[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #754
jenkins at imagej.net
jenkins at imagej.net
Thu Jul 26 17:02:40 CDT 2012
See <http://jenkins.imagej.net/job/Fiji-minimal/754/>
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[...truncated 3062 lines...]
Czechsummer (plugins/TopoJ_.jar)
plugins/TopoJ_.jar done
Czechsummer (plugins/Graph_Cut.jar)
plugins/Graph_Cut.jar done
Czechsummer (plugins/MosaicJ_.jar)
plugins/MosaicJ_.jar done
Czechsummer (plugins/UnwarpJ_.jar)
plugins/UnwarpJ_.jar done
Czechsummer (plugins/SheppLogan_.jar)
plugins/SheppLogan_.jar done
Czechsummer (plugins/Snakuscule_.jar)
plugins/Snakuscule_.jar done
Czechsummer (jars/jna.jar)
jars/jna.jar done
Czechsummer (jars/imglib-scripting.jar)
jars/imglib-scripting.jar done
Czechsummer (plugins/Samples_.jar)
plugins/Samples_.jar done
Czechsummer (jars/mij.jar)
jars/mij.jar done
Czechsummer (plugins/Series_Labeler.jar)
plugins/Series_Labeler.jar done
Czechsummer (jars/imageware.jar)
jars/imageware.jar done
Czechsummer (plugins/Extended_Depth_Field.jar)
plugins/Extended_Depth_Field.jar done
Czechsummer (jars/weave_jy2java.jar)
jars/weave_jy2java.jar done
Czechsummer (plugins/3D_Blob_Segmentation.jar)
plugins/3D_Blob_Segmentation.jar done
Czechsummer (plugins/Lasso_and_Blow_Tool.jar)
plugins/Lasso_and_Blow_Tool.jar done
Czechsummer (plugins/Thread_Killer.jar)
plugins/Thread_Killer.jar done
Czechsummer (plugins/CPU_Meter.jar)
plugins/CPU_Meter.jar done
Czechsummer (plugins/Dichromacy_.jar)
plugins/Dichromacy_.jar done
Czechsummer (jars/imglib2-io.jar)
jars/imglib2-io.jar done
Czechsummer (jars/imglib2-ui.jar)
jars/imglib2-ui.jar done
Czechsummer (Contents/MacOS/fiji-macosx)
Contents/MacOS/fiji-macosx done
Czechsummer (Contents/MacOS/fiji-tiger)
Contents/MacOS/fiji-tiger done
Czechsummer (plugins/Fiji_Package_Maker.jar)
plugins/Fiji_Package_Maker.jar done
Czechsummer (Contents/MacOS/ImageJ-macosx)
Contents/MacOS/ImageJ-macosx done
Czechsummer (Contents/MacOS/ImageJ-tiger)
Contents/MacOS/ImageJ-tiger done
Czechsummer (ImageJ-linux32)
ImageJ-linux32 done
Czechsummer (ImageJ-win32.exe)
ImageJ-win32.exe done
Czechsummer (ImageJ-win64.exe)
ImageJ-win64.exe done
Czechsummer (plugins/BalloonSegmentation_.jar)
plugins/BalloonSegmentation_.jar done
Czechsummer (jars/imglib2-algorithms-gpl.jar)
jars/imglib2-algorithms-gpl.jar done
Czechsummer (jars/imglib2-algorithms.jar)
jars/imglib2-algorithms.jar done
Czechsummer (jars/jgraphx.jar)
jars/jgraphx.jar done
Czechsummer (jars/jdom-contrib.jar)
jars/jdom-contrib.jar done
Czechsummer (jars/jgrapht-jdk1.6.jar)
jars/jgrapht-jdk1.6.jar done
Czechsummer (jars/jdom.jar)
jars/jdom.jar done
Czechsummer (plugins/TrackMate_.jar)
plugins/TrackMate_.jar done
Done: Czechsummer
Could not update due to conflicts:
jars/javac.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/ij.jar
jars/imglib2.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/ij-ui-2.0.0-SNAPSHOT.jar, jars/imglib2-ops-2.0.0-SNAPSHOT.jar, jars/ij-data-2.0.0-SNAPSHOT.jar, plugins/Trainable_Segmentation.jar, jars/imglib2-ij.jar, jars/imglib2-io.jar, jars/imglib2-ui.jar, jars/imglib2-algorithms-gpl.jar, jars/imglib2-algorithms.jar
jars/jruby.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/JRuby_Interpreter.jar
jars/fake.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Refresh_Javas.jar, plugins/Script_Editor.jar
plugins/Image_5D.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/imagescience.jar, plugins/Manual_Tracking.jar
jars/imglib2-ij.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Trainable_Segmentation.jar
jars/rsyntaxtextarea.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Script_Editor.jar, jars/autocomplete.jar
jars/junit.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/edu_mines_jtk.jar, plugins/Colocalisation_Analysis.jar, jars/VIB-lib.jar, plugins/VIB_.jar, plugins/Simple_Neurite_Tracer.jar, jars/jep.jar, plugins/Image_Expression_Parser.jar, jars/jython.jar
jars/jfreechart.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/TrakEM2_.jar, plugins/Directionality_.jar, plugins/Simple_Neurite_Tracer.jar, jars/imglib-scripting.jar, plugins/Script_Editor.jar, plugins/TrackMate_.jar
plugins/3D_Viewer.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/VIB_.jar, plugins/TrakEM2_.jar, plugins/Simple_Neurite_Tracer.jar, plugins/3D_Blob_Segmentation.jar, plugins/TrackMate_.jar
jars/jsch.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Fiji_Plugins.jar
jars/wavelets.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Extended_Depth_Field.jar
jars/imglib.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Colocalisation_Analysis.jar, jars/imglib-ij.jar, jars/imglib-algorithms.jar, jars/VIB-lib.jar, plugins/3D_Viewer.jar, plugins/TrakEM2_.jar, plugins/Stitching_.jar, plugins/Trainable_Segmentation.jar, plugins/Algorithm_Launcher.jar, plugins/Image_Expression_Parser.jar, plugins/Graph_Cut.jar, jars/imglib-scripting.jar, plugins/Script_Editor.jar, plugins/TrackMate_.jar
plugins/CLI_.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Script_Editor.jar
jars/imglib-algorithms.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Colocalisation_Analysis.jar, plugins/Stitching_.jar, plugins/Trainable_Segmentation.jar, plugins/Image_Expression_Parser.jar, jars/imglib-scripting.jar, plugins/TrackMate_.jar
jars/jython.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/fiji-scripting.jar, plugins/Jython_Interpreter.jar
jars/itextpdf.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Colocalisation_Analysis.jar, plugins/TrackMate_.jar
jars/commons-math.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Trainable_Segmentation.jar, plugins/Simple_Neurite_Tracer.jar, plugins/Script_Editor.jar
jars/fiji-compat.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/fiji-scripting.jar, plugins/Refresh_Javas.jar, plugins/Script_Editor.jar
jars/jzlib.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/VIB-lib.jar, plugins/VIB_.jar, jars/jsch.jar
plugins/Clojure_Interpreter.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Script_Editor.jar
plugins/Stitching_.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Trainable_Segmentation.jar
plugins/Javascript_.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Script_Editor.jar
jars/js.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/fiji-scripting.jar, plugins/Javascript_.jar
jars/javassist.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/fiji-compat.jar
jars/imagescience.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/TransformJ_.jar, plugins/Trainable_Segmentation.jar
plugins/Jython_Interpreter.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Script_Editor.jar
jars/Jama.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/mpicbg.jar, jars/imglib.jar, jars/imglib-algorithms.jar, jars/VIB-lib.jar, plugins/3D_Viewer.jar, plugins/VIB_.jar, plugins/TrakEM2_.jar, jars/VectorString.jar, jars/jep.jar, plugins/TopoJ_.jar, plugins/BalloonSegmentation_.jar, plugins/TrackMate_.jar
jars/jcommon.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/jfreechart.jar, plugins/TrakEM2_.jar, plugins/Directionality_.jar, plugins/Simple_Neurite_Tracer.jar, jars/imglib-scripting.jar, plugins/Script_Editor.jar, plugins/TrackMate_.jar
plugins/Script_Editor.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/weave_jy2java.jar
plugins/AnalyzeSkeleton_.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Simple_Neurite_Tracer.jar
jars/ij.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Auto_Threshold.jar, plugins/Bug_Submitter.jar, plugins/Colocalisation_Analysis.jar, jars/imglib.jar, plugins/mpicbg_.jar, jars/mpicbg.jar, jars/imglib-ij.jar, plugins/Color_Histogram.jar, plugins/Color_Inspector_3D.jar, plugins/IJ_Robot.jar, plugins/Interactive_3D_Surface_Plot.jar, plugins/MTrack2_.jar, plugins/M_I_P.jar, plugins/PIV_analyser.jar, plugins/Skeletonize3D_.jar, plugins/SplineDeformationGenerator_.jar, plugins/Statistical_Region_Merging.jar, plugins/Time_Stamper.jar, plugins/Image_5D.jar, jars/imagescience.jar, plugins/TransformJ_.jar, plugins/TurboReg_.jar, plugins/VIB_.jar, jars/VIB-lib.jar, plugins/3D_Viewer.jar, plugins/Video_Editing.jar, plugins/View5D_.jar, plugins/Volume_Viewer.jar, plugins/bUnwarpJ_.jar, plugins/ij-ImageIO_.jar, plugins/level_sets.jar, plugins/loci_tools.jar, plugins/TrakEM2_.jar, plugins/register_virtual_stack_slices.jar, plugins/Manual_Tracking.jar, plugins/3D_Objects_Counter.jar, plugins/Siox_Segmentation.jar, jars/VectorString.jar, plugins/RATS_.jar, plugins/Directionality_.jar, plugins/Trainable_Segmentation.jar, plugins/Fiji_Plugins.jar, plugins/Stitching_.jar, jars/imglib2-ij.jar, plugins/Simple_Neurite_Tracer.jar, plugins/AnalyzeSkeleton_.jar, plugins/Algorithm_Launcher.jar, plugins/Anisotropic_Diffusion_2D.jar, plugins/Image_Expression_Parser.jar, plugins/QuickPALM_.jar, plugins/TopoJ_.jar, plugins/Graph_Cut.jar, plugins/MosaicJ_.jar, plugins/UnwarpJ_.jar, plugins/SheppLogan_.jar, plugins/Snakuscule_.jar, jars/imglib-scripting.jar, jars/mij.jar, plugins/Series_Labeler.jar, jars/imageware.jar, plugins/Extended_Depth_Field.jar, jars/wavelets.jar, jars/weave_jy2java.jar, jars/fiji-scripting.jar, jars/fiji-compat.jar, plugins/Refresh_Javas.jar, plugins/Javascript_.jar, plugins/Jython_Interpreter.jar, plugins/JRuby_Interpreter.jar, plugins/Clojure_Interpreter.jar, plugins/BeanShell_Interpreter.jar, plugins/Script_Editor.jar, plugins/CLI_.jar, plugins/3D_Blob_Segmentation.jar, plugins/Lasso_and_Blow_Tool.jar, plugins/Thread_Killer.jar, plugins/CPU_Meter.jar, plugins/Dichromacy_.jar, plugins/Fiji_Package_Maker.jar, plugins/BalloonSegmentation_.jar, plugins/TrackMate_.jar
plugins/Refresh_Javas.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/weave_jy2java.jar, plugins/Script_Editor.jar
plugins/BeanShell_Interpreter.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Script_Editor.jar
jars/fiji-scripting.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Refresh_Javas.jar, jars/weave_jy2java.jar, plugins/Javascript_.jar, plugins/Jython_Interpreter.jar, plugins/JRuby_Interpreter.jar, plugins/Clojure_Interpreter.jar, plugins/BeanShell_Interpreter.jar, plugins/Script_Editor.jar, plugins/CLI_.jar
jars/imglib-ij.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Colocalisation_Analysis.jar, plugins/TrakEM2_.jar, plugins/Stitching_.jar, plugins/Trainable_Segmentation.jar, plugins/Image_Expression_Parser.jar, plugins/Graph_Cut.jar, jars/imglib-scripting.jar, plugins/Script_Editor.jar, plugins/TrackMate_.jar
jars/clojure.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Clojure_Interpreter.jar
plugins/JRuby_Interpreter.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Script_Editor.jar
jars/VIB-lib.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/VIB_.jar, plugins/3D_Viewer.jar, plugins/TrakEM2_.jar, plugins/Trainable_Segmentation.jar, plugins/Simple_Neurite_Tracer.jar
plugins/Fiji_Plugins.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Stitching_.jar
jars/autocomplete.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
plugins/Script_Editor.jar
jars/pal-optimization.jar: Locally modified and the Updater cannot determine its status. A newer version might be required by
jars/VIB-lib.jar, plugins/VIB_.jar, plugins/Simple_Neurite_Tracer.jar
null: There are files which need to be updated/installed since other files depend on them:
plugins/TrakEM2_.jar, plugins/mpicbg_.jar, jars/mpicbg.jar
Building plugins/Volume_Viewer.jar <- src-plugins/Volume_Viewer/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Volume_Viewer
Building plugins/SplineDeformationGenerator_.jar <- src-plugins/Sp...
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SplineDeformationGenerator_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SplineDeformationGenerator_/src/main/java/SplineDeformationGenerator/SplineDeformationGenerator_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SplineDeformationGenerator_/src/main/java/SplineDeformationGenerator/SplineDeformationGenerator_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building plugins/3D_Blob_Segmentation.jar <- src-plugins/3D_Blob_S...
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Blob_Segmentation
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java:13: package levelsets.ij does not exist
import levelsets.ij.LevelSet;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java:58: cannot find symbol
symbol : class LevelSet
location: class ij3d.segmentation.Blob_Segmentation_in_3D.GrowBlob
private LevelSet levelsets = new LevelSet();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java:58: cannot find symbol
symbol : class LevelSet
location: class ij3d.segmentation.Blob_Segmentation_in_3D.GrowBlob
private LevelSet levelsets = new LevelSet();
^
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
3 errors
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
at fiji.build.minimaven.POM.build(POM.java:223)
at fiji.build.minimaven.POM.buildJar(POM.java:164)
at fiji.build.SubFake.action(SubFake.java:184)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:242)
at fiji.build.Fake.main(Fake.java:56)
Compile error: 1
in rule plugins/3D_Blob_Segmentation.jar <- src-plugins/3D_Blob_S...
in rule all <- ImageJ fiji jars/VectorString.jar jars/ij-app.jar ...
Build step 'Execute shell' marked build as failure
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