[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #678
jenkins at imagej.net
jenkins at imagej.net
Thu Jul 12 11:37:09 CDT 2012
See <http://jenkins.imagej.net/job/Fiji-minimal/678/>
------------------------------------------
[...truncated 629 lines...]
2 warnings
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/register_virtual_stack_slices
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building jars/VectorString.jar <- jars/ij.jar jars/Jama.jar java/l...
Building jars/VectorString.jar <- plugins/Fiji_Updater.jar jars/ij...
Updating the Fiji database (Updating from Fiji site)
Updating the Fiji database 0/1
(process:23853): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
(process:23853): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
Updating from Fiji site done
Done: Updating the Fiji database
Czech Summer (jars/Jama.jar)
jars/Jama.jar done
Czech Summer 33050/2837562
Czech Summer (jars/ij.jar)
jars/ij.jar done
Czech Summer (jars/javac.jar)
jars/javac.jar done
Czech Summer (jars/VectorString.jar)
jars/VectorString.jar done
Done: Czech Summer
Skipping locally-modified jars/Jama.jar
Skipping locally-modified jars/ij.jar
Skipping locally-modified jars/javac.jar
(process:23853): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
Downloading... (jars/VectorString.jar)
jars/VectorString.jar done
Done: Downloading...
Installed jars/VectorString.jar
Building plugins/Time_Stamper.jar <- src-plugins/Time_Stamper/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Time_Stamper
Building plugins/CorrectBleach_.jar <- src-plugins/CorrectBleach_/
Compiling 8 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java:8: warning: unmappable character for encoding ASCII
* Copyright ?? 2010 Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java:8: warning: unmappable character for encoding ASCII
* Copyright ?? 2010 Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java:13: warning: unmappable character for encoding ASCII
* Copyright ?? 2004, 2005, 2010 Jens Rietdorf, Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java:13: warning: unmappable character for encoding ASCII
* Copyright ?? 2004, 2005, 2010 Jens Rietdorf, Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java:15: warning: unmappable character for encoding ASCII
* Copyright ?? 2010 Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java:15: warning: unmappable character for encoding ASCII
* Copyright ?? 2010 Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java:22: warning: unmappable character for encoding ASCII
* Copyright ?? 2010 Kota Miura
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java:22: warning: unmappable character for encoding ASCII
* Copyright ?? 2010 Kota Miura
^
8 warnings
Building plugins/Stack_Manipulation.jar <- src-plugins/Stack_Manip...
Compiling 7 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Stack_Manipulation
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Stack_Manipulation/src/main/java/Kalman_Filter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building plugins/Directionality_.jar <- src-plugins/Directionality_/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:57: warning: unmappable character for encoding ASCII
* Angles are reported in their common mathematical sense. That is: 0?? is the
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:57: warning: unmappable character for encoding ASCII
* Angles are reported in their common mathematical sense. That is: 0?? is the
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:66: warning: unmappable character for encoding ASCII
* periodic nature of the histogram. The 'Direction (??)' column reports the
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:66: warning: unmappable character for encoding ASCII
* periodic nature of the histogram. The 'Direction (??)' column reports the
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:67: warning: unmappable character for encoding ASCII
* center of the gaussian. The 'Dispersion (??)' column reports the standard
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:67: warning: unmappable character for encoding ASCII
* center of the gaussian. The 'Dispersion (??)' column reports the standard
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:86: warning: unmappable character for encoding ASCII
* +90?? orientation in the Fourier transform of the image, compared to the
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:86: warning: unmappable character for encoding ASCII
* +90?? orientation in the Fourier transform of the image, compared to the
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:534: warning: unmappable character for encoding ASCII
table.addValue("Direction (??)", wrapped_bins[index]);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:534: warning: unmappable character for encoding ASCII
table.addValue("Direction (??)", wrapped_bins[index]);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:545: warning: unmappable character for encoding ASCII
table.addValue("Direction (??)", wrapped_bins[index]);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:545: warning: unmappable character for encoding ASCII
table.addValue("Direction (??)", wrapped_bins[index]);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:671: warning: unmappable character for encoding ASCII
"Direction (??)",
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:671: warning: unmappable character for encoding ASCII
"Direction (??)",
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:831: warning: unmappable character for encoding ASCII
"Direction (??)",
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:831: warning: unmappable character for encoding ASCII
"Direction (??)",
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:832: warning: unmappable character for encoding ASCII
"Dispersion (??)",
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:832: warning: unmappable character for encoding ASCII
"Dispersion (??)",
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1062: warning: unmappable character for encoding ASCII
gd.addNumericField("Histogram start", setting_bin_start , 0, 4, "??");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1062: warning: unmappable character for encoding ASCII
gd.addNumericField("Histogram start", setting_bin_start , 0, 4, "??");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1175: warning: unmappable character for encoding ASCII
-2f, -1f, 0f, 1f, 2f } ; // That's gx, but we want to have a 90?? shift, to comply to the rest of the plugin
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1175: warning: unmappable character for encoding ASCII
-2f, -1f, 0f, 1f, 2f } ; // That's gx, but we want to have a 90?? shift, to comply to the rest of the plugin
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1203: warning: unmappable character for encoding ASCII
pixels_theta[i] = (float) (angle * 180.0 / Math.PI); // deg, -90?? to 90??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1203: warning: unmappable character for encoding ASCII
pixels_theta[i] = (float) (angle * 180.0 / Math.PI); // deg, -90?? to 90??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1203: warning: unmappable character for encoding ASCII
pixels_theta[i] = (float) (angle * 180.0 / Math.PI); // deg, -90?? to 90??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1203: warning: unmappable character for encoding ASCII
pixels_theta[i] = (float) (angle * 180.0 / Math.PI); // deg, -90?? to 90??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1581: warning: unmappable character for encoding ASCII
IJ.showStatus( String.format("Orientation: %5.1f ?? - Amont: %5.1f %%", angle, 100*amount));
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1581: warning: unmappable character for encoding ASCII
IJ.showStatus( String.format("Orientation: %5.1f ?? - Amont: %5.1f %%", angle, 100*amount));
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1764: warning: unmappable character for encoding ASCII
Line line_30deg = new Line(10.0, 412.0, 446.4102, 112.0); // 400px long line, 30??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1764: warning: unmappable character for encoding ASCII
Line line_30deg = new Line(10.0, 412.0, 446.4102, 112.0); // 400px long line, 30??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1765: warning: unmappable character for encoding ASCII
Line line_30deg2 = new Line(10.0, 312.0, 446.4102, 12.0); // 400px long line, 30??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1765: warning: unmappable character for encoding ASCII
Line line_30deg2 = new Line(10.0, 312.0, 446.4102, 12.0); // 400px long line, 30??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1766: warning: unmappable character for encoding ASCII
Line line_m60deg = new Line(10.0, 10, 300.0, 446.4102); // 400px long line, 60??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1766: warning: unmappable character for encoding ASCII
Line line_m60deg = new Line(10.0, 10, 300.0, 446.4102); // 400px long line, 60??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1795: warning: unmappable character for encoding ASCII
System.out.println(String.format("Found maxima at %.1f, expected it at 30??.\n", center, 30));
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1795: warning: unmappable character for encoding ASCII
System.out.println(String.format("Found maxima at %.1f, expected it at 30??.\n", center, 30));
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1805: warning: unmappable character for encoding ASCII
System.out.println(String.format("Found maxima at %.1f, expected it at 30??.\n", center, 30));
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1805: warning: unmappable character for encoding ASCII
System.out.println(String.format("Found maxima at %.1f, expected it at 30??.\n", center, 30));
^
38 warnings
Building plugins/Statistical_Region_Merging.jar <- src-plugins/Sta...
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Statistical_Region_Merging
Building plugins/Descriptor_based_registration.jar <- src-plugins/...
Compiling 16 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 137 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LocalCoordinateSystemPointDescriptor.java:11: package mpicbg.pointdescriptor.fit does not exist
import mpicbg.pointdescriptor.fit.FitResult;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LocalCoordinateSystemPointDescriptor.java:58: cannot find symbol
symbol : class FitResult
location: class mpicbg.pointdescriptor.LocalCoordinateSystemPointDescriptor<P>
public FitResult fitMatches( final ArrayList<PointMatch> matches ) { return null; }
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/SimplePointDescriptor.java:8: package mpicbg.pointdescriptor.fit does not exist
import mpicbg.pointdescriptor.fit.FitResult;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/SimplePointDescriptor.java:25: cannot find symbol
symbol : class FitResult
location: class mpicbg.pointdescriptor.SimplePointDescriptor<P>
public FitResult fitMatches( final ArrayList<PointMatch> matches ) { return null; }
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantModel.java:6: package mpicbg.pointdescriptor.fit does not exist
import mpicbg.pointdescriptor.fit.FitResult;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantModel.java:15: cannot find symbol
symbol: class FitResult
public abstract class TranslationInvariantModel< M extends TranslationInvariantModel< M > > extends AbstractModel< M > implements FitResult
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
6 errors
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
at fiji.build.minimaven.POM.build(POM.java:221)
at fiji.build.minimaven.POM.build(POM.java:175)
at fiji.build.minimaven.POM.buildJar(POM.java:162)
at fiji.build.SubFake.action(SubFake.java:184)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:256)
at fiji.build.Fake.main(Fake.java:56)
Compile error: 1
in rule plugins/Descriptor_based_registration.jar <- src-plugins/...
in rule all <- ImageJ fiji jars/VectorString.jar jars/ij-app.jar ...
Build step 'Execute shell' marked build as failure
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