[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #654
jenkins at imagej.net
jenkins at imagej.net
Sun Jul 8 20:54:55 CDT 2012
See <http://jenkins.imagej.net/job/Fiji-minimal/654/>
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[...truncated 432 lines...]
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/FlowJ_/src/main/java/FlowJ/FlowJUserInterface.java:658: warning: unmappable character for encoding ASCII
alphaField.setText("" + IJ.d2s(flow.getAlphaDeg(x, y), 2)+"??");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/FlowJ_/src/main/java/FlowJ/FlowJUserInterface.java:658: warning: unmappable character for encoding ASCII
alphaField.setText("" + IJ.d2s(flow.getAlphaDeg(x, y), 2)+"??");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/FlowJ_/src/main/java/FlowJ/FlowJUserInterface.java:685: warning: unmappable character for encoding ASCII
alphaField.setText("avg orientation: " + IJ.d2s(flow.averageAlpha(), 2)+"??");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/FlowJ_/src/main/java/FlowJ/FlowJUserInterface.java:685: warning: unmappable character for encoding ASCII
alphaField.setText("avg orientation: " + IJ.d2s(flow.averageAlpha(), 2)+"??");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/FlowJ_/src/main/java/FlowJ/FlowJUserInterface.java:693: warning: unmappable character for encoding ASCII
alphaField.setText("avg psi: " + IJ.d2s(((FlowJError) display).average(imp.getRoi()), 2)+"??");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/FlowJ_/src/main/java/FlowJ/FlowJUserInterface.java:693: warning: unmappable character for encoding ASCII
alphaField.setText("avg psi: " + IJ.d2s(((FlowJError) display).average(imp.getRoi()), 2)+"??");
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
38 warnings
Building jars/imglib2.jar <- modules/imglib/
Building plugins/Fiji_Updater.jar <- src-plugins/Fiji_Updater/
Compiling 48 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Updater
Building jars/imglib2.jar <- plugins/Fiji_Updater.jar jars/ij.jar ...
Updating the Fiji database (Updating from Fiji site)
Updating the Fiji database 0/1
(process:26220): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
(process:26220): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
Updating from Fiji site done
Done: Updating the Fiji database
Czech Summer (jars/imglib2.jar)
jars/imglib2.jar done
Czech Summer 0/0
Done: Czech Summer
(process:26220): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
Downloading... (jars/imglib2.jar)
Downloading... 148773/400958
jars/imglib2.jar done
Done: Downloading...
Installed jars/imglib2.jar
Building plugins/Interactive_3D_Surface_Plot.jar <- src-plugins/In...
Compiling 12 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:297: warning: unmappable character for encoding ASCII
// IJ.run("Set Scale...", "distance=1.001 known=100 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:297: warning: unmappable character for encoding ASCII
// IJ.run("Set Scale...", "distance=1.001 known=100 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:298: warning: unmappable character for encoding ASCII
// //IJ.run("Set Scale...", "distance=2.2 known=5 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:298: warning: unmappable character for encoding ASCII
// //IJ.run("Set Scale...", "distance=2.2 known=5 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:299: warning: unmappable character for encoding ASCII
IJ.run("Set Scale...", "distance=12 known=100 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:299: warning: unmappable character for encoding ASCII
IJ.run("Set Scale...", "distance=12 known=100 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:300: warning: unmappable character for encoding ASCII
// //IJ.run("Set Scale...", "distance=30 known=0.5 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:300: warning: unmappable character for encoding ASCII
// //IJ.run("Set Scale...", "distance=30 known=0.5 pixel=1 unit=??m");
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
8 warnings
Building plugins/bUnwarpJ_.jar <- src-plugins/bUnwarpJ_/
Compiling 18 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/bUnwarpJ_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/bUnwarpJ_/src/main/java/math/BSpline.java:35: warning: unmappable character for encoding ASCII
* Ref: A. Mu??oz-Barrutia, T. Blu, M. Unser, "Least-Squares Image Resizing
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/bUnwarpJ_/src/main/java/math/BSpline.java:35: warning: unmappable character for encoding ASCII
* Ref: A. Mu??oz-Barrutia, T. Blu, M. Unser, "Least-Squares Image Resizing
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/BSplineModel.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 warnings
Building jars/imglib2-algorithms.jar <- jars/imglib2.jar modules/i...
Building jars/imglib2-algorithms.jar <- plugins/Fiji_Updater.jar j...
Updating the Fiji database (Updating from Fiji site)
Updating the Fiji database 0/1
(process:26326): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
(process:26326): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
Updating from Fiji site done
Done: Updating the Fiji database
Czech Summer (jars/imglib2.jar)
jars/imglib2.jar done
Czech Summer 400958/400958
Czech Summer (jars/imglib2-algorithms.jar)
jars/imglib2-algorithms.jar done
Done: Czech Summer
Not updating jars/imglib2.jar (INSTALLED)
(process:26326): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
Downloading... (jars/imglib2-algorithms.jar)
jars/imglib2-algorithms.jar done
Done: Downloading...
Installed jars/imglib2-algorithms.jar
Building plugins/SPIM_Opener.jar <- src-plugins/SPIM_Opener/
Building plugins/LSM_Toolbox.jar <- src-plugins/LSM_Toolbox/
Compiling 6 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/LSM_Reader
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/LSM_Reader/src/main/java/org/imagearchive/lsm/reader/Reader.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 46 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/LSM_Toolbox
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/LSM_Toolbox/src/main/java/LSM_Toolbox.java:34: warning: unmappable character for encoding ASCII
* (C) 2003-2008 Patrick Pirrotte, J??r??me Mutterer
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/LSM_Toolbox/src/main/java/LSM_Toolbox.java:34: warning: unmappable character for encoding ASCII
* (C) 2003-2008 Patrick Pirrotte, J??r??me Mutterer
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/LSM_Toolbox/src/main/java/LSM_Toolbox.java:34: warning: unmappable character for encoding ASCII
* (C) 2003-2008 Patrick Pirrotte, J??r??me Mutterer
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/LSM_Toolbox/src/main/java/LSM_Toolbox.java:34: warning: unmappable character for encoding ASCII
* (C) 2003-2008 Patrick Pirrotte, J??r??me Mutterer
^
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
4 warnings
Building plugins/Javascript_.jar <- src-plugins/Javascript_/
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Javascript_
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Javascript_/src/main/java/Javascript/Javascript_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building plugins/View5D_.jar <- src-plugins/View5D_/
Compiling 37 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/View5D_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/View5D_/src/main/java/view5d/ImageCanvas.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Building plugins/LSM_Reader.jar <- src-plugins/LSM_Reader/
Building plugins/Multi_Kymograph.jar <- src-plugins/Multi_Kymograph/
Compiling 4 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Multi_Kymograph
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Building plugins/Color_Inspector_3D.jar <- src-plugins/Color_Inspe...
Compiling 4 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Building plugins/RandomJ_.jar <- src-plugins/RandomJ_/
Compiling 66 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/imagescience
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/imagescience/src/main/java/imagescience/image/Image.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 11 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/RandomJ_
Building plugins/Thread_Killer.jar <- src-plugins/Thread_Killer/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Thread_Killer
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Thread_Killer/src/main/java/Thread_Killer.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Building plugins/BeanShell_Interpreter.jar <- src-plugins/BeanShel...
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/BeanShell_Interpreter
Building plugins/3D_Viewer.jar <- src-plugins/3D_Viewer/
Building plugins/Lasso_and_Blow_Tool.jar <- src-plugins/Lasso_and_...
Compiling 5 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Lasso_and_Blow_Tool
Building plugins/Algorithm_Launcher.jar <- src-plugins/Algorithm_L...
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Algorithm_Launcher
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmInfo.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building plugins/Siox_Segmentation.jar <- src-plugins/Siox_Segment...
Compiling 19 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Siox_Segmentation
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Siox_Segmentation/src/main/java/org/siox/util/Utils.java:421: warning: unmappable character for encoding ASCII
final float X=95.047f*var_X; //ref_X= 95.047 Observer=2???, Illuminant=D65
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Siox_Segmentation/src/main/java/org/siox/util/Utils.java:421: warning: unmappable character for encoding ASCII
final float X=95.047f*var_X; //ref_X= 95.047 Observer=2???, Illuminant=D65
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Siox_Segmentation/src/main/java/org/siox/util/Utils.java:421: warning: unmappable character for encoding ASCII
final float X=95.047f*var_X; //ref_X= 95.047 Observer=2???, Illuminant=D65
^
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ControlJPanel.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
3 warnings
Building plugins/VIB_.jar <- src-plugins/VIB_/
Compiling 117 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB_/src/main/java/Biorad_Writer.java:85: warning: unmappable character for encoding ASCII
if(fi.unit.equals("??m") || fi.unit.equals("um")) fi.unit="microns";
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB_/src/main/java/Biorad_Writer.java:85: warning: unmappable character for encoding ASCII
if(fi.unit.equals("??m") || fi.unit.equals("um")) fi.unit="microns";
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 warnings
Building plugins/blockmatching_.jar <- src-plugins/blockmatching_/
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/blockmatching_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/blockmatching_/src/main/java/mpicbg/ij/plugin/BlockMatching_TestParameters.java:211: cannot find symbol
symbol : method colorCircle(ij.process.ColorProcessor)
location: class mpicbg.ij.util.Util
mpicbg.ij.util.Util.colorCircle( ipScale );
^
1 error
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
at fiji.build.minimaven.POM.build(POM.java:221)
at fiji.build.minimaven.POM.buildJar(POM.java:162)
at fiji.build.SubFake.action(SubFake.java:176)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:256)
at fiji.build.Fake.main(Fake.java:56)
Compile error: 1
in rule plugins/blockmatching_.jar <- src-plugins/blockmatching_/
in rule all <- ImageJ fiji jars/ij.jar plugins/loci_tools.jar jar...
Build step 'Execute shell' marked build as failure
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