[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #686
jenkins at imagej.net
jenkins at imagej.net
Thu Jul 12 17:32:20 CDT 2012
See <http://jenkins.imagej.net/job/Fiji-minimal/686/>
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[...truncated 940 lines...]
* Image Processing, 56(6):462???478, 1994." Based on the ITK version from
^
3 warnings
Building plugins/Manual_Tracking.jar <- src-plugins/Manual_Tracking/
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:2: warning: unmappable character for encoding ASCII
Fabrice P Cordeli??res, fabrice.cordelieres at curie.u-psud.fr
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:2: warning: unmappable character for encoding ASCII
Fabrice P Cordeli??res, fabrice.cordelieres at curie.u-psud.fr
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:187: warning: unmappable character for encoding ASCII
String[] head={"Track n??","Slice n??","X","Y","Distance","Velocity","Pixel Value"}; //2D results table's headings
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:187: warning: unmappable character for encoding ASCII
String[] head={"Track n??","Slice n??","X","Y","Distance","Velocity","Pixel Value"}; //2D results table's headings
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:187: warning: unmappable character for encoding ASCII
String[] head={"Track n??","Slice n??","X","Y","Distance","Velocity","Pixel Value"}; //2D results table's headings
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:187: warning: unmappable character for encoding ASCII
String[] head={"Track n??","Slice n??","X","Y","Distance","Velocity","Pixel Value"}; //2D results table's headings
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:198: warning: unmappable character for encoding ASCII
int Centring; //3D centring option n??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:198: warning: unmappable character for encoding ASCII
int Centring; //3D centring option n??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:206: warning: unmappable character for encoding ASCII
int Quantification; //3D quantification option n??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:206: warning: unmappable character for encoding ASCII
int Quantification; //3D quantification option n??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:265: warning: unmappable character for encoding ASCII
int [][] VRMLarray; //1st dimension: line n?? from the 3D results table; 2nd dimension: 0-Tag (track n??/color); 1-time; 2-x, 3-y; 4-z
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:265: warning: unmappable character for encoding ASCII
int [][] VRMLarray; //1st dimension: line n?? from the 3D results table; 2nd dimension: 0-Tag (track n??/color); 1-time; 2-x, 3-y; 4-z
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:265: warning: unmappable character for encoding ASCII
int [][] VRMLarray; //1st dimension: line n?? from the 3D results table; 2nd dimension: 0-Tag (track n??/color); 1-time; 2-x, 3-y; 4-z
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:265: warning: unmappable character for encoding ASCII
int [][] VRMLarray; //1st dimension: line n?? from the 3D results table; 2nd dimension: 0-Tag (track n??/color); 1-time; 2-x, 3-y; 4-z
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:321: warning: unmappable character for encoding ASCII
butDel = new Button("Delete track n??");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:321: warning: unmappable character for encoding ASCII
butDel = new Button("Delete track n??");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:508: warning: unmappable character for encoding ASCII
choicecalxy.add("??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:508: warning: unmappable character for encoding ASCII
choicecalxy.add("??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:510: warning: unmappable character for encoding ASCII
choicecalxy.select("??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:510: warning: unmappable character for encoding ASCII
choicecalxy.select("??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:735: warning: unmappable character for encoding ASCII
gd = new GenericDialog("Delete Track n??" + tracktodelete);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:735: warning: unmappable character for encoding ASCII
gd = new GenericDialog("Delete Track n??" + tracktodelete);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:736: warning: unmappable character for encoding ASCII
gd.addMessage("Do you want to \n" + "delete track n??" + tracktodelete + " ?");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:736: warning: unmappable character for encoding ASCII
gd.addMessage("Do you want to \n" + "delete track n??" + tracktodelete + " ?");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:772: warning: unmappable character for encoding ASCII
IJ.showStatus("Track n??"+tracktodelete +" Deleted !");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:772: warning: unmappable character for encoding ASCII
IJ.showStatus("Track n??"+tracktodelete +" Deleted !");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:1048: warning: unmappable character for encoding ASCII
String[] head3D={"Track n??","Timepoint ("+choicecalt.getItem(choicecalt.getSelectedIndex())+")","X","Y","Z","Distance","Velocity","Quantif sgl","Nb voxels sgl ("+(sglBoxx*2+1)+"x"+(sglBoxy*2+1)+"x"+(sglBoxz*2+1)+" px)","Quantif bkgd","Nb voxels bkgd ("+(bkgdBoxx*2+1)+"x"+(bkgdBoxy*2+1)+"x"+(bkgdBoxz*2+1)+" px)","Sgl bkgd corr","Sgl bkgd bleach corr","Quantif ttl"};
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java:1048: warning: unmappable character for encoding ASCII
String[] head3D={"Track n??","Timepoint ("+choicecalt.getItem(choicecalt.getSelectedIndex())+")","X","Y","Z","Distance","Velocity","Quantif sgl","Nb voxels sgl ("+(sglBoxx*2+1)+"x"+(sglBoxy*2+1)+"x"+(sglBoxz*2+1)+" px)","Quantif bkgd","Nb voxels bkgd ("+(bkgdBoxx*2+1)+"x"+(bkgdBoxy*2+1)+"x"+(bkgdBoxz*2+1)+" px)","Sgl bkgd corr","Sgl bkgd bleach corr","Quantif ttl"};
^
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
28 warnings
Building plugins/MTrack2_.jar <- src-plugins/MTrack2_/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/MTrack2_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/MTrack2_/src/main/java/MTrack2_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/MTrack2_/src/main/java/MTrack2_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building plugins/Video_Editing.jar <- src-plugins/Video_Editing/
Compiling 10 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Video_Editing
Building plugins/Action_Bar.jar <- src-plugins/Action_Bar/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Action_Bar
Building plugins/registration_3d.jar <- src-plugins/registration_3d/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/registration_3d
Building plugins/Color_Histogram.jar <- src-plugins/Color_Histogram/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Histogram
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Building plugins/Statistical_Region_Merging.jar <- src-plugins/Sta...
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Statistical_Region_Merging
Building plugins/mpicbg_.jar <- jars/ij.jar jars/mpicbg.jar module...
Building plugins/mpicbg_.jar <- plugins/Fiji_Updater.jar jars/ij.j...
Updating the Fiji database (Updating from Fiji site)
Updating the Fiji database 0/1
(process:11379): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
(process:11379): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
Updating from Fiji site done
Done: Updating the Fiji database
Czech Summer (jars/ij.jar)
jars/ij.jar done
Czech Summer 1738280/3061297
Czech Summer (jars/mpicbg.jar)
jars/mpicbg.jar done
Czech Summer (plugins/mpicbg_.jar)
plugins/mpicbg_.jar done
Czech Summer (jars/Jama.jar)
jars/Jama.jar done
Czech Summer (jars/javac.jar)
jars/javac.jar done
Done: Czech Summer
Skipping locally-modified jars/ij.jar
(process:11379): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
Downloading... (jars/mpicbg.jar)
Downloading... 157013/248483
jars/mpicbg.jar done
Done: Downloading...
Installed jars/mpicbg.jar
(process:11379): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
Downloading... (plugins/mpicbg_.jar)
plugins/mpicbg_.jar done
Done: Downloading...
Installed plugins/mpicbg_.jar
Skipping locally-modified jars/Jama.jar
Skipping locally-modified jars/javac.jar
Building plugins/Trainable_Segmentation.jar <- src-plugins/Trainab...
Compiling 37 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Trainable_Segmentation
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Trainable_Segmentation/src/main/java/ai/BalancedRandomTree.java:120: warning: unmappable character for encoding ASCII
/**??class probabilites */
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Trainable_Segmentation/src/main/java/ai/BalancedRandomTree.java:120: warning: unmappable character for encoding ASCII
/**??class probabilites */
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 warnings
Building plugins/QuickPALM_.jar <- src-plugins/QuickPALM_/
Compiling 14 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/QuickPALM_
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Building plugins/Stack_Manipulation.jar <- src-plugins/Stack_Manip...
Compiling 7 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Stack_Manipulation
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Stack_Manipulation/src/main/java/Kalman_Filter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building plugins/ToAST_.jar <- src-plugins/ToAST_/
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/ToAST_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/ToAST_/src/main/java/ToAST25_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/ToAST_/src/main/java/ToAST25_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building plugins/Samples_.jar <- src-plugins/Samples_/
Building plugins/Descriptor_based_registration.jar <- src-plugins/...
Compiling 121 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/3D_Viewer
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 137 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LocalCoordinateSystemPointDescriptor.java:11: package mpicbg.pointdescriptor.fit does not exist
import mpicbg.pointdescriptor.fit.FitResult;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LocalCoordinateSystemPointDescriptor.java:58: cannot find symbol
symbol : class FitResult
location: class mpicbg.pointdescriptor.LocalCoordinateSystemPointDescriptor<P>
public FitResult fitMatches( final ArrayList<PointMatch> matches ) { return null; }
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/SimplePointDescriptor.java:8: package mpicbg.pointdescriptor.fit does not exist
import mpicbg.pointdescriptor.fit.FitResult;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/SimplePointDescriptor.java:25: cannot find symbol
symbol : class FitResult
location: class mpicbg.pointdescriptor.SimplePointDescriptor<P>
public FitResult fitMatches( final ArrayList<PointMatch> matches ) { return null; }
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantModel.java:6: package mpicbg.pointdescriptor.fit does not exist
import mpicbg.pointdescriptor.fit.FitResult;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantModel.java:15: cannot find symbol
symbol: class FitResult
public abstract class TranslationInvariantModel< M extends TranslationInvariantModel< M > > extends AbstractModel< M > implements FitResult
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
6 errors
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
at fiji.build.minimaven.POM.build(POM.java:221)
at fiji.build.minimaven.POM.build(POM.java:175)
at fiji.build.minimaven.POM.buildJar(POM.java:162)
at fiji.build.SubFake.action(SubFake.java:184)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:256)
at fiji.build.Fake.main(Fake.java:56)
Compile error: 1
in rule plugins/Descriptor_based_registration.jar <- src-plugins/...
in rule all <- ImageJ fiji jars/VectorString.jar jars/ij-app.jar ...
Build step 'Execute shell' marked build as failure
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