[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #509
jenkins at imagej.net
jenkins at imagej.net
Thu Jun 14 07:17:05 CDT 2012
See <http://jenkins.imagej.net/job/Fiji-minimal/509/>
------------------------------------------
[...truncated 158 lines...]
Removing plugins/Video_Editing.jar
Removing plugins/View5D_.jar
Removing plugins/Volume_Viewer.jar
Removing plugins/bUnwarpJ_.jar
Removing plugins/blockmatching_.jar
Removing plugins/ij-ImageIO_.jar
Removing plugins/level_sets.jar
Removing plugins/loci_tools.jar
Removing plugins/mpicbg_.jar
Removing plugins/panorama_.jar
Removing plugins/register_virtual_stack_slices.jar
Removing plugins/registration_3d.jar
Removing src-plugins/Jama/target/
Removing src-plugins/Script_Editor/function.png
Removing src-plugins/Script_Editor/icon.png
Removing src-plugins/Script_Editor/var.png
Removing src-plugins/VIB-lib/target/
Removing src-plugins/fiji-compat/icon.png
Removing src-plugins/fiji-lib/help-cursor.gif
Removing src-plugins/pal-optimization/target/
+ cd fiji
+ sh -x ./Build.sh -Dminimaven.updateinterval=1 --
+ set -a
+ dirname ./Build.sh
+ CWD=.
+ PATHSEP=:
+ uname -s
+ UNAME_S=Linux
+ uname -m
+ platform=linux64
+ java_submodule=linux-amd64
+ look_for_tools_jar /usr/lib64/jvm /usr/lib/jvm
+ test -d /usr/lib64/jvm
+ continue
+ test -d /usr/lib/jvm
+ test -f /usr/lib/jvm/java/lib/tools.jar
+ continue
+ test -f /usr/lib/jvm/default-java/lib/tools.jar
+ export TOOLS_JAR=/usr/lib/jvm/default-java/lib/tools.jar
+ return
+ exe=
+ test -n linux64
+ test -z
+ get_java_home
+ test -d
+ test -n linux-amd64
+ test -d ./java/linux-amd64
+ + head -n 1
ls -t ./java/linux-amd64
+ echo ./java/linux-amd64/jdk1.6.0_24/jre
+ JAVA_HOME=./java/linux-amd64/jdk1.6.0_24/jre
+ test -z linux64
+ test -f ./java/linux-amd64/jdk1.6.0_24/jre/lib/tools.jar
+ test -f ./java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
+ test -n ./java/linux-amd64/jdk1.6.0_24/jre
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre/jre
+ export PATH=./java/linux-amd64/jdk1.6.0_24/jre/bin:/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/sbin:/sbin:/bin
+ : build fake.jar, making sure javac is in the PATH
+ get_java_home
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre
+ echo ./java/linux-amd64/jdk1.6.0_24/jre
+ get_java_home
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre
+ echo ./java/linux-amd64/jdk1.6.0_24/jre
+ PATH=./java/linux-amd64/jdk1.6.0_24/jre/bin:/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/sbin:/sbin:/bin:./java/linux-amd64/jdk1.6.0_24/jre/bin:./java/linux-amd64/jdk1.6.0_24/jre/../bin ensure_fake_is_built
+ need_to_build_fake
+ cd .
+ test -f jars/fake.jar
+ echo YesPlease
+ return
+ return
+ test -z YesPlease
+ cd .
+ : blow previous builds away
+ rm -rf build/jars/fake/
+ mkdir -p build/jars/fake/
+ : compile classes
+ find src-plugins/fake/ -name *.java
+ java -jar precompiled/javac.jar -source 1.5 -target 1.5 -classpath precompiled/javac.jar -d build/jars/fake/ src-plugins/fake/fiji/build/CompileCProgram.java src-plugins/fake/fiji/build/StreamDumper.java src-plugins/fake/fiji/build/SubFake.java src-plugins/fake/fiji/build/Special.java src-plugins/fake/fiji/build/MultiIterable.java src-plugins/fake/fiji/build/CompileClass.java src-plugins/fake/fiji/build/Fake.java src-plugins/fake/fiji/build/CompileNativeLibrary.java src-plugins/fake/fiji/build/ExecuteProgram.java src-plugins/fake/fiji/build/ByteCodeAnalyzer.java src-plugins/fake/fiji/build/Rule.java src-plugins/fake/fiji/build/MiniMaven.java src-plugins/fake/fiji/build/FakeException.java src-plugins/fake/fiji/build/GlobFilter.java src-plugins/fake/fiji/build/Util.java src-plugins/fake/fiji/build/ObsoleteClassFiles.java src-plugins/fake/fiji/build/Parser.java src-plugins/fake/fiji/build/All.java src-plugins/fake/fiji/build/ParallelMaker.java src-plugins/fake/fiji/build/JarClassLoader.java src-plugins/fake/fiji/build/CopyJar.java src-plugins/fake/fiji/build/CompileJar.java
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
+ : compile .jar using Fiji Build
+ java -classpath build/jars/fake/:precompiled/javac.jar fiji.build.Fake jars/fake.jar-rebuild
Building jars/fake.jar-rebuild <-
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building <- jars/fake.jar-rebuild
+ sh ./bin/ImageJ.sh --build -Dminimaven.updateinterval=1 --
Building jars/javac.jar <- src-plugins/javac/com/sun/tools/javac/t...
src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:271: warning: sun.reflect.annotation.ExceptionProxy is internal proprietary API and may be removed in a future release
private static class MirroredTypeExceptionProxy extends ExceptionProxy {
^
src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:307: warning: sun.reflect.annotation.ExceptionProxy is internal proprietary API and may be removed in a future release
private static class MirroredTypesExceptionProxy extends ExceptionProxy {
^
src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:84: warning: sun.reflect.annotation.AnnotationParser is internal proprietary API and may be removed in a future release
return AnnotationParser.annotationForMap(annoType,
^
src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:164: warning: sun.reflect.annotation.ExceptionProxy is internal proprietary API and may be removed in a future release
if (!(value instanceof ExceptionProxy) &&
^
src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:165: warning: sun.reflect.annotation.AnnotationType is internal proprietary API and may be removed in a future release
!AnnotationType.invocationHandlerReturnType(returnClass)
^
src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:201: warning: sun.reflect.annotation.ExceptionProxy is internal proprietary API and may be removed in a future release
if (value == null || value instanceof ExceptionProxy) {
^
src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:225: warning: sun.reflect.annotation.EnumConstantNotPresentExceptionProxy is internal proprietary API and may be removed in a future release
value = new EnumConstantNotPresentExceptionProxy(
^
src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:252: warning: sun.reflect.annotation.ExceptionProxy is internal proprietary API and may be removed in a future release
value = new ExceptionProxy() {
^
src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:252: warning: sun.reflect.annotation.ExceptionProxy is internal proprietary API and may be removed in a future release
value = new ExceptionProxy() {
^
9 warnings
Building jars/ij.jar <- jars/javac.jar modules/ImageJA/
Building jars/Jama.jar <- src-plugins/Jama/
Compiling 9 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Jama
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Jama/src/main/java/Jama/Matrix.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building jars/mpicbg.jar <- jars/ij.jar jars/Jama.jar modules/mpicbg/
Building jars/imglib.jar <- jars/mpicbg.jar modules/imglib/
Building jars/pal-optimization.jar <- src-plugins/pal-optimization/
Compiling 22 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/pal-optimization
Building jars/jsch.jar <- modules/jsch/
Building plugins/Fiji_Updater.jar <- src-plugins/Fiji_Updater/fiji...
Building ImageJ <- plugins/Fiji_Updater.jar
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 353 100 353 0 0 4270 0 --:--:-- --:--:-- --:--:-- 88250
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 359 100 359 0 0 72393 0 --:--:-- --:--:-- --:--:-- 116k
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 12815 100 12815 0 0 2530k 0 --:--:-- --:--:-- --:--:-- 4171k
Fixing jars/ij-launcher.jar...
Processing 7 file(s) from jars/ij-launcher.jar to jars/ij-launcher.jar.new.
Transformed 3 file(s).
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 29054 100 29054 0 0 4558k 0 --:--:-- --:--:-- --:--:-- 7093k
Building src-plugins/fiji-lib/help-cursor.gif <- images/help-curso...
Building jars/fiji-lib.jar <- src-plugins/fiji-lib/fiji/tool/ToolW...
Note: src-plugins/fiji-lib/fiji/util/gui/JFrameCommandFinder.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building jars/jzlib.jar <-
Building jars/junit.jar <- modules/junit/
Building jars/VIB-lib.jar <- jars/ij.jar jars/Jama.jar jars/junit....
Compiling 190 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB-lib
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building plugins/3D_Viewer.jar <- src-plugins/3D_Viewer/ij3d/Test_...
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building jars/imglib2.jar <- modules/imglib/
Building jars/imglib2.jar <- plugins/Fiji_Updater.jar
Updating the Fiji database (Updating from Fiji site)
Updating the Fiji database 0/1
(process:13834): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
(process:13834): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
Updating from Fiji site done
Done: Updating the Fiji database
Czech Summer (jars/imglib2.jar)
jars/imglib2.jar done
Czech Summer 0/0
Done: Czech Summer
(process:13834): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
Downloading... (jars/imglib2.jar)
Downloading... 158381/400958
jars/imglib2.jar done
Done: Downloading...
Installed jars/imglib2.jar
Building plugins/Arrow_.jar <- src-plugins/Arrow_/plugins.config s...
Building plugins/BalloonSegmentation_.jar <- src-plugins/BalloonSe...
Note: src-plugins/BalloonSegmentation_/BalloonSegmentation_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building plugins/View5D_.jar <- src-plugins/View5D_/view5d/DoubleE...
Note: src-plugins/View5D_/view5d/ImageCanvas.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Building jars/edu_mines_jtk.jar <-
Building jars/imglib-algorithms.jar <- jars/Jama.jar jars/imglib.j...
Building jars/jna.jar <-
Building jars/jython.jar <- modules/jython/
Building plugins/loci_tools.jar <- modules/bio-formats/
Building jars/jacl.jar <- modules/tcljava/
Building jars/batik.jar <- modules/batik/
Building jars/jfreechart.jar <-
Building jars/imglib-ij.jar <- jars/ij.jar jars/imglib.jar jars/mp...
Building jars/imglib-io.jar <- plugins/loci_tools.jar jars/imglib....
Building jars/jcommon.jar <-
Building plugins/TrackMate_.jar <- src-plugins/TrackMate_/fiji/plu...
src-plugins/TrackMate_/fiji/plugin/trackmate/action/ExtractTrackStackAction.java:111: cannot find symbol
symbol : method getC()
location: class ij.ImagePlus
final int targetChannel = settings.imp.getC(); // We do this for current channel
^
1 error
Compile error
at fiji.build.Fake.callJavac(Fake.java:554)
at fiji.build.Fake.compileJavas(Fake.java:637)
at fiji.build.Rule.compileJavas(Rule.java:412)
at fiji.build.CompileJar.action(CompileJar.java:56)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:331)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:265)
at fiji.build.Fake.main(Fake.java:55)
Compile error
in rule plugins/TrackMate_.jar <- src-plugins/TrackMate_/fiji/plu...
in rule all <- ImageJ fiji jars/ij.jar plugins/loci_tools.jar jar...
Build step 'Execute shell' marked build as failure
More information about the ImageJ-builds
mailing list