[ImageJ-builds] Build failed in Jenkins: fiji-full #425
Jenkins Daemon
jenkins at qa.nest-initiative.org
Thu Jul 12 11:37:35 CDT 2012
See <https://qa.nest-initiative.org/job/fiji-full/425/changes>
Changes:
[stephan.preibisch] Simplification, removed empty interface
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* Askel�f (Ericsson Radio Systems AB); and Bertrand Berthelot, David
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* Askel�f (Ericsson Radio Systems AB); and Bertrand Berthelot, David
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* Askel�f (Ericsson Radio Systems AB); and Bertrand Berthelot, David
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* Bouchard, F�lix Henry, Gerard Mozelle and Patrice Onno (Canon Research
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* Askel�f (Ericsson Radio Systems AB); and Bertrand Berthelot, David
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* Bouchard, F�lix Henry, Gerard Mozelle and Patrice Onno (Canon Research
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<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/src/jj2000/j2k/util/StreamMsgLogger.java>:17: warning: unmappable character for encoding UTF8
* Askel�f (Ericsson Radio Systems AB); and Bertrand Berthelot, David
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* Bouchard, F�lix Henry, Gerard Mozelle and Patrice Onno (Canon Research
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<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/src/jj2000/j2k/util/MathUtil.java>:15: warning: unmappable character for encoding UTF8
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* Askel�f (Ericsson Radio Systems AB); and Bertrand Berthelot, David
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* Bouchard, F�lix Henry, Gerard Mozelle and Patrice Onno (Canon Research
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Compiling 196 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/scifio>
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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/scifio/target/classes>:/home/jenkins/.m2/repository/backport-util-concurrent/backport-util-concurrent/3.1/backport-util-concurrent-3.1.jar:/home/jenkins/.m2/repository/com/sun/clibwrapper_jiio/1.1/clibwrapper_jiio-1.1.jar:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/common/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/stubs/lwf-stubs/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/ome-xml/target/classes>:/home/jenkins/.m2/repository/net/sf/retrotranslator/retrotranslator-runtime/1.2.9/retrotranslator-runtime-1.2.9.jar:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/scifio/src/loci/formats/itk/ITKBridgeJNI.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 127 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/bio-formats>
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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/bio-formats/target/classes>:/home/jenkins/.m2/repository/backport-util-concurrent/backport-util-concurrent/3.1/backport-util-concurrent-3.1.jar:/home/jenkins/.m2/repository/com/sun/clibwrapper_jiio/1.1/clibwrapper_jiio-1.1.jar:/home/jenkins/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/common/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/stubs/lwf-stubs/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/mdbtools/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/metakit/target/classes>:/home/jenkins/.m2/repository/essi-unidata/netcdf-java/4.0.41/netcdf-java-4.0.41.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/ome-xml/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/poi/target/classes>:/home/jenkins/.m2/repository/net/sf/retrotranslator/retrotranslator-runtime/1.2.9/retrotranslator-runtime-1.2.9.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/scifio/target/classes>:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/bio-formats/src/loci/formats/in/TrestleReader.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 87 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms>
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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/classes>:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.jar
Compiling 21 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij>
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Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/io>
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Compiling 137 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration>
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<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/DoGMaximum.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/LaPlaceFunctions.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/RejectStatistics.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/Bead.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadSegmentation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadStructure.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/GlobalErrorStatistics.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/ViewErrorPairWise.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/ViewErrorStatistics.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/GlobalErrorStatisticsImpl.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadIdentification.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/PointMatchIdentification.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/ICP.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/SimplePointMatchIdentification.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/SPIMRegistrationAbstract.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/SPIM_Registration.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/MultiChannel_SPIM_Registration.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/classes>:/home/jenkins/.m2/repository/backport-util-concurrent/backport-util-concurrent/3.1/backport-util-concurrent-3.1.jar:/home/jenkins/.m2/repository/com/sun/clibwrapper_jiio/1.1/clibwrapper_jiio-1.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/io/target/classes>:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/target/classes>:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar:/home/jenkins/.m2/repository/jfree/jcommon/1.0.15/jcommon-1.0.15.jar:/home/jenkins/.m2/repository/jfree/jcommon/1.0.16/jcommon-1.0.16.jar:/home/jenkins/.m2/repository/jfree/jfreechart/1.0.13/jfreechart-1.0.13.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/home/jenkins/.m2/repository/junit/junit/4.5/junit-4.5.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/common/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/stubs/lwf-stubs/target/classes>:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/ome-xml/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes>:/home/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.jar:/home/jenkins/.m2/repository/net/sf/retrotranslator/retrotranslator-runtime/1.2.9/retrotranslator-runtime-1.2.9.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/scifio/target/classes>:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/home/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.jar
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantModel.java>:6: package mpicbg.pointdescriptor.fit does not exist
import mpicbg.pointdescriptor.fit.FitResult;
^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantModel.java>:15: cannot find symbol
symbol: class FitResult
public abstract class TranslationInvariantModel< M extends TranslationInvariantModel< M > > extends AbstractModel< M > implements FitResult
^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/SimplePointDescriptor.java>:8: package mpicbg.pointdescriptor.fit does not exist
import mpicbg.pointdescriptor.fit.FitResult;
^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/SimplePointDescriptor.java>:25: cannot find symbol
symbol : class FitResult
location: class mpicbg.pointdescriptor.SimplePointDescriptor<P>
public FitResult fitMatches( final ArrayList<PointMatch> matches ) { return null; }
^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LocalCoordinateSystemPointDescriptor.java>:11: package mpicbg.pointdescriptor.fit does not exist
import mpicbg.pointdescriptor.fit.FitResult;
^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LocalCoordinateSystemPointDescriptor.java>:58: cannot find symbol
symbol : class FitResult
location: class mpicbg.pointdescriptor.LocalCoordinateSystemPointDescriptor<P>
public FitResult fitMatches( final ArrayList<PointMatch> matches ) { return null; }
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
6 errors
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
at fiji.build.minimaven.POM.build(POM.java:221)
at fiji.build.minimaven.POM.build(POM.java:175)
at fiji.build.minimaven.POM.buildJar(POM.java:162)
at fiji.build.SubFake.action(SubFake.java:184)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:256)
at fiji.build.Fake.main(Fake.java:56)
Compile error: 1
in rule (fiji.build.SubFake) plugins/Descriptor_based_registratio...
in rule (fiji.build.All) all <- ImageJ fiji jars/VectorString.jar...
Build step 'Execute shell' marked build as failure
Archiving artifacts
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