[ImageJ-builds] Build failed in Jenkins: fiji-windows-full #7

[Jenkins Daemon]

See <https://qa.nest-initiative.org/job/fiji-windows-full/7/changes>

Changes:

[sapristi] Soft-commit TrakEM2: fix potential error in the caching threads.

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Started by remote host 144.92.48.145
Building remotely on windows-7-pro-x86_64
Checkout:fiji-windows-full / <https://qa.nest-initiative.org/job/fiji-windows-full/ws/> - hudson.remoting.Channel at 44426cf9:windows-7-pro-x86_64
Using strategy: Default
Last Built Revision: Revision c7fd5ba80bfce5ea5fb2a0d9faaac4065b7b356f (origin/master)
Fetching changes from 1 remote Git repository
Fetching upstream changes from git://fiji.sc/fiji.git
Commencing build of Revision 9c49c3dbd587c6dab3f3fbfd48304a6869d1ba2a (origin/master)
Checking out Revision 9c49c3dbd587c6dab3f3fbfd48304a6869d1ba2a (origin/master)
Cleaning workspace
[fiji-windows-full] $ sh -xe C:\Users\jenkins\AppData\Local\Temp\hudson8063853307803360031.sh
+ grep 'StrictHostKeyChecking no' /etc/ssh/ssh_config
    StrictHostKeyChecking no
[fiji-windows-full] $ sh -xe C:\Users\jenkins\AppData\Local\Temp\hudson6369542865175721665.sh
+ export PATH=/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin
+ PATH=/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin
+ git submodule init
Submodule 'java/linux' () registered for path 'java/linux'
Submodule 'java/linux-amd64' () registered for path 'java/linux-amd64'
Submodule 'java/macosx-java3d' () registered for path 'java/macosx-java3d'
Submodule 'java/win32' () registered for path 'java/win32'
Submodule 'java/win64' () registered for path 'java/win64'
Submodule 'AutoComplete' () registered for path 'modules/AutoComplete'
Submodule 'ImageJA' () registered for path 'modules/ImageJA'
Submodule 'RSyntaxTextArea' () registered for path 'modules/RSyntaxTextArea'
Submodule 'Retrotranslator' () registered for path 'modules/Retrotranslator'
Submodule 'TrakEM2' () registered for path 'modules/TrakEM2'
Submodule 'batik' () registered for path 'modules/batik'
Submodule 'bio-formats' () registered for path 'modules/bio-formats'
Submodule 'clojure' () registered for path 'modules/clojure'
Submodule 'commons-math' () registered for path 'modules/commons-math'
Submodule 'ij-plugins' () registered for path 'modules/ij-plugins'
Submodule 'modules/imagej5d' () registered for path 'modules/image5d'
Submodule 'modules/imagej2' () registered for path 'modules/imagej2'
Submodule 'imglib' () registered for path 'modules/imglib'
Submodule 'modules/javassist' () registered for path 'modules/javassist'
Submodule 'jsch' () registered for path 'modules/jsch'
Submodule 'junit' () registered for path 'modules/junit'
Submodule 'jython' () registered for path 'modules/jython'
Submodule 'mpicbg' () registered for path 'modules/mpicbg'
Submodule 'tcljava' () registered for path 'modules/tcljava'
Submodule 'weka' () registered for path 'modules/weka'
+ git submodule sync
Synchronizing submodule url for 'java/linux'
Synchronizing submodule url for 'java/linux-amd64'
Synchronizing submodule url for 'java/macosx-java3d'
Synchronizing submodule url for 'java/win32'
Synchronizing submodule url for 'java/win64'
Synchronizing submodule url for 'AutoComplete'
Synchronizing submodule url for 'ImageJA'
Synchronizing submodule url for 'RSyntaxTextArea'
Synchronizing submodule url for 'Retrotranslator'
Synchronizing submodule url for 'TrakEM2'
Synchronizing submodule url for 'batik'
Synchronizing submodule url for 'bio-formats'
Synchronizing submodule url for 'clojure'
Synchronizing submodule url for 'commons-math'
Synchronizing submodule url for 'ij-plugins'
Synchronizing submodule url for 'modules/imagej5d'
Synchronizing submodule url for 'modules/imagej2'
Synchronizing submodule url for 'imglib'
Synchronizing submodule url for 'modules/javassist'
Synchronizing submodule url for 'jsch'
Synchronizing submodule url for 'junit'
Synchronizing submodule url for 'jython'
Synchronizing submodule url for 'mpicbg'
Synchronizing submodule url for 'tcljava'
Synchronizing submodule url for 'weka'
++ git ls-files --stage
++ sed -n 's/^160000 .\{40\} 0.//p'
++ grep -v java/
+ SUBMODULES='modules/AutoComplete
modules/ImageJA
modules/RSyntaxTextArea
modules/Retrotranslator
modules/TrakEM2
modules/batik
modules/bio-formats
modules/clojure
modules/commons-math
modules/ij-plugins
modules/image5d
modules/imagej2
modules/imglib
modules/javassist
modules/jsch
modules/junit
modules/jython
modules/mpicbg
modules/tcljava
modules/weka'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/AutoComplete
Submodule 'AutoComplete' () registered for path 'modules/AutoComplete'
+ cd '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/modules/AutoComplete'>
+ git clean -dfx
Removing ant-classes/
Removing autocomplete.jar
Removing dist/
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/ImageJA
Submodule 'ImageJA' () registered for path 'modules/ImageJA'
+ cd '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/modules/ImageJA'>
+ git clean -dfx
Removing target/
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/RSyntaxTextArea
Submodule 'RSyntaxTextArea' () registered for path 'modules/RSyntaxTextArea'
+ cd '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/modules/RSyntaxTextArea'>
+ git clean -dfx
Removing ant-classes/
Removing dist/
Removing rsyntaxtextarea.jar
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/Retrotranslator
Submodule 'Retrotranslator' () registered for path 'modules/Retrotranslator'
+ cd '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/modules/Retrotranslator'>
+ git clean -dfx
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/TrakEM2
Submodule 'TrakEM2' () registered for path 'modules/TrakEM2'
error: Your local changes to the following files would be overwritten by checkout:
	ini/trakem2/display/Patch.java
	ini/trakem2/utils/CachingThread.java
Please, commit your changes or stash them before you can switch branches.
Aborting
Unable to checkout '1180d3ec6057d5de4a6e00083a24139991180d9b' in submodule path 'modules/TrakEM2'
Build step 'Execute shell' marked build as failure
Failed to send e-mail to sapristi because no e-mail address is known, and no default e-mail domain is configured