[ImageJ-builds] Build failed in Jenkins: fiji-windows-core #105

Jenkins Daemon jenkins at qa.nest-initiative.org
Thu Jul 12 11:38:28 CDT 2012


See <https://qa.nest-initiative.org/job/fiji-windows-core/105/changes>

Changes:

[stephan.preibisch] Simplification, removed empty interface

------------------------------------------
[...truncated 692 lines...]
luts/6_shades.lut done
Czech Summer (luts/blue_orange_icb.lut) 
luts/blue_orange_icb.lut done
Czech Summer (luts/brgbcmyw.lut) 
luts/brgbcmyw.lut done
Czech Summer (luts/cool.lut) 
luts/cool.lut done
Czech Summer (luts/Cyan Hot.lut) 
luts/Cyan Hot.lut done
Czech Summer (luts/edges.lut) 
luts/edges.lut done
Czech Summer (luts/gem.lut) 
luts/gem.lut done
Czech Summer (luts/glasbey.lut) 
luts/glasbey.lut done
Czech Summer (luts/Green Fire Blue.lut) 
luts/Green Fire Blue.lut done
Czech Summer (luts/HiLo.lut) 
luts/HiLo.lut done
Czech Summer (luts/ICA.lut) 
luts/ICA.lut done
Czech Summer (luts/ICA2.lut) 
luts/ICA2.lut done
Czech Summer (luts/ICA3.lut) 
luts/ICA3.lut done
Czech Summer (luts/Magenta Hot.lut) 
luts/Magenta Hot.lut done
Czech Summer (luts/Orange Hot.lut) 
luts/Orange Hot.lut done
Czech Summer (luts/phase.lut) 
luts/phase.lut done
Czech Summer (luts/physics.lut) 
luts/physics.lut done
Czech Summer (luts/Rainbow RGB.lut) 
luts/Rainbow RGB.lut done
Czech Summer (luts/Red Hot.lut) 
luts/Red Hot.lut done
Czech Summer (luts/royal.lut) 
luts/royal.lut done
Czech Summer (luts/sepia.lut) 
luts/sepia.lut done
Czech Summer (luts/smart.lut) 
luts/smart.lut done
Czech Summer (luts/thal.lut) 
luts/thal.lut done
Czech Summer (luts/thallium.lut) 
luts/thallium.lut done
Czech Summer (luts/Thermal.lut) 
luts/Thermal.lut done
Czech Summer (luts/unionjack.lut) 
luts/unionjack.lut done
Czech Summer (luts/Yellow Hot.lut) 
luts/Yellow Hot.lut done
Czech Summer (images/fiji-logo-1.0-128x128.png) 
images/fiji-logo-1.0-128x128.png done
Czech Summer (images/fiji-logo-1.0-256x256.png) 
images/fiji-logo-1.0-256x256.png done
Czech Summer (images/function.png) 
images/function.png done
Czech Summer (images/icon-flat.png) 
images/icon-flat.png done
Czech Summer (images/icon.png) 
images/icon.png done
Czech Summer (images/var.png) 
images/var.png done
Done: Czech Summer

Checking prerequisites of (fiji.build.SubFake) plugins/Image_5D.jar <- modules/imag...
Checking prerequisites of (fiji.build.SubFake) plugins/TrackMate_.jar <- src-plugin...
Building (fiji.build.SubFake) plugins/TrackMate_.jar <- src-plugin...
Parsing src-plugins\TrackMate_\pom.xml
Parsing C:\Users\jenkins\.m2\repository\batik\batik\1.8\batik-1.8.pom
Parsing C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.pom
Parsing C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120710.205225-138.pom
Parsing C:\Users\jenkins\.m2\repository\loci\pom-scifio\4.4-SNAPSHOT\pom-scifio-4.4-20120628.152121-51.pom
Parsing C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.pom
Parsing C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-parent\1.5.10\slf4j-parent-1.5.10.pom
Parsing C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.pom
Parsing C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-log4j12\1.5.10\slf4j-log4j12-1.5.10.pom
Parsing C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120710.205253-138.pom
Parsing C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120710.205311-95.pom
Parsing C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.pom
Parsing C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.pom
Parsing C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.pom
Parsing C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.pom
Parsing C:\Users\jenkins\.m2\repository\xalan\serializer\2.7.1\serializer-2.7.1.pom
Parsing C:\Users\jenkins\.m2\repository\org\apache\apache\4\apache-4.pom
Parsing C:\Users\jenkins\.m2\repository\xml-apis\xml-apis\1.3.04\xml-apis-1.3.04.pom
Parsing C:\Users\jenkins\.m2\repository\xalan\xalan\2.7.1\xalan-2.7.1.pom
Parsing C:\Users\jenkins\.m2\repository\com\itextpdf\itextpdf\5.1.1\itextpdf-5.1.1.pom
Parsing C:\Users\jenkins\.m2\repository\com\itextpdf\itext-parent\1.0.0\itext-parent-1.0.0.pom
Parsing C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.15\jcommon-1.0.15.pom
Parsing C:\Users\jenkins\.m2\repository\org\jdom\jdom-contrib\1.1.3\jdom-contrib-1.1.3.pom
Parsing C:\Users\jenkins\.m2\repository\org\jdom\jdom\1.1.3\jdom-1.1.3.pom
Parsing C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.pom
Parsing C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.pom
Parsing C:\Users\jenkins\.m2\repository\org\sonatype\oss\oss-parent\7\oss-parent-7.pom
Parsing C:\Users\jenkins\.m2\repository\jgrapht\jgrapht-jdk1.6\0.8.1\jgrapht-jdk1.6-0.8.1.pom
Parsing C:\Users\jenkins\.m2\repository\jgraph\jgraphx\1.10.0.3\jgraphx-1.10.0.3.pom
Compiling 185 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\classes;C:\Users\jenkins\.m2\repository\batik\batik\1.8\batik-1.8.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\classes;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\com\itextpdf\itextpdf\5.1.1\itextpdf-5.1.1.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.15\jcommon-1.0.15.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\org\jdom\jdom\1.1.3\jdom-1.1.3.jar;C:\Users\jenkins\.m2\repository\org\jdom\jdom-contrib\1.1.3\jdom-contrib-1.1.3.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\jgrapht\jgrapht-jdk1.6\0.8.1\jgrapht-jdk1.6-0.8.1.jar;C:\Users\jenkins\.m2\repository\jgraph\jgraphx\1.10.0.3\jgraphx-1.10.0.3.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120710.205225-138.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120710.205253-138.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\classes;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120710.205311-95.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\AbstractTMAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\CaptureOverlayAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\CopyOverlayAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\ExportTracksToXML.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\ExtractTrackStackAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\GrabSpotImageAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\ISBIChallengeExporter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\LinkNew3DViewerAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\PlotNSpotsVsTimeAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\RadiusToEstimatedAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\RecalculateFeatureAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\ResetRadiusAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\ResetSpotTimeFeatureAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\TrackMateAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\Dimension.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\FeatureFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\FeatureAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\FeatureModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\AbstractSpotFeatureAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\BlobContrast.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\BlobContrastAndSNR.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\BlobDescriptiveStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\BlobMorphology.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\IndependentSpotFeatureAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\RadiusEstimator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\SpotFeatureAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\SpotIconGrabber.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\track\TrackBranchingAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\track\TrackDurationAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\track\TrackFeatureAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\track\TrackSpeedStatisticsAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\ActionChooserPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\ActionListenablePanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\BasicSegmenterConfigurationPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\DisplayerChoiceDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\DisplayerPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\FilterGuiPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\FilterPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\GuiReader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\GuiSaver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\ImagePlusChooser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\InitFilterPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JNumericTextField.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JPanelColorByFeatureGUI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JPanelFeaturePenalty.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JPanelFeatureSelectionGui.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JPanelTrackerSettingsMain.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LAPTrackerSettingsPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LaunchDisplayerDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\ListChooserPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LoadDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LogPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LogSegmenterConfigurationPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\NearestNeighborTrackerSettingsPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SaveDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SegmentationDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SegmenterChoiceDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SegmenterConfigurationPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SegmenterConfigurationPanelDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SimpleLAPTrackerSettingsPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SomeDialogDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SpotFilterDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\StartDialogPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackerChoiceDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackerConfigurationPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackerConfigurationPanelDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackFilterDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackingDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackMateWizard.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\WizardController.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\WizardPanelDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\InfoTextable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\io\TmXmlKeys.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\io\TmXmlReader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\io\TmXmlWriter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\Logger.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\AbstractSpotSegmenter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\BasicSegmenterSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\DogSegmenter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\DownSampleLogSegmenter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\DownSampleLogSegmenterConfigurationPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\DownSampleLogSegmenterSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\LogSegmenter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\LogSegmenterSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\ManualSegmenter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\SegmenterSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\SpotSegmenter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\Settings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\Spot.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\SpotCollection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\SpotImp.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\ClassNames_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\ConcurrentSpotTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\DogSegmenterTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\GUIReader_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\HangingTracking_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\HyperStackDisplayerTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\JPanelTrackerSettings_Test.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\LAPTrackerTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\LogSegmenterTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\MultiThread_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\NNTrackerTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\PeakPickerSegmenterTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\RadiusEstimator_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\SingleFrame_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\SpotDisplayer3DTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\SpotFeatureGrapher_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\SpotGroupNodeTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\TmXmlReaderTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\TrackMateModel_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\TrackMate_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\TrackVisualizerTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\CostFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\GapClosingCostFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\LinkingCostFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\MergingCostFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\SplittingCostFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\CostMatrixCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\LAPTrackerCostMatrixCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\LinkingCostMatrixCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\TrackSegmentCostMatrixCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\FastLAPTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\AssignmentAlgorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\AssignmentProblem.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\HungarianAlgorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\MunkresKuhnAlgorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\kdtree\NearestNeighborTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\kdtree\NearestNeighborTrackerSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\kdtree\SpotNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\LAPTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\LAPTrackerSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\LAPUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\SimpleFastLAPTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\SimpleLAPTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\SpotTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\TrackerSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateModelChangeEvent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateModelChangeListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateSelectionChangeEvent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateSelectionChangeListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMate_.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\util\DefaultFileFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\util\TMUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\util\TrackSplitter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\AbstractTrackMateModelView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\HyperStackDisplayer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\SpotEditTool.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\SpotOverlay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\TrackOverlay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\threedviewer\SpotDisplayer3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\threedviewer\SpotGroupNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\threedviewer\TrackDisplayNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\TrackMateModelView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\TrackMateSelectionView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\FeaturePlotSelectionPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\InfoPane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\JGraphXAdapter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxScaledLabelShape.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxSideTextShape.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxTrackGraphComponent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxTrackGraphLayout.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxTrackSchemeSvgCanvas.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\SaveAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\SpotFeatureGrapher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\SpotImageUpdater.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\TrackSchemeFrame.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\TrackSchemePopupMenu.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\TrackSchemeToolbar.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\XYEdgeRenderer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\XYEdgeSeries.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\XYEdgeSeriesCollection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\algorithm\gauss\DifferenceOfGaussianRealNI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\algorithm\laplace\LoGKernelFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\AbstractSpecialCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\CoordsCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\DiscCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\DomainCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\SphereCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\Utils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\chart\annotations\XYTextSimpleAnnotation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\chart\ExportableChartPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\chart\renderer\InterpolatePaintScale.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\chart\util\ChartExporter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\data\statistics\LogHistogramDataset.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\classes;C:\Users\jenkins\.m2\repository\batik\batik\1.8\batik-1.8.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\classes;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\com\itextpdf\itextpdf\5.1.1\itextpdf-5.1.1.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.15\jcommon-1.0.15.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\org\jdom\jdom\1.1.3\jdom-1.1.3.jar;C:\Users\jenkins\.m2\repository\org\jdom\jdom-contrib\1.1.3\jdom-contrib-1.1.3.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\jgrapht\jgrapht-jdk1.6\0.8.1\jgrapht-jdk1.6-0.8.1.jar;C:\Users\jenkins\.m2\repository\jgraph\jgraphx\1.10.0.3\jgraphx-1.10.0.3.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120710.205225-138.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120710.205253-138.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\classes;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120710.205311-95.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar
Checking prerequisites of (fiji.build.SubFake) plugins/Differentials_.jar <- src-pl...
Building (fiji.build.SubFake) plugins/Differentials_.jar <- src-pl...
Parsing src-plugins\Differentials_\pom.xml
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\src\main\java\Differentials_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/Sync_Win.jar <- src-plugins/...
Building (fiji.build.SubFake) plugins/Sync_Win.jar <- src-plugins/...
Parsing src-plugins\Sync_Win\pom.xml
Compiling 12 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\DisplayChangeEvent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\DisplayChangeListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\IJEventMulticaster.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\IntField.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\IntSlider.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\OpenImage5DAdapter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\OpenImage5DWindow.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\OpenStackAdapter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\OpenStackWindow.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\Sync_Measure_3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\Sync_Windows.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\TextFieldFocus.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\Sync_Windows.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/FeatureJ_.jar <- src-plugins...
Building (fiji.build.SubFake) plugins/FeatureJ_.jar <- src-plugins...
Parsing src-plugins\FeatureJ_\pom.xml
Compiling 11 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\target\classes;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_About.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Derivatives.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Edges.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Hessian.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Laplacian.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Options.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Panel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Statistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Structure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Website.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\target\classes;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/Thread_Killer.jar <- src-plu...
Building (fiji.build.SubFake) plugins/Thread_Killer.jar <- src-plu...
Parsing src-plugins\Thread_Killer\pom.xml
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer\src\main\java\Thread_Killer.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer\src\main\java\Thread_Killer.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Checking prerequisites of (fiji.build.SubFake) plugins/Directionality_.jar <- src-p...
Building (fiji.build.SubFake) plugins/Directionality_.jar <- src-p...
Parsing src-plugins\Directionality_\pom.xml
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.15\jcommon-1.0.15.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\src\main\java\fiji\analyze\directionality\Directionality_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.15\jcommon-1.0.15.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/LSM_Reader.jar <- src-plugin...
Building (fiji.build.SubFake) plugins/LSM_Reader.jar <- src-plugin...
Parsing src-plugins\LSM_Reader\pom.xml
Compiling 6 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\LSM_Reader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\org\imagearchive\lsm\reader\info\ChannelNamesAndColors.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\org\imagearchive\lsm\reader\info\CZLSMInfo.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\org\imagearchive\lsm\reader\info\ImageDirectory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\org\imagearchive\lsm\reader\info\LSMFileInfo.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\org\imagearchive\lsm\reader\Reader.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\org\imagearchive\lsm\reader\Reader.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/Bug_Submitter.jar <- src-plu...
Building (fiji.build.SubFake) plugins/Bug_Submitter.jar <- src-plu...
Parsing src-plugins\Bug_Submitter\pom.xml
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\target\classes;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\src\main\java\Bug_Submitter\Bug_Submitter.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\target\classes;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\src\main\java\Bug_Submitter\Bug_Submitter.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Checking prerequisites of (fiji.build.SubFake) plugins/MosaicJ_.jar <- src-plugins/...
Building (fiji.build.SubFake) plugins/MosaicJ_.jar <- src-plugins/...
Parsing src-plugins\MosaicJ_\pom.xml
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\MosaicJ_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\MosaicJ_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\MosaicJ_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\MosaicJ_\src\main\java\MosaicJ_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\MosaicJ_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\MosaicJ_\src\main\java\MosaicJ_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/SPIM_Registration.jar <- src...
Building (fiji.build.SubFake) plugins/SPIM_Registration.jar <- src...
Parsing src-plugins\SPIM_Registration\pom.xml
Parsing C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.pom
Parsing C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.pom
Parsing C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.pom
Parsing C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.pom
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at java.net.URL.openStream(URL.java:1010)
	at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:399)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:296)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:254)
	at fiji.build.minimaven.POM.download(POM.java:105)
	at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:626)
	at fiji.build.minimaven.POM.getDependencies(POM.java:405)
	at fiji.build.minimaven.POM.getDependencies(POM.java:380)
	at fiji.build.minimaven.POM.downloadDependencies(POM.java:93)
	at fiji.build.SubFake.action(SubFake.java:183)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:256)
	at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of scifio
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/scifio-4.4-20120712.163320-96.pom.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/scifio-4.4-20120712.163320-96.pom
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/scifio-4.4-20120712.163320-96.jar.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/scifio-4.4-20120712.163320-96.jar
Downloading scifio
Compiling 16 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\classes;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Check_Directories.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Combine_SPIM_Projects.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Count_Files.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\DoubleSlider.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MaximumProjector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MinimumProjector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\OpenerGenericDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Projector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Rename.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMExperiment.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMRegularStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMVirtualStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIM_Opener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\XMLReader.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\classes;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 137 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\classes;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\classes;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.15\jcommon-1.0.15.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120710.205225-138.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120710.205253-138.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\classes;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120710.205311-95.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Apply_External_Transformation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Bead_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Multi_View_Deconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Multi_View_Fusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Regtest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\FileOpenMenuEntry.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\GraphFrame.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\MouseListenerTimelapse.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\RegistrationStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\TimeLapseDisplay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\ICP.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\PointMatchIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\SimplePointMatchIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\AbstractPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\exception\NoSuitablePointsException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LinkedPoint.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LocalCoordinateSystemPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Matcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorSubsetMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Quaternion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SimpleMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SubsetMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\FixedModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\RigidModelOld3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantAffineModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantFixedModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantSimilarityModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\ModelPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\LinearDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\ManhattanDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SimilarityMeasure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SquareDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\SimplePointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\PointNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\TestPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\VirtualPointNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\ClusterReconstruction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\Blending.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimple.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimpleFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightenerFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\Entropy.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\EntropyFloatArray3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFast.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFastFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\FusionControl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContentFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightenerFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalell.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalellMaxWeight.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequential.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequentialDifferentOutput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\PreDeconvolutionFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\SPIMImageFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserGeneral.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ImgLibSaver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\IOFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ParsePattern.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ProgramConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\SPIMConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\TextFileAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\XMLFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\Java3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\PointMatchGeneric.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\SketchTikZFileObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationPhaseCorrelation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\ExtractPSF.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonFFT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonMultiViewDeconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\preprocessing\AutomaticAngleSetup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\Reconstruction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\Bead.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatisticsImpl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorPairWise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\DoGMaximum.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\LaPlaceFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\RejectStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\AbstractDetection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystem3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystemSecure3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CorrespondenceExtraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\ModelBased3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\SparseCorrespondenceExtraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\Detection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleiConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\Nucleus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ComponentProperties.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ConnectedComponent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewDataBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\segmentation\InteractiveDoG.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\simulation\SimulateBeadImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\FastMatrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\FastMatrixN.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\JacobiDouble.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Line.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Plane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Point3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Triangle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\BeadTransformGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Motion3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\PreviewRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Viewer3dFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationSketchTikZ.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizeBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\util\TransformUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\MultiChannel_SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIMRegistrationAbstract.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration_File.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\classes;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\classes;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.15\jcommon-1.0.15.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120710.205225-138.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120710.205253-138.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\classes;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120710.205311-95.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LocalCoordinateSystemPointDescriptor.java:11: package mpicbg.pointdescriptor.fit does not exist
import mpicbg.pointdescriptor.fit.FitResult;
                                 ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LocalCoordinateSystemPointDescriptor.java:58: cannot find symbol
symbol  : class FitResult
location: class mpicbg.pointdescriptor.LocalCoordinateSystemPointDescriptor<P>
	public FitResult fitMatches( final ArrayList<PointMatch> matches )  { return null; }
	       ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantModel.java:6: package mpicbg.pointdescriptor.fit does not exist
import mpicbg.pointdescriptor.fit.FitResult;
                                 ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantModel.java:15: cannot find symbol
symbol: class FitResult
public abstract class TranslationInvariantModel< M extends TranslationInvariantModel< M > > extends AbstractModel< M > implements FitResult
                                                                                                                                  ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\SimplePointDescriptor.java:8: package mpicbg.pointdescriptor.fit does not exist
import mpicbg.pointdescriptor.fit.FitResult;
                                 ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\SimplePointDescriptor.java:25: cannot find symbol
symbol  : class FitResult
location: class mpicbg.pointdescriptor.SimplePointDescriptor<P>
	public FitResult fitMatches( final ArrayList<PointMatch> matches ) { return null; }
	       ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
6 errors
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
	at fiji.build.minimaven.POM.build(POM.java:221)
	at fiji.build.minimaven.POM.buildJar(POM.java:162)
	at fiji.build.SubFake.action(SubFake.java:184)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:256)
	at fiji.build.Fake.main(Fake.java:56)
Compile error: 1
	in rule (fiji.build.SubFake) plugins/SPIM_Registration.jar <- src...
	in rule (fiji.build.All) all <- ImageJ fiji jars/VectorString.jar...
Build step 'Execute shell' marked build as failure



More information about the ImageJ-builds mailing list