugins/QuickPALM_/QuickPALM/MyDialogs.java src-plugins/QuickPALM_/QuickPALM/Load_particles_tableFromImg.java src-plugins/QuickPALM_/QuickPALM/Correct_Drift.java src-plugins/QuickPALM_/QuickPALM/Analyse_Particles.java src-plugins/QuickPALM_/QuickPALM/Reconstruct_Dataset.java src-plugins/QuickPALM_/QuickPALM/Save_particles_table2img.java src-plugins/QuickPALM_/QuickPALM/Correct_Drift2.java src-plugins/QuickPALM_/QuickPALM/MyIO.java src-plugins/QuickPALM_/QuickPALM/ReconstructionViewer.java src-plugins/QuickPALM_/QuickPALM/ParticleSaver.java src-plugins/QuickPALM_/QuickPALM/MyFunctions.java
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Making plugins/QuickPALM_.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/Analyse_Particles.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/Correct_Drift.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/Correct_Drift2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/Create_3D_calibration.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/Load_particles_tableFromImg.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/MyDialogs.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/MyFunctions.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/MyIO.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/ParticleSaver.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/ProcessFrame.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/Reconstruct_Dataset.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/ReconstructionViewer.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/Run_MyMacro.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/Save_particles_table2img.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/Stop_processing.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/ThreadedLoader.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/ThreadedSaver.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/ViewerUpdate.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/QuickPALM_/QuickPALM/ViewerUpdateShort.class> src-plugins/QuickPALM_/plugins.config src-plugins/QuickPALM_/ src-plugins/QuickPALM_/QuickPALM/Update_.txt src-plugins/QuickPALM_/ src-plugins/QuickPALM_/QuickPALM/Correct_Drift_NoBeads.txt src-plugins/QuickPALM_/QuickPALM/Sort_particles.txt src-plugins/QuickPALM_/QuickPALM/Fast_VirtualStack_Opener.txt src-plugins/QuickPALM_/ src-plugins/QuickPALM_/QuickPALM/About_.txt
Checking prerequisites of (fiji.build.CompileJar) plugins/PIV_analyser.jar <- src-p...
plugins/PIV_analyser.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/PIV_analyser.jar <- src-p...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/PIV_analyser> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/PIV_analyser/DateUtils.java src-plugins/PIV_analyser/Stopwatch.java src-plugins/PIV_analyser/PIV_analyser.java src-plugins/PIV_analyser/PIVAnalyserTestDrive.java
Making plugins/PIV_analyser.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/PIV_analyser/DateUtils.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/PIV_analyser/PIVAnalyserTestDrive.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/PIV_analyser/PIV_analyser$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/PIV_analyser/PIV_analyser$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/PIV_analyser/PIV_analyser$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/PIV_analyser/PIV_analyser$PIVresult.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/PIV_analyser/PIV_analyser$PairingParam.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/PIV_analyser/PIV_analyser$WINDOW_SIZE.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/PIV_analyser/PIV_analyser.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/PIV_analyser/Stopwatch.class> src-plugins/PIV_analyser/ src-plugins/PIV_analyser/plugins.config
Checking prerequisites of (fiji.build.SubFake) jars/imglib-scripting.jar <- jars/ij...
Building (fiji.build.SubFake) jars/imglib-scripting.jar <- jars/ij...
Checking prerequisites of (fiji.build.CompileJar) plugins/Stack_Manipulation.jar <-...
plugins/Stack_Manipulation.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/Stack_Manipulation.jar <-...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Stack_Manipulation> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/Stack_Manipulation/Slice_Remover.java src-plugins/Stack_Manipulation/Stack_Splitter.java src-plugins/Stack_Manipulation/Kalman_Filter.java src-plugins/Stack_Manipulation/DeInterleave_.java src-plugins/Stack_Manipulation/Stack_Interleaver.java src-plugins/Stack_Manipulation/Slice_Keeper.java src-plugins/Stack_Manipulation/Stack_Sorter.java
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: src-plugins/Stack_Manipulation/Kalman_Filter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making plugins/Stack_Manipulation.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Stack_Manipulation/DeInterleave_.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Stack_Manipulation/Kalman_Filter$settingBar$fpsListener.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Stack_Manipulation/Kalman_Filter$settingBar$gainListener.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Stack_Manipulation/Kalman_Filter$settingBar.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Stack_Manipulation/Kalman_Filter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Stack_Manipulation/Slice_Keeper.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Stack_Manipulation/Slice_Remover.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Stack_Manipulation/StackSorter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Stack_Manipulation/Stack_Interleaver.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Stack_Manipulation/Stack_Sorter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Stack_Manipulation/Stack_Splitter.class> src-plugins/Stack_Manipulation/ src-plugins/Stack_Manipulation/Stack_Sorter_License.txt src-plugins/Stack_Manipulation/ src-plugins/Stack_Manipulation/Stack_Sorter_readme.txt src-plugins/Stack_Manipulation/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/Trainable_Segmentation.ja...
plugins/Trainable_Segmentation.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/Trainable_Segmentation.ja...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation> -source 1.5 -target 1.5 -classpath jars/ij.jar:jars/weka.jar:plugins/Stitching_.jar:jars/fiji-lib.jar:plugins/Anisotropic_Diffusion_2D.jar:jars/Jama.jar:jars/VIB-lib.jar:jars/commons-math.jar:jars/imglib.jar:jars/imglib-ij.jar:jars/imglib-algorithms.jar:jars/imagescience.jar:jars/imglib2.jar:jars/imglib2-ij.jar:jars/imglib2-algorithms.jar:java/linux/jdk1.6.0_24/jre/lib/ext/j3dcore.jar:java/linux/jdk1.6.0_24/jre/lib/ext/j3dutils.jar:java/linux/jdk1.6.0_24/jre/lib/ext/vecmath.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/Trainable_Segmentation/ai/VotesCollector.java src-plugins/Trainable_Segmentation/trainableSegmentation/utils/Utils.java src-plugins/Trainable_Segmentation/trainableSegmentation/Trainable_Segmentation.java src-plugins/Trainable_Segmentation/trainableSegmentation/filters/Lipschitz_.java src-plugins/Trainable_Segmentation/trainableSegmentation/metrics/RandError.java src-plugins/Trainable_Segmentation/trainableSegmentation/metrics/PixelError.java src-plugins/Trainable_Segmentation/trainableSegmentation/metrics/WarpingError.java src-plugins/Trainable_Segmentation/trainableSegmentation/metrics/ClassificationStatistics.java src-plugins/Trainable_Segmentation/hr/irb/fastRandomForest/VotesCollector.java src-plugins/Trainable_Segmentation/ai/BalancedRandomForest.java src-plugins/Trainable_Segmentation/trainableSegmentation/filters/Kuwahara.java src-plugins/Trainable_Segmentation/hr/irb/fastRandomForest/FastRandomForest.java src-plugins/Trainable_Segmentation/trainableSegmentation/FeatureStack.java src-plugins/Trainable_Segmentation/trainableSegmentation/ImageOverlay.java src-plugins/Trainable_Segmentation/ai/InformationGainFunction.java src-plugins/Trainable_Segmentation/ai/Splitter.java src-plugins/Trainable_Segmentation/trainableSegmentation/FeatureStackArray.java src-plugins/Trainable_Segmentation/ai/GiniFunction.java src-plugins/Trainable_Segmentation/trainableSegmentation/FeatureStack3D.java src-plugins/Trainable_Segmentation/hr/irb/fastRandomForest/FastRfBagging.java src-plugins/Trainable_Segmentation/trainableSegmentation/metrics/Metrics.java src-plugins/Trainable_Segmentation/trainableSegmentation/metrics/AdjustedRandError.java src-plugins/Trainable_Segmentation/hr/irb/fastRandomForest/FastRandomTree.java src-plugins/Trainable_Segmentation/hr/irb/fastRandomForest/DataCache.java src-plugins/Trainable_Segmentation/trainableSegmentation/filters/Entropy_Filter.java src-plugins/Trainable_Segmentation/trainableSegmentation/RoiListOverlay.java src-plugins/Trainable_Segmentation/ai/AttributeClassPair.java src-plugins/Trainable_Segmentation/trainableSegmentation/metrics/WarpingResults.java src-plugins/Trainable_Segmentation/trainableSegmentation/metrics/ClusteredWarpingMismatches.java src-plugins/Trainable_Segmentation/hr/irb/fastRandomForest/FastRfUtils.java src-plugins/Trainable_Segmentation/ai/SplitFunction.java src-plugins/Trainable_Segmentation/trainableSegmentation/Weka_Segmentation.java src-plugins/Trainable_Segmentation/trainableSegmentation/utils/PrincipalComponentAnalysis.java src-plugins/Trainable_Segmentation/trainableSegmentation/WekaSegmentation.java src-plugins/Trainable_Segmentation/hr/irb/fastRandomForest/Benchmark.java src-plugins/Trainable_Segmentation/hr/irb/fastRandomForest/SplitCriteria.java src-plugins/Trainable_Segmentation/ai/BalancedRandomTree.java
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making plugins/Trainable_Segmentation.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/AttributeClassPair.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/BalancedRandomForest$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/BalancedRandomForest.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/BalancedRandomTree$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/BalancedRandomTree$BaseNode.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/BalancedRandomTree$InteriorNode.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/BalancedRandomTree$LeafNode.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/BalancedRandomTree.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/GiniFunction$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/GiniFunction.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/InformationGainFunction$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/InformationGainFunction.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/SplitFunction.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/Splitter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Trainable_Segmentation/ai/VotesCollector.class> 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src-plugins/Trainable_Segmentation/ src-plugins/Trainable_Segmentation/README-FastRandomForest.txt src-plugins/Trainable_Segmentation/ src-plugins/Trainable_Segmentation/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/FS_Align_TrakEM2.jar <- s...
plugins/FS_Align_TrakEM2.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/FS_Align_TrakEM2.jar <- s...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2> -source 1.5 -target 1.5 -classpath jars/ij.jar:plugins/TrakEM2_.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/FS_Align_TrakEM2/fsalign/FSAlignListener.java src-plugins/FS_Align_TrakEM2/fsalign/FS_Align_TrakEM2.java src-plugins/FS_Align_TrakEM2/fsalign/FolderWatcher.java src-plugins/FS_Align_TrakEM2/fsalign/ImageListener.java src-plugins/FS_Align_TrakEM2/fsalign/FileListener.java
Making plugins/FS_Align_TrakEM2.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/FSAlignListener$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/FSAlignListener$PatchSieve.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/FSAlignListener.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/FS_Align_TrakEM2$DoneListener.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/FS_Align_TrakEM2$RegexpListener.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/FS_Align_TrakEM2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/FileListener.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/FolderWatcher$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/FolderWatcher$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/FolderWatcher$FileFilterAdapter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/FolderWatcher$FolderFilter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/FolderWatcher.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/ImageListener$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/ImageListener$FileModifiedComparator.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/FS_Align_TrakEM2/fsalign/ImageListener.class> src-plugins/FS_Align_TrakEM2/ src-plugins/FS_Align_TrakEM2/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/LSM_Reader.jar <- src-plu...
plugins/LSM_Reader.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/LSM_Reader.jar <- src-plu...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Reader> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/LSM_Reader/org/imagearchive/lsm/reader/info/ChannelNamesAndColors.java src-plugins/LSM_Reader/org/imagearchive/lsm/reader/Reader.java src-plugins/LSM_Reader/LSM_Reader.java src-plugins/LSM_Reader/org/imagearchive/lsm/reader/info/ImageDirectory.java src-plugins/LSM_Reader/org/imagearchive/lsm/reader/info/CZLSMInfo.java src-plugins/LSM_Reader/org/imagearchive/lsm/reader/info/LSMFileInfo.java
Note: src-plugins/LSM_Reader/org/imagearchive/lsm/reader/Reader.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making plugins/LSM_Reader.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Reader/LSM_Reader.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Reader/org/imagearchive/lsm/reader/Reader.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Reader/org/imagearchive/lsm/reader/info/CZLSMInfo.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Reader/org/imagearchive/lsm/reader/info/ChannelNamesAndColors.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Reader/org/imagearchive/lsm/reader/info/ImageDirectory.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Reader/org/imagearchive/lsm/reader/info/LSMFileInfo.class> src-plugins/LSM_Reader/ src-plugins/LSM_Reader/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/TopoJ_.jar <- src-plugins...
plugins/TopoJ_.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/TopoJ_.jar <- src-plugins...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TopoJ_> -source 1.5 -target 1.5 -classpath jars/ij.jar:jars/Jama.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/TopoJ_/Compute_Topography.java src-plugins/TopoJ_/Remove_Slope.java
Note: src-plugins/TopoJ_/Remove_Slope.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Making plugins/TopoJ_.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TopoJ_/Compute_Topography.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TopoJ_/Remove_Slope.class> src-plugins/TopoJ_/ src-plugins/TopoJ_/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/Color_Inspector_3D.jar <-...
plugins/Color_Inspector_3D.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/Color_Inspector_3D.jar <-...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/Color_Inspector_3D/Color_Inspector_3D.java src-plugins/Color_Inspector_3D/ColorKLT.java src-plugins/Color_Inspector_3D/SymMat.java src-plugins/Color_Inspector_3D/KLT.java
Note: src-plugins/Color_Inspector_3D/Color_Inspector_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Making plugins/Color_Inspector_3D.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/ColorKLT.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$ColHash.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$Cube.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$CustomWindow$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$CustomWindow$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$CustomWindow$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$CustomWindow$TurnThread.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$CustomWindow.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$ImageRegion.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$Lines.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$Median_Cut.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$Menu$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$Menu.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$Misc.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$Picture.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$TextField.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$WuCq$Box.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D$WuCq.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/Color_Inspector_3D.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/KLT$EigenRaum.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/KLT.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Color_Inspector_3D/SymMat.class> src-plugins/Color_Inspector_3D/ src-plugins/Color_Inspector_3D/images/info.jpg src-plugins/Color_Inspector_3D/images/baboon400.jpg src-plugins/Color_Inspector_3D/images/verlauf2.jpg src-plugins/Color_Inspector_3D/images/cube6.png src-plugins/Color_Inspector_3D/ src-plugins/Color_Inspector_3D/images/titel.jpg src-plugins/Color_Inspector_3D/images/sail.gif src-plugins/Color_Inspector_3D/images/col65k.png src-plugins/Color_Inspector_3D/images/pool.jpg src-plugins/Color_Inspector_3D/images/lilo.jpg src-plugins/Color_Inspector_3D/ src-plugins/Color_Inspector_3D/images/webcolors.gif src-plugins/Color_Inspector_3D/plugins.config
ignoring duplicate entry: plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/Algorithm_Launcher.jar <-...
plugins/Algorithm_Launcher.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/Algorithm_Launcher.jar <-...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Algorithm_Launcher> -source 1.5 -target 1.5 -classpath jars/ij.jar:jars/imglib.jar:jars/imglib-ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/Algorithm_Launcher/AlgorithmInfo.java src-plugins/Algorithm_Launcher/AlgorithmParser.java src-plugins/Algorithm_Launcher/AlgorithmLauncher.java
Note: src-plugins/Algorithm_Launcher/AlgorithmInfo.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making plugins/Algorithm_Launcher.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Algorithm_Launcher/AlgorithmInfo.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Algorithm_Launcher/AlgorithmLauncher.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Algorithm_Launcher/AlgorithmParser.class> src-plugins/Algorithm_Launcher/ src-plugins/Algorithm_Launcher/plugins.config src-plugins/Algorithm_Launcher/algorithms.config
Checking prerequisites of (fiji.build.CompileJar) plugins/LSM_Toolbox.jar <- src-pl...
plugins/LSM_Toolbox.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/LSM_Toolbox.jar <- src-pl...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox> -source 1.5 -target 1.5 -classpath jars/ij.jar:plugins/LSM_Reader.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/TimeStamps.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/AllKnownFilter.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/DataChannel.java src-plugins/LSM_Toolbox/LSM_Toolbox.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/DomXmlExporter.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/BeamSplitter.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/ChannelWavelengthRange.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/GUIMenuItem.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/Track.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/ReaderToolkit.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ListBoxImage.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/StampUtils.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/Recording.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/IlluminationChannel.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/GUIMaker.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/BatchDialog.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/DataType.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/Reader.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/DetectionChannel.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/EventList.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/AboutDialog.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/ServiceMediator.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/ScanInfo.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/TreeTableModel.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/Laser.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ImagePreview.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/InfoNode.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/InfoFrame.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/LsmImageTableModel.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/BatchConverter.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/CZLSMInfoExtended.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/CPDragAndDrop.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ImageFocusListener.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/BatchFilter.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/Timer.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/MasterModel.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/Marker.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/SelectImageDialog.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/LUTInfo.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/NotesDialog.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/HtmlPageLoader.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/Event.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/GUIButton.java src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ImageFilter.java
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making plugins/LSM_Toolbox.jar with main-class org.imagearchive.lsm.toolbox.gui.AboutDialog from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/LSM_Toolbox.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/BatchConverter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/DomXmlExporter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/MasterModel.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/Reader$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/Reader$ScanInfoTag.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/Reader.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/ReaderToolkit.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/ServiceMediator.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/StampUtils.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/AboutDialog$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/AboutDialog$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/AboutDialog.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/AllKnownFilter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/BatchDialog$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/BatchDialog$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/BatchDialog$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/BatchDialog$4.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/BatchDialog$5.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/BatchDialog.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/BatchFilter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/CPDragAndDrop$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/CPDragAndDrop.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$10.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$11.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$12.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$13.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$14.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$15$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$15.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$16.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$17.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$18.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$19.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$4$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$4.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$5.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$6.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$7.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$8.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame$9.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ControlPanelFrame.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame$10.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame$11.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame$4.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame$5.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame$6.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame$7.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame$8.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame$9.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/DetailsFrame.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/GUIButton.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/GUIMaker.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/GUIMenuItem.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/HtmlPageLoader.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ImageFilter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ImageFocusListener.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ImagePreview$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ImagePreview.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/InfoFrame$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/InfoFrame$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/InfoFrame$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/InfoFrame$4.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/InfoFrame$5.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/InfoFrame$6.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/InfoFrame.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/InfoNode.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/ListBoxImage.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/LsmImageTableModel.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/NotesDialog$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/NotesDialog.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/SelectImageDialog$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/SelectImageDialog$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/SelectImageDialog.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/TreeTableModel.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/CZLSMInfoExtended.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/ChannelWavelengthRange.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/Event.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/EventList.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/LUTInfo.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/TimeStamps.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/BeamSplitter.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/DataChannel.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/DataType.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/DetectionChannel.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/IlluminationChannel.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/Laser.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/Marker.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/Recording.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/ScanInfo.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/Timer.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/info/scaninfo/Track.class> src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/zstamp.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/minus.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/licence.txt src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/closeb.jpg src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/infosb.jpg src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/openb.jpg src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/exit.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/main_panel.jpg src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/lgpl.txt src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/dump.png src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/blend.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/opendialog.jpg src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/macros/magic_montage.txt src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/notes.jpg src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/about.htm src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/viewmag.png src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/events.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/disk.jpg src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/tstamp.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/palette.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/build.xml src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/macro.png src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/cancel.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/fileinfos.jpg src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/stampb.jpg src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/plus.jpg src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/helpb.jpg src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/ok.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/changelog.htm src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/fileclose.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/batchb.jpg src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/help.htm src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/find.png src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/filter.png src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/help.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/fileopen.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/batch.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/lstamp.png src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/info.png src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/browse.png src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/browseb.jpg src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/exitb.jpg src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/details.jpg src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/xml.png src-plugins/LSM_Toolbox/plugins.config src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/plus.png src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/images/display.png src-plugins/LSM_Toolbox/ src-plugins/LSM_Toolbox/org/imagearchive/lsm/toolbox/gui/html/images/ibutton.jpg
ignoring duplicate entry: plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/Time_Stamper.jar <- src-p...
plugins/Time_Stamper.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/Time_Stamper.jar <- src-p...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Time_Stamper> -source 1.5 -target 1.5 -classpath jars/ij.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/Time_Stamper/Time_Stamper.java
Making plugins/Time_Stamper.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/Time_Stamper/Time_Stamper.class> src-plugins/Time_Stamper/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/3D_Blob_Segmentation.jar ...
plugins/3D_Blob_Segmentation.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/3D_Blob_Segmentation.jar ...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/3D_Blob_Segmentation> -source 1.5 -target 1.5 -classpath jars/ij.jar:plugins/level_sets.jar:plugins/3D_Viewer.jar:jars/VIB-lib.jar:jars/imglib.jar:java/linux/jdk1.6.0_24/jre/lib/ext/j3dcore.jar:java/linux/jdk1.6.0_24/jre/lib/ext/j3dutils.jar:java/linux/jdk1.6.0_24/jre/lib/ext/vecmath.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/3D_Blob_Segmentation/ij3d/segmentation/Blob_Segmentation_in_3D.java
Note: src-plugins/3D_Blob_Segmentation/ij3d/segmentation/Blob_Segmentation_in_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: src-plugins/3D_Blob_Segmentation/ij3d/segmentation/Blob_Segmentation_in_3D.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making plugins/3D_Blob_Segmentation.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/3D_Blob_Segmentation/ij3d/segmentation/Blob_Segmentation_in_3D$GrowBlob$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/3D_Blob_Segmentation/ij3d/segmentation/Blob_Segmentation_in_3D$GrowBlob$Blob.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/3D_Blob_Segmentation/ij3d/segmentation/Blob_Segmentation_in_3D$GrowBlob.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/3D_Blob_Segmentation/ij3d/segmentation/Blob_Segmentation_in_3D.class> src-plugins/3D_Blob_Segmentation/ src-plugins/3D_Blob_Segmentation/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/registration_3d.jar <- sr...
plugins/registration_3d.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/registration_3d.jar <- sr...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/registration_3d> -source 1.5 -target 1.5 -classpath jars/ij.jar:jars/edu_mines_jtk.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/registration_3d/registration3d/Fast_FourierTransform.java
Making plugins/registration_3d.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/registration_3d/registration3d/Fast_FourierTransform$1.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/registration_3d/registration3d/Fast_FourierTransform$2.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/registration_3d/registration3d/Fast_FourierTransform$3.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/registration_3d/registration3d/Fast_FourierTransform$4.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/registration_3d/registration3d/Fast_FourierTransform$5.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/registration_3d/registration3d/Fast_FourierTransform$6.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/registration_3d/registration3d/Fast_FourierTransform$7.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/registration_3d/registration3d/Fast_FourierTransform$FloatArray.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/registration_3d/registration3d/Fast_FourierTransform$FloatArray2D.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/registration_3d/registration3d/Fast_FourierTransform$FloatArray3D.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/registration_3d/registration3d/Fast_FourierTransform.class> src-plugins/registration_3d/ src-plugins/registration_3d/plugins.config
Checking prerequisites of (fiji.build.CompileJar) plugins/TransformJ_.jar <- src-pl...
plugins/TransformJ_.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) plugins/TransformJ_.jar <- src-pl...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_> -source 1.5 -target 1.5 -classpath jars/ij.jar:jars/imagescience.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext src-plugins/TransformJ_/TJ_About.java src-plugins/TransformJ_/TJ_Translate.java src-plugins/TransformJ_/TJ_Embed.java src-plugins/TransformJ_/TJ_Mirror.java src-plugins/TransformJ_/TJ.java src-plugins/TransformJ_/TJ_Turn.java src-plugins/TransformJ_/TJ_Rotate.java src-plugins/TransformJ_/TJ_Scale.java src-plugins/TransformJ_/TJ_Website.java src-plugins/TransformJ_/TJ_Panel.java src-plugins/TransformJ_/TJ_Options.java src-plugins/TransformJ_/TJ_Crop.java src-plugins/TransformJ_/TJ_Matrix.java src-plugins/TransformJ_/TJ_Affine.java
Note: src-plugins/TransformJ_/TJ_Matrix.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making plugins/TransformJ_.jar from <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJAffine.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJCrop.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJEmbed.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJMirror.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJRotate.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJScale.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJTranslate.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJTurn.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_About.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_Affine.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_Crop.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_Embed.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_Matrix.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_Mirror.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_Options.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_Panel.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_Rotate.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_Scale.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_Translate.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_Turn.class> <https://qa.nest-initiative.org/job/fiji-core/ws/build/plugins/TransformJ_/TJ_Website.class> src-plugins/TransformJ_/ src-plugins/TransformJ_/copyright.txt src-plugins/TransformJ_/ src-plugins/TransformJ_/plugins.config
Building (fiji.build.All) all <- ImageJ fiji jars/ij.jar plugins/l...
++ uname -m
+ test i686 = x86_64
+ PLATFORM=linux
+ ./bin/make-app.py nojre linux
Making app
Copying platform-specific files for linux32 (host platform=linux)
Traceback (most recent call last):
  File "./bin/make-app.py", line 120, in <module>
    copy_platform_specific_files(p)
  File "./bin/make-app.py", line 114, in copy_platform_specific_files
    shutil.copy('precompiled/' + binary, 'Fiji.app/' + binary)
  File "<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jython.jar/Lib/shutil.py",> line 80, in copy
  File "<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jython.jar/Lib/shutil.py",> line 46, in copyfile
IOError: [Errno 2] No such file or directory: 'precompiled/ImageJ-linux32'
Build step 'Execute shell' marked build as failure
Archiving artifacts