[ImageJ-builds] Build failed in Jenkins: fiji-full #416
Jenkins Daemon
jenkins at qa.nest-initiative.org
Sun Jul 8 20:34:20 CDT 2012
See <https://qa.nest-initiative.org/job/fiji-full/416/changes>
Changes:
[johannes.schindelin] Fiji Build: never ask MiniMaven for a dependency without groupId or version
[johannes.schindelin] MiniMaven: get rid of all that groupId == null, version == null handling
[johannes.schindelin] MiniMaven: do not accept too-old versions from multi-projects
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Leaving modules/batik/
Checking prerequisites of (fiji.build.SubFake) plugins/register_virtual_stack_slice...
Building (fiji.build.SubFake) plugins/register_virtual_stack_slice...
Parsing src-plugins/register_virtual_stack_slices/pom.xml
Warning: <https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg.jar> overrides mpicbg>mpicbg
Parsing /home/jenkins/.m2/repository/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.pom
Compiling 18 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/math/BSpline.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/FinalAction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/PointHandler.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/CumulativeQueue.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/BSplineModel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/Mask.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/PointToolbar.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/Credits.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/bUnwarpJ_.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/IODialog.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/PointAction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/MathTools.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/MiscTools.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/ProgressBar.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/Transformation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/Param.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/ClearAll.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/MainDialog.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/BSplineModel.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/register_virtual_stack_slices>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/register_virtual_stack_slices/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/register_virtual_stack_slices/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Transform_Virtual_Stack_MT.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/register_virtual_stack_slices/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/View5D_.jar <- src-plugins/V...
Building (fiji.build.SubFake) plugins/View5D_.jar <- src-plugins/V...
Parsing src-plugins/View5D_/pom.xml
Compiling 37 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/PositionLabel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/APoint.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/FloatElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/OneElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/ImageErr.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/PlotInfo.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/AlternateViewer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/View5D_.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/ComplexElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/View5D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/RectROI.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/ASlice.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/TaggedText.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/IntegerElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/My3DData.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/PixelDisplay.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/TaggedComponent.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/MyMenuProcessor.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/AGenericDialog.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/PlaneROI.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/AnElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/DoubleElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/ImageCanvas.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/TaggedDouble.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/TaggedMessage.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/ShortElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/TaggedCheck.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/MarkerList.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/TaggedChoice.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/PolyROI.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/MarkerLists.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/ImgPanel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/ByteElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/ZeroElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/ROI.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/ANGenericDialog.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/Bundle.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/View5D_/src/main/java/view5d/ImageCanvas.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Checking prerequisites of (fiji.build.SubFake) plugins/Siox_Segmentation.jar <- src...
Building (fiji.build.SubFake) plugins/Siox_Segmentation.jar <- src...
Parsing src-plugins/Siox_Segmentation/pom.xml
Compiling 19 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/ColorSignature.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/util/IntHashMap.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/util/IntArrayList.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/util/Utils.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/JRuler.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ExtensionFileFilter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ImagePane.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/Main.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ControlJPanel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ScrollDisplay.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/CursorFactory.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/SioxSegmentator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/siox/SegmentationGUI.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/siox/SegmentationInfo.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/siox/ImageOverlay.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/siox/ControlJPanel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/siox/RoiOverlay.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/siox/Siox_Segmentation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/siox/Load_Segmentation.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ControlJPanel.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/TrakEM2_.jar <- jars/ij.jar ...
Checking prerequisites of (fiji.build.SubFake) jars/imglib.jar <- jars/mpicbg.jar m...
Parsing modules/imglib/pom.xml
Parsing <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/pom.xml>
Checking prerequisites of (fiji.build.SubFake) plugins/Fiji_Plugins.jar <- src-plug...
Building (fiji.build.SubFake) plugins/Fiji_Plugins.jar <- src-plug...
Parsing src-plugins/Fiji_Plugins/pom.xml
Compiling 22 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MFWithGradient.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/UnivariateFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/LineFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/BoundsCheckedFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/DifferentialEvolution.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MathUtils.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/UnivariateMinimum.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MachineAccuracy.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/ConjugateDirectionSearch.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/OrthogonalLineFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/StochasticOSearch.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MersenneTwisterFast.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/Binomial.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MultivariateMinimum.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/UrnModel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/ErrorFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/ConjugateGradientSearch.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MultivariateFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/NumericalDerivative.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/GammaFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/GeneralizedDEOptimizer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/OrthogonalSearch.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes>
Compiling 190 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib>
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<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/video/VideoStack.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/delaunay/DelaunayTriangulation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/delaunay/Triangulation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/delaunay/Simplex.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/delaunay/Pnt.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/leica/LeicaSPReader.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/adt/Byte3DArray.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/adt/PixelStats.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/adt/Unsparse3DByteArray.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/adt/Connectivity2D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/adt/ByteProbability.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/adt/Points.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/adt/Sparse3DByteArray.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/events/SliceListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/events/SliceEvent.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/events/RoiListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/events/SliceWatcher.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/events/RoiEvent.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/events/RoiWatcher.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/gui/GuiBuilder.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/amira/AmiraMeshEncoder.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/amira/AmiraMeshDecoder.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/amira/AmiraTableEncoder.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/amira/AmiraTable.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/amira/AmiraParameters.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/nrrd/NrrdInfo.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/nrrd/NrrdHeader.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 32 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/SEDT.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/EDT.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/CompositeConverter2.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Radial_Reslice.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Hyperstack_rearranger.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Binary_to_Point_Selection.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Rounded_Rectangle.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Select_Bounding_Box.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta_Clipboard.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/denoise/ROF_Denoise.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Linear_Gradient.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Radial_Gradient.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Fiji_Uploader.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NNearestNeighborSearch.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Circle_Fitter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Recent_Commands.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NearestNeighborSearch.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/DistanceComparator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/NonLeaf.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Node.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/SimpleNode.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Leaf.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/CurrentSlice.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/TestKDTree.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/RadiusNeighborSearch.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/KDTree.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/AreaCalculations.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/help/Context_Help.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.ExecuteProgram) jars/jai_core.jar <-
jars/jai_core.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:26 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Building (fiji.build.ExecuteProgram) jars/jai_core.jar <-
jars/jai_core.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:26 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Checking prerequisites of (fiji.build.ExecuteProgram) jars/jcommon.jar <-
jars/jcommon.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:26 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Building (fiji.build.ExecuteProgram) jars/jcommon.jar <-
jars/jcommon.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:26 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Checking prerequisites of (fiji.build.ExecuteProgram) jars/jfreechart.jar <-
jars/jfreechart.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:26 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Building (fiji.build.ExecuteProgram) jars/jfreechart.jar <-
jars/jfreechart.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:26 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Checking prerequisites of (fiji.build.SubFake) plugins/bUnwarpJ_.jar <- src-plugins...
Building (fiji.build.SubFake) plugins/bUnwarpJ_.jar <- src-plugins...
Parsing src-plugins/bUnwarpJ_/pom.xml
Checking prerequisites of (fiji.build.SubFake) plugins/3D_Viewer.jar <- src-plugins...
Building (fiji.build.SubFake) plugins/3D_Viewer.jar <- src-plugins...
Parsing src-plugins/3D_Viewer/pom.xml
Parsing /home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.pom
Parsing /home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.pom
Parsing /home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.pom
Compiling 121 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/classes>:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar, -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/process3d/Smooth_.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/CustomLineMesh.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/CustomIndexedTriangleMesh.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/Sphere.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/EdgeContraction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/CustomTransparentTriangleMesh.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/Mesh_Maker.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/CustomMultiMesh.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/WavefrontExporter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/STLLoader.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/CustomTriangleMesh.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/CustomMesh.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/u3d/ContextManager.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/u3d/BitStreamRead.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/src/main/java/customnode/u3d/DataBlock.java,> 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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/classes>:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) jars/VIB-lib.jar <- jars/ij.jar jars...
Checking prerequisites of (fiji.build.ExecuteProgram) jars/jzlib.jar <-
jars/jzlib.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:26 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Building (fiji.build.ExecuteProgram) jars/jzlib.jar <-
jars/jzlib.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:26 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Checking prerequisites of (fiji.build.SubFake) jars/fiji-lib.jar <- src-plugins/fij...
Parsing src-plugins/fiji-lib/pom.xml
Checking prerequisites of (fiji.build.SubFake) jars/pal-optimization.jar <- src-plu...
Parsing src-plugins/pal-optimization/pom.xml
Parsing src-plugins/VIB-lib/pom.xml
Checking prerequisites of (fiji.build.ExecuteProgram) jars/postgresql.jar <-
jars/postgresql.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:26 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Building (fiji.build.ExecuteProgram) jars/postgresql.jar <-
jars/postgresql.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:26 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Checking prerequisites of (fiji.build.SubFake) plugins/VIB_.jar <- src-plugins/VIB_/
Building (fiji.build.SubFake) plugins/VIB_.jar <- src-plugins/VIB_/
Parsing src-plugins/VIB_/pom.xml
Compiling 117 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB_>
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<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB_/src/main/java/Delaunay_Voronoi.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB_/src/main/java/KD_Cartoon.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB_/src/main/java/Triangle_Algorithm.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB_/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/classes>:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) jars/VectorString.jar <- jars/ij.jar...
Building (fiji.build.SubFake) jars/VectorString.jar <- jars/ij.jar...
Building in modules/TrakEM2/
Checking prerequisites of (fiji.build.CompileJar) VectorString.jar <- ini/trakem2/v...
VectorString.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) VectorString.jar <- ini/trakem2/v...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString> -source 1.5 -target 1.5 -classpath jars/ij.jar:jars/Jama.jar:java/linux/jdk1.6.0_24/jre/lib/ext/j3dcore.jar:java/linux/jdk1.6.0_24/jre/lib/ext/j3dutils.jar:java/linux/jdk1.6.0_24/jre/lib/ext/vecmath.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext ./modules/TrakEM2/ini/trakem2/vector/SkinMaker.java ./modules/TrakEM2/ini/trakem2/vector/Util.java ./modules/TrakEM2/ini/trakem2/vector/VectorString2D.java ./modules/TrakEM2/ini/trakem2/vector/VectorString3D.java ./modules/TrakEM2/ini/trakem2/vector/VectorString.java ./modules/TrakEM2/ini/trakem2/vector/Editions.java
Making ./modules/TrakEM2/VectorString.jar from <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString/ini/trakem2/vector/Editions$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString/ini/trakem2/vector/Editions$Chunk.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString/ini/trakem2/vector/Editions$MinDist.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString/ini/trakem2/vector/Editions.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString/ini/trakem2/vector/SkinMaker$Match.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString/ini/trakem2/vector/SkinMaker.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString/ini/trakem2/vector/Util.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString/ini/trakem2/vector/VectorString.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString/ini/trakem2/vector/VectorString2D.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString/ini/trakem2/vector/VectorString3D$ResamplingData.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString/ini/trakem2/vector/VectorString3D$Vector.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/VectorString/ini/trakem2/vector/VectorString3D.class>
Leaving modules/TrakEM2/
Checking prerequisites of (fiji.build.SubFake) plugins/Simple_Neurite_Tracer.jar <-...
Building (fiji.build.SubFake) plugins/Simple_Neurite_Tracer.jar <-...
Parsing src-plugins/Simple_Neurite_Tracer/pom.xml
Warning: <https://qa.nest-initiative.org/job/fiji-full/ws/jars/jcommon.jar> overrides jfree>jcommon
Compiling 6 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Vertex.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/SkeletonResult.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Point.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Edge.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Graph.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Skeletonize3D_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Skeletonize3D_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Skeletonize3D_/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Skeletonize3D_/src/main/java/Skeletonize3D_/Skeletonize3D_.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Skeletonize3D_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>
Compiling 57 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer>
[-source, 1.5, -target, 1.5, -classpath, 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<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SNTEvent.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SearchNode.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/ClarifyingKeyListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/FillerProgressCallback.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/MultiTaskProgress.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/NewAnalyzeTracings_.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathColorsCanvas.java,> 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<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Test2DTracing.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Load_Auto_Traces.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/FillWindow.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Fill.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathResult.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Test3DTracing.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/FittingProgress.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PointSelectionBehavior.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathWindow.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/ShollAnalysisDialog.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/NearPoint.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/FillerThread.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SinglePathsGraph.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SearchThread.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/AutoPoint.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Simple_Neurite_Tracer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/EigenResultsFloat.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PointInImage.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/InteractiveTracerCanvas.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Connectivity.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/TracerThread.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SWCImportOptionsDialog.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathAndFillManager.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Test_Single_Voxel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SearchProgressCallback.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SimpleNeuriteTracer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Auto_Tracer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/GraphNode.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/AutoSearchThread.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/TubularGeodesicsTracer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/NormalPlaneCanvas.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SearchInterface.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathTransformer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/EigenResultsDouble.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/CMTKInversePathTransformer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/TracerCanvas.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Skeletonize3D_/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB_/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/batik.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/commons-math/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/classes>:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jcommon.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jfreechart.jar>:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Checking prerequisites of (fiji.build.SubFake) plugins/level_sets.jar <- src-plugin...
Building (fiji.build.SubFake) plugins/level_sets.jar <- src-plugin...
Parsing src-plugins/level_sets/pom.xml
Compiling 35 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/MorphologicalOperator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Filter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/GreyScaleFilter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/SimpleEdgeDetect.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Canny.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/UnsetPixel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/SUSAN.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/GreyValueErosion.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Dilatation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/ConvolutionFilter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Erosion.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/BufferedImageBuilder.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/MedianFilter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Sobel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/ij/ImageProgressContainer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/ij/StateContainer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/ij/ImageContainer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/ij/LevelSet.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/LevelSetFactory.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/SparseFieldLevelSet.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/Coordinate.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/StagedAlgorithm.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/ActiveContours.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredObjectArray3D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredByteArray3D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/BandElementCache.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/BandElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredArray3D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredIntArray3D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/FastMarchingBandElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/FastMarching.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DenseFieldLevelSet.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/LevelSetImplementation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/GeodesicActiveContour.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredDoubleArray3D.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/tools.jar>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) jars/imglib-algorithms.jar <- jars/J...
Checking prerequisites of (fiji.build.ExecuteProgram) jars/edu_mines_jtk.jar <-
jars/edu_mines_jtk.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Building (fiji.build.ExecuteProgram) jars/edu_mines_jtk.jar <-
jars/edu_mines_jtk.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Parsing modules/imglib/pom.xml
Parsing <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/pom.xml>
Checking prerequisites of (fiji.build.ExecuteProgram) jars/jai_codec.jar <-
jars/jai_codec.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:26 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Building (fiji.build.ExecuteProgram) jars/jai_codec.jar <-
jars/jai_codec.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-full/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:26 CEST 2012 < Mon Jul 09 03:32:33 CEST 2012
Checking prerequisites of (fiji.build.SubFake) jars/imglib-ij.jar <- jars/ij.jar ja...
Parsing modules/imglib/pom.xml
Parsing <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/pom.xml>
Checking prerequisites of (fiji.build.SubFake) plugins/mpicbg_.jar <- jars/ij.jar j...
Building (fiji.build.SubFake) plugins/mpicbg_.jar <- jars/ij.jar j...
Building in modules/mpicbg/
Checking prerequisites of (fiji.build.CompileJar) mpicbg_.jar <- mpicbg/ij/plugin/A...
mpicbg_.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) mpicbg_.jar <- mpicbg/ij/plugin/A...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_> -source 1.6 -target 1.6 -classpath jars/ij.jar:jars/mpicbg.jar:./modules/mpicbg/mpicbg.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext ./modules/mpicbg/mpicbg/ij/plugin/AbstractBlockFilter.java ./modules/mpicbg/SIFT_ExtractPointRoi.java ./modules/mpicbg/mpicbg/ij/plugin/StandardDeviation.java ./modules/mpicbg/mpicbg/ij/plugin/ElasticAlign.java ./modules/mpicbg/Transform_Affine.java ./modules/mpicbg/mpicbg/ij/plugin/PMCCBlockFlow.java ./modules/mpicbg/mpicbg/ij/plugin/RemoveSaturated.java ./modules/mpicbg/mpicbg/ij/plugin/NormalizeLocalContrast.java ./modules/mpicbg/mpicbg/ij/plugin/ElasticMontage.java ./modules/mpicbg/mpicbg/ij/plugin/DiffusionMask.java ./modules/mpicbg/Transform_MovingLeastSquaresMesh.java ./modules/mpicbg/MOPS_ExtractPointRoi.java ./modules/mpicbg/Transform_Similarity.java ./modules/mpicbg/mpicbg/ij/plugin/MSEGaussianFlow.java ./modules/mpicbg/mpicbg/ij/plugin/MSEBlockFlow.java ./modules/mpicbg/mpicbg/ij/plugin/RemoveOutliers.java ./modules/mpicbg/Find_PointRoi.java ./modules/mpicbg/mpicbg/ij/plugin/AbstractBlockStatistics.java ./modules/mpicbg/mpicbg/ij/plugin/AlignStacksWithLandmarks.java ./modules/mpicbg/Transform_Roi.java ./modules/mpicbg/Transform_Rigid.java ./modules/mpicbg/Transform_RegularizedAffine.java ./modules/mpicbg/Stack_Rotate.java ./modules/mpicbg/SIFT_Align.java ./modules/mpicbg/mpicbg/ij/plugin/SampleVariance.java ./modules/mpicbg/mpicbg/ij/plugin/Mean.java ./modules/mpicbg/Transform_Perspective.java
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: ./modules/mpicbg/SIFT_Align.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making ./modules/mpicbg/mpicbg_.jar from <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Find_PointRoi.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/MOPS_ExtractPointRoi$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/MOPS_ExtractPointRoi$Param.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/MOPS_ExtractPointRoi.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/SIFT_Align$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/SIFT_Align$Param.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/SIFT_Align.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/SIFT_ExtractPointRoi$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/SIFT_ExtractPointRoi$Param.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/SIFT_ExtractPointRoi.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Stack_Rotate$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Stack_Rotate$GUI.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Stack_Rotate$MappingThread.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Stack_Rotate.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_Affine.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_MovingLeastSquaresMesh.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_Perspective.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_RegularizedAffine.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_Rigid.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_Roi.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_Similarity.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/AbstractBlockFilter.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/AbstractBlockStatistics.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/AlignStacksWithLandmarks.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/DiffusionMask.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign$2.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign$Features.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign$Param.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign$PointMatches.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign$Triple.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticMontage$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticMontage$2.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticMontage$Features.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticMontage$Param.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticMontage$PointMatches.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticMontage$Triple.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticMontage.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/MSEBlockFlow.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/MSEGaussianFlow.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/Mean.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/NormalizeLocalContrast.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/PMCCBlockFlow.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/RemoveOutliers.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/RemoveSaturated.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/SampleVariance.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/StandardDeviation.class> LICENSE plugins.config
Leaving modules/mpicbg/
Building (fiji.build.SubFake) plugins/TrakEM2_.jar <- jars/ij.jar ...
Building in modules/TrakEM2/
Checking prerequisites of (fiji.build.CompileJar) TrakEM2_.jar <- ini/trakem2/imagi...
TrakEM2_.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) TrakEM2_.jar <- ini/trakem2/imagi...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/TrakEM2_> -source 1.5 -target 1.5 -classpath jars/ij.jar:jars/jai_core.jar:jars/jai_codec.jar:jars/VectorString.jar:jars/postgresql.jar:jars/jcommon.jar:jars/jfreechart.jar:jars/edu_mines_jtk.jar:jars/VIB-lib.jar:plugins/VIB_.jar:jars/mpicbg.jar:plugins/loci_tools.jar:plugins/bUnwarpJ_.jar:plugins/level_sets.jar:plugins/Fiji_Plugins.jar:jars/Jama.jar:jars/imglib.jar:jars/imglib-algorithms.jar:jars/imglib-ij.jar:plugins/Simple_Neurite_Tracer.jar:plugins/3D_Viewer.jar:plugins/Lasso_and_Blow_Tool.jar:plugins/mpicbg_.jar:java/linux/jdk1.6.0_24/jre/lib/ext/j3dcore.jar:java/linux/jdk1.6.0_24/jre/lib/ext/j3dutils.jar:java/linux/jdk1.6.0_24/jre/lib/ext/vecmath.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext ./modules/TrakEM2/ini/trakem2/imaging/filters/LUTRed.java ./modules/TrakEM2/mpicbg/trakem2/transform/TranslationModel2D.java ./modules/TrakEM2/ini/trakem2/display/Region.java ./modules/TrakEM2/ini/trakem2/display/NonLinearTransformMode.java ./modules/TrakEM2/ini/trakem2/display/Mode.java ./modules/TrakEM2/ini/trakem2/imaging/BinaryInterpolation2D.java ./modules/TrakEM2/ini/trakem2/display/inspect/ShapeProxy.java ./modules/TrakEM2/ini/trakem2/analysis/Vertex.java ./modules/TrakEM2/ini/trakem2/utils/TaskOnEDT.java ./modules/TrakEM2/ini/trakem2/display/AffineTransformMode.java ./modules/TrakEM2/bunwarpj/trakem2/transform/CubicBSplineTransform.java ./modules/TrakEM2/ini/trakem2/imaging/ImagePreprocessor.java ./modules/TrakEM2/ini/trakem2/display/Overlay.java ./modules/TrakEM2/ini/trakem2/display/AreaContainer.java ./modules/TrakEM2/ini/trakem2/imaging/LayerStack.java ./modules/TrakEM2/ini/trakem2/persistence/StaleFiles.java ./modules/TrakEM2/ini/trakem2/display/DLabel.java ./modules/TrakEM2/mpi/fruitfly/math/Quicksortable.java ./modules/TrakEM2/ini/trakem2/display/Stack.java ./modules/TrakEM2/ini/trakem2/persistence/TMLHandler.java ./modules/TrakEM2/ini/trakem2/display/Selection.java ./modules/TrakEM2/ini/trakem2/display/Displayable.java ./modules/TrakEM2/ini/trakem2/tree/DNDTree.java ./modules/TrakEM2/ini/trakem2/persistence/DownsamplerMipMaps.java ./modules/TrakEM2/ini/trakem2/persistence/ProjectTiler.java ./modules/TrakEM2/ini/trakem2/display/graphics/MultiplyARGBComposite.java ./modules/TrakEM2/ini/trakem2/display/VectorData.java ./modules/TrakEM2/ini/trakem2/utils/StopWatch.java ./modules/TrakEM2/ini/trakem2/utils/FieldMapView.java ./modules/TrakEM2/ini/trakem2/imaging/Blending.java ./modules/TrakEM2/ini/trakem2/display/Bucket.java ./modules/TrakEM2/ini/trakem2/utils/ReconstructArea.java ./modules/TrakEM2/ini/trakem2/persistence/FSLoader.java ./modules/TrakEM2/ini/trakem2/imaging/LazyVirtualStack.java ./modules/TrakEM2/mpi/fruitfly/math/datastructures/FloatArray2D.java ./modules/TrakEM2/ini/trakem2/tree/TrakEM2MLParser.java ./modules/TrakEM2/ini/trakem2/tree/ProjectThing.java ./modules/TrakEM2/ini/trakem2/display/MipMapImage.java ./modules/TrakEM2/mpicbg/trakem2/align/GenericAffineTile2D.java ./modules/TrakEM2/ini/trakem2/io/ImageFileFilter.java ./modules/TrakEM2/ini/trakem2/imaging/FloatProcessorT2.java ./modules/TrakEM2/ini/trakem2/display/RollingPanel.java ./modules/TrakEM2/ini/trakem2/New_Project.java ./modules/TrakEM2/ini/trakem2/tree/RenameThingStep.java ./modules/TrakEM2/ini/trakem2/io/CoordinateTransformXML.java ./modules/TrakEM2/ini/trakem2/utils/OptionPanel.java ./modules/TrakEM2/ini/trakem2/persistence/Loader.java ./modules/TrakEM2/ini/trakem2/imaging/filters/LUTCyan.java ./modules/TrakEM2/ini/trakem2/display/Bucketable.java ./modules/TrakEM2/ini/trakem2/imaging/filters/LUTBlue.java ./modules/TrakEM2/ini/trakem2/utils/TypedHashMap.java ./modules/TrakEM2/ini/trakem2/display/VectorDataTransform.java ./modules/TrakEM2/mpicbg/trakem2/align/AffineTile2D.java ./modules/TrakEM2/ini/trakem2/io/ImageSaver.java ./modules/TrakEM2/ini/trakem2/imaging/FastIntegralImage.java ./modules/TrakEM2/ini/trakem2/display/graphics/DifferenceARGBComposite.java ./modules/TrakEM2/mpi/fruitfly/registration/ImageFilter.java ./modules/TrakEM2/ini/trakem2/analysis/Centrality.java ./modules/TrakEM2/ini/trakem2/display/Paintable.java ./modules/TrakEM2/ini/trakem2/display/AreaTree.java ./modules/TrakEM2/ini/trakem2/imaging/filters/GaussianBlur.java ./modules/TrakEM2/ini/trakem2/display/Layer.java ./modules/TrakEM2/ini/trakem2/display/GroupingMode.java ./modules/TrakEM2/ini/trakem2/display/AreaWrapper.java ./modules/TrakEM2/ini/trakem2/utils/StdOutWindow.java ./modules/TrakEM2/ini/trakem2/display/Line3D.java ./modules/TrakEM2/ini/trakem2/io/RawMipMaps.java ./modules/TrakEM2/mpicbg/trakem2/transform/ExportedTile.java ./modules/TrakEM2/ini/trakem2/tree/TransferableNode.java ./modules/TrakEM2/ini/trakem2/imaging/Segmentation.java ./modules/TrakEM2/ini/trakem2/parallel/TaskFactory.java ./modules/TrakEM2/ini/trakem2/display/Dissector.java ./modules/TrakEM2/ini/trakem2/display/ManualAlignMode.java ./modules/TrakEM2/mpicbg/trakem2/transform/TranslationModel3D.java ./modules/TrakEM2/ini/trakem2/io/ImageFileHeader.java ./modules/TrakEM2/ini/trakem2/imaging/ContrastPlot.java ./modules/TrakEM2/ini/trakem2/display/Treeline.java ./modules/TrakEM2/ini/trakem2/display/Pipe.java ./modules/TrakEM2/ini/trakem2/tree/TemplateThing.java ./modules/TrakEM2/ini/trakem2/display/TreeConnectorsView.java ./modules/TrakEM2/ini/trakem2/utils/Saver.java ./modules/TrakEM2/ini/trakem2/display/FakeImagePlus.java ./modules/TrakEM2/ini/trakem2/display/AbstractRepaintThread.java ./modules/TrakEM2/mpicbg/trakem2/transform/TransformMeshMappingWithMasks.java ./modules/TrakEM2/ini/trakem2/scripting/PatchScript.java ./modules/TrakEM2/ini/trakem2/analysis/Compare.java ./modules/TrakEM2/ini/trakem2/tree/ProjectTree.java ./modules/TrakEM2/ini/trakem2/display/ImageData.java ./modules/TrakEM2/ini/trakem2/utils/M.java ./modules/TrakEM2/ini/trakem2/imaging/filters/SubtractBackground.java ./modules/TrakEM2/mpi/fruitfly/general/MultiThreading.java ./modules/TrakEM2/ini/trakem2/display/LayerSet.java ./modules/TrakEM2/ini/trakem2/display/FakeImageWindow.java ./modules/TrakEM2/ini/trakem2/display/DisplayableChooser.java ./modules/TrakEM2/ini/trakem2/imaging/filters/NormalizeLocalContrast.java ./modules/TrakEM2/mpicbg/trakem2/align/Align.java ./modules/TrakEM2/ini/trakem2/display/DisplayCanvas.java ./modules/TrakEM2/ini/trakem2/imaging/P.java ./modules/TrakEM2/ini/trakem2/display/d3d/ControlClickBehavior.java ./modules/TrakEM2/ini/trakem2/utils/IJError.java ./modules/TrakEM2/ini/trakem2/tree/AbstractTreeTransferHandler.java ./modules/TrakEM2/mpicbg/trakem2/transform/InvertibleCoordinateTransform.java ./modules/TrakEM2/mpicbg/trakem2/align/SimilarityTile2D.java ./modules/TrakEM2/mpicbg/trakem2/transform/AffineModel2D.java ./modules/TrakEM2/ini/trakem2/display/Node.java ./modules/TrakEM2/ini/trakem2/display/DisplayablePanel.java ./modules/TrakEM2/ini/trakem2/display/Tree.java ./modules/TrakEM2/ini/trakem2/imaging/filters/RankFilter.java ./modules/TrakEM2/ini/trakem2/display/LayerPanel.java ./modules/TrakEM2/ini/trakem2/display/Ball.java ./modules/TrakEM2/mpicbg/trakem2/transform/DTD.java ./modules/TrakEM2/ini/trakem2/utils/Search.java ./modules/TrakEM2/ini/trakem2/display/graphics/SubtractARGBComposite.java ./modules/TrakEM2/ini/trakem2/tree/LayerThing.java ./modules/TrakEM2/ini/trakem2/tree/DTDParser.java ./modules/TrakEM2/ini/trakem2/utils/ProjectToolbar.java ./modules/TrakEM2/ini/trakem2/display/graphics/ColorYCbCrComposite.java ./modules/TrakEM2/mpicbg/trakem2/align/Util.java ./modules/TrakEM2/ini/trakem2/display/inspect/InspectPatchTrianglesMode.java ./modules/TrakEM2/mpicbg/trakem2/align/RegularizedAffineLayerAlignment.java ./modules/TrakEM2/ini/trakem2/display/SnapshotPanel.java ./modules/TrakEM2/ini/trakem2/utils/Filter.java ./modules/TrakEM2/ini/trakem2/imaging/filters/EqualizeHistogram.java ./modules/TrakEM2/ini/trakem2/imaging/filters/EnhanceContrast.java ./modules/TrakEM2/ini/trakem2/display/Taggable.java ./modules/TrakEM2/ini/trakem2/utils/Dispatcher.java ./modules/TrakEM2/ini/trakem2/io/AmiraImporter.java ./modules/TrakEM2/ini/trakem2/display/Channel.java ./modules/TrakEM2/ini/trakem2/utils/AreaUtils.java ./modules/TrakEM2/ini/trakem2/display/paint/USHORTPaint.java ./modules/TrakEM2/ini/trakem2/parallel/Process.java ./modules/TrakEM2/ini/trakem2/imaging/filters/IFilter.java ./modules/TrakEM2/ini/trakem2/utils/DNDInsertImage.java ./modules/TrakEM2/mpicbg/trakem2/util/Triple.java ./modules/TrakEM2/mpi/fruitfly/math/datastructures/FloatArray4D.java ./modules/TrakEM2/ini/trakem2/display/Display.java ./modules/TrakEM2/ini/trakem2/utils/Montage.java ./modules/TrakEM2/ini/trakem2/imaging/filters/DefaultMinAndMax.java ./modules/TrakEM2/mpicbg/trakem2/transform/CoordinateTransform.java ./modules/TrakEM2/ini/trakem2/utils/IntegerField.java ./modules/TrakEM2/ini/trakem2/persistence/IntegralImageMipMaps.java ./modules/TrakEM2/ini/trakem2/utils/Utils.java ./modules/TrakEM2/ini/trakem2/utils/BigBrother.java ./modules/TrakEM2/ini/trakem2/imaging/filters/LUTMagenta.java ./modules/TrakEM2/mpicbg/trakem2/transform/ExportUnsignedShort.java ./modules/TrakEM2/mpicbg/trakem2/align/AbstractAffineTile2D.java ./modules/TrakEM2/mpicbg/trakem2/transform/MovingLeastSquaresTransform2.java ./modules/TrakEM2/ini/trakem2/utils/Worker.java ./modules/TrakEM2/mpicbg/trakem2/align/AlignLayersTask.java ./modules/TrakEM2/ini/trakem2/Open_DB_Project.java ./modules/TrakEM2/ini/trakem2/imaging/ContrastEnhancerWrapper.java ./modules/TrakEM2/ini/trakem2/io/LoggingInputStream.java ./modules/TrakEM2/ini/trakem2/persistence/Cache.java ./modules/TrakEM2/ini/trakem2/io/XMLFileFilter.java ./modules/TrakEM2/lenscorrection/DistortionCorrectionTask.java ./modules/TrakEM2/ini/trakem2/display/YesNoDialog.java ./modules/TrakEM2/ini/trakem2/display/graphics/GraphicsSource.java ./modules/TrakEM2/mpicbg/trakem2/align/ElasticLayerAlignment.java ./modules/TrakEM2/ini/trakem2/display/graphics/DefaultGraphicsSource.java ./modules/TrakEM2/ini/trakem2/display/Display3D.java ./modules/TrakEM2/ini/trakem2/display/d3d/Display3DGUI.java ./modules/TrakEM2/ini/trakem2/New_DB_Project.java ./modules/TrakEM2/mpicbg/trakem2/transform/SimilarityModel2D.java ./modules/TrakEM2/ini/trakem2/persistence/XMLOptions.java ./modules/TrakEM2/ini/trakem2/imaging/filters/LUTCustom.java ./modules/TrakEM2/ini/trakem2/display/AreaList.java ./modules/TrakEM2/mpicbg/trakem2/align/AlignTask.java ./modules/TrakEM2/lenscorrection/NonLinearTransform.java ./modules/TrakEM2/ini/trakem2/imaging/filters/LUTGreen.java ./modules/TrakEM2/mpicbg/trakem2/align/TranslationTile2D.java ./modules/TrakEM2/ini/trakem2/tree/LayerTree.java ./modules/TrakEM2/ini/trakem2/parallel/CountingTaskFactory.java ./modules/TrakEM2/ini/trakem2/Project.java ./modules/TrakEM2/ini/trakem2/utils/Vector3.java ./modules/TrakEM2/ini/trakem2/display/Tag.java ./modules/TrakEM2/lenscorrection/PolynomialModel2D.java ./modules/TrakEM2/mpi/fruitfly/general/ArrayConverter.java ./modules/TrakEM2/mpicbg/trakem2/transform/CoordinateTransformList.java ./modules/TrakEM2/mpicbg/trakem2/transform/AffineModel3D.java ./modules/TrakEM2/ini/trakem2/display/TransformationStep.java ./modules/TrakEM2/ini/trakem2/io/NeuroML.java ./modules/TrakEM2/ini/trakem2/display/paint/USHORTPaintContext.java ./modules/TrakEM2/ini/trakem2/utils/RedPhone.java ./modules/TrakEM2/ini/trakem2/display/Coordinate.java ./modules/TrakEM2/ini/trakem2/persistence/ImageBytes.java ./modules/TrakEM2/ini/trakem2/imaging/PatchStack.java ./modules/TrakEM2/ini/trakem2/display/ZDisplayable.java ./modules/TrakEM2/ini/trakem2/tree/Thing.java ./modules/TrakEM2/ini/trakem2/persistence/FilePathRepair.java ./modules/TrakEM2/ini/trakem2/display/AbstractOffscreenThread.java ./modules/TrakEM2/mpicbg/trakem2/align/ElasticMontage.java ./modules/TrakEM2/mpicbg/trakem2/transform/TransformMesh.java ./modules/TrakEM2/ini/trakem2/imaging/filters/CLAHE.java ./modules/TrakEM2/ini/trakem2/io/RagMipMaps.java ./modules/TrakEM2/ini/trakem2/display/graphics/TestGraphicsSource.java ./modules/TrakEM2/mpi/fruitfly/math/General.java ./modules/TrakEM2/mpi/fruitfly/general/ImageArrayConverter.java ./modules/TrakEM2/ini/trakem2/display/FreeHandProfile.java ./modules/TrakEM2/mpicbg/trakem2/align/AbstractElasticAlignment.java ./modules/TrakEM2/mpicbg/trakem2/transform/RigidModel2D.java ./modules/TrakEM2/ini/trakem2/persistence/DBObject.java ./modules/TrakEM2/mpicbg/trakem2/align/RigidTile2D.java ./modules/TrakEM2/ini/trakem2/display/Polyline.java ./modules/TrakEM2/lenscorrection/Distortion_Correction.java ./modules/TrakEM2/ini/trakem2/display/Patch.java ./modules/TrakEM2/ini/trakem2/imaging/StitchingTEM.java ./modules/TrakEM2/ini/trakem2/imaging/filters/LUTYellow.java ./modules/TrakEM2/ini/trakem2/tree/TemplateTree.java ./modules/TrakEM2/ini/trakem2/imaging/filters/Normalize.java ./modules/TrakEM2/ini/trakem2/display/ImageJCommandListener.java ./modules/TrakEM2/mpi/fruitfly/math/datastructures/FloatArray3D.java ./modules/TrakEM2/ini/trakem2/display/DoStep.java ./modules/TrakEM2/mpicbg/trakem2/transform/MovingLeastSquaresTransform.java ./modules/TrakEM2/ini/trakem2/Open_Project.java ./modules/TrakEM2/ini/trakem2/imaging/filters/FilterEditor.java ./modules/TrakEM2/ini/trakem2/display/Profile.java ./modules/TrakEM2/mpicbg/trakem2/util/Downsampler.java ./modules/TrakEM2/ini/trakem2/utils/Merger.java ./modules/TrakEM2/ini/trakem2/display/DisplayNavigator.java ./modules/TrakEM2/ini/trakem2/tree/DefaultTreeTransferHandler.java ./modules/TrakEM2/ini/trakem2/ControlWindow.java ./modules/TrakEM2/mpi/fruitfly/registration/CrossCorrelation2D.java ./modules/TrakEM2/ini/trakem2/analysis/Graph.java ./modules/TrakEM2/ini/trakem2/persistence/DBLoader.java ./modules/TrakEM2/ini/trakem2/tree/TitledThing.java ./modules/TrakEM2/ini/trakem2/utils/CachingThread.java ./modules/TrakEM2/ini/trakem2/utils/Lock.java ./modules/TrakEM2/mpicbg/trakem2/align/TileConfiguration.java ./modules/TrakEM2/ini/trakem2/display/DefaultMode.java ./modules/TrakEM2/mpi/fruitfly/math/datastructures/FloatArray.java ./modules/TrakEM2/ini/trakem2/imaging/filters/Invert.java ./modules/TrakEM2/ini/trakem2/display/ContrastAdjustmentMode.java ./modules/TrakEM2/ini/trakem2/plugin/TPlugIn.java ./modules/TrakEM2/ini/trakem2/display/graphics/AddARGBComposite.java ./modules/TrakEM2/ini/trakem2/imaging/filters/ResetMinAndMax.java ./modules/TrakEM2/ini/trakem2/imaging/PhaseCorrelationCalculator.java ./modules/TrakEM2/ini/trakem2/utils/Render.java ./modules/TrakEM2/mpicbg/trakem2/transform/InvertibleCoordinateTransformList.java ./modules/TrakEM2/ini/trakem2/imaging/filters/LUTOrange.java ./modules/TrakEM2/ini/trakem2/display/Connector.java ./modules/TrakEM2/ini/trakem2/utils/History.java ./modules/TrakEM2/ini/trakem2/utils/Bureaucrat.java ./modules/TrakEM2/mpicbg/trakem2/transform/TransformMeshMapping.java ./modules/TrakEM2/ini/trakem2/utils/Operation.java
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
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<https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/TrakEM2_/mpicbg/trakem2/transform/ExportUnsignedShort$PatchIntensityRange.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/TrakEM2_/mpicbg/trakem2/transform/ExportUnsignedShort$PatchTransform.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/TrakEM2_/mpicbg/trakem2/transform/ExportUnsignedShort.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/TrakEM2_/mpicbg/trakem2/transform/ExportedTile.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/TrakEM2_/mpicbg/trakem2/transform/InvertibleCoordinateTransform.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/TrakEM2_/mpicbg/trakem2/transform/InvertibleCoordinateTransformList.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/TrakEM2_/mpicbg/trakem2/transform/MovingLeastSquaresTransform$1.class> 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<https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/TrakEM2_/mpicbg/trakem2/util/Downsampler$Entry.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/TrakEM2_/mpicbg/trakem2/util/Downsampler$Pair.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/TrakEM2_/mpicbg/trakem2/util/Downsampler.class> <https://qa.nest-initiative.org/job/fiji-full/ws/./modules/TrakEM2/build/TrakEM2_/mpicbg/trakem2/util/Triple.class> img/visible.png img/invisible.png img/linked.png img/locked.png img/unlinked.png plugins.config img/unlocked.png
Leaving modules/TrakEM2/
plugins/TrakEM2_.jar does not exist yet
Checking prerequisites of (fiji.build.SubFake) plugins/Trainable_Segmentation.jar <...
Building (fiji.build.SubFake) plugins/Trainable_Segmentation.jar <...
Parsing src-plugins/Trainable_Segmentation/pom.xml
Parsing /home/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.pom
Parsing /home/jenkins/.m2/repository/org/sonatype/oss/oss-parent/7/oss-parent-7.pom
Parsing /home/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.pom
Parsing /home/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-parent/1.5.10/slf4j-parent-1.5.10.pom
Parsing /home/jenkins/.m2/repository/log4j/log4j/1.2.14/log4j-1.2.14.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-log4j12/1.5.10/slf4j-log4j12-1.5.10.pom
java.lang.NullPointerException
at fiji.build.minimaven.BuildEnvironment.compareVersion(BuildEnvironment.java:430)
at fiji.build.minimaven.POM.findPOM(POM.java:519)
at fiji.build.minimaven.POM.getDependencies(POM.java:392)
at fiji.build.minimaven.POM.getDependencies(POM.java:414)
at fiji.build.minimaven.POM.getDependencies(POM.java:414)
at fiji.build.minimaven.POM.getDependencies(POM.java:414)
at fiji.build.minimaven.POM.getDependencies(POM.java:414)
at fiji.build.minimaven.POM.getDependencies(POM.java:414)
at fiji.build.minimaven.POM.getDependencies(POM.java:414)
at fiji.build.minimaven.POM.getDependencies(POM.java:380)
at fiji.build.minimaven.POM.downloadDependencies(POM.java:93)
at fiji.build.SubFake.action(SubFake.java:175)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:256)
at fiji.build.Fake.main(Fake.java:56)
null
in rule (fiji.build.SubFake) plugins/Trainable_Segmentation.jar <...
in rule (fiji.build.All) all <- ImageJ fiji jars/ij.jar plugins/l...
Build step 'Execute shell' marked build as failure
Archiving artifacts
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