[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #646
jenkins at imagej.net
jenkins at imagej.net
Sun Jul 8 20:33:11 CDT 2012
See <http://jenkins.imagej.net/job/Fiji-minimal/646/>
------------------------------------------
[...truncated 674 lines...]
Note: Recompile with -Xlint:unchecked for details.
10 warnings
Building plugins/SplineDeformationGenerator_.jar <- src-plugins/Sp...
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SplineDeformationGenerator_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SplineDeformationGenerator_/src/main/java/SplineDeformationGenerator/SplineDeformationGenerator_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/SplineDeformationGenerator_/src/main/java/SplineDeformationGenerator/SplineDeformationGenerator_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building plugins/IJ_Robot.jar <- src-plugins/IJ_Robot/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/IJ_Robot
Building plugins/Skeletonize3D_.jar <- src-plugins/Skeletonize3D_/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Skeletonize3D_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Skeletonize3D_/src/main/java/Skeletonize3D_/Skeletonize3D_.java:39: warning: unmappable character for encoding ASCII
* Image Processing, 56(6):462???478, 1994." Based on the ITK version from
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Skeletonize3D_/src/main/java/Skeletonize3D_/Skeletonize3D_.java:39: warning: unmappable character for encoding ASCII
* Image Processing, 56(6):462???478, 1994." Based on the ITK version from
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Skeletonize3D_/src/main/java/Skeletonize3D_/Skeletonize3D_.java:39: warning: unmappable character for encoding ASCII
* Image Processing, 56(6):462???478, 1994." Based on the ITK version from
^
3 warnings
Building plugins/Colour_Deconvolution.jar <- src-plugins/Colour_De...
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colour_Deconvolution
Building plugins/Interactive_3D_Surface_Plot.jar <- src-plugins/In...
Compiling 12 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:297: warning: unmappable character for encoding ASCII
// IJ.run("Set Scale...", "distance=1.001 known=100 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:297: warning: unmappable character for encoding ASCII
// IJ.run("Set Scale...", "distance=1.001 known=100 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:298: warning: unmappable character for encoding ASCII
// //IJ.run("Set Scale...", "distance=2.2 known=5 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:298: warning: unmappable character for encoding ASCII
// //IJ.run("Set Scale...", "distance=2.2 known=5 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:299: warning: unmappable character for encoding ASCII
IJ.run("Set Scale...", "distance=12 known=100 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:299: warning: unmappable character for encoding ASCII
IJ.run("Set Scale...", "distance=12 known=100 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:300: warning: unmappable character for encoding ASCII
// //IJ.run("Set Scale...", "distance=30 known=0.5 pixel=1 unit=??m");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java:300: warning: unmappable character for encoding ASCII
// //IJ.run("Set Scale...", "distance=30 known=0.5 pixel=1 unit=??m");
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
8 warnings
Building plugins/Thread_Killer.jar <- src-plugins/Thread_Killer/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Thread_Killer
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Thread_Killer/src/main/java/Thread_Killer.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Building plugins/Lasso_and_Blow_Tool.jar <- src-plugins/Lasso_and_...
Compiling 5 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Lasso_and_Blow_Tool
Building ImageJ <- plugins/Fiji_Updater.jar jars/ij.jar jars/jsch.jar
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 353 100 353 0 0 59749 0 --:--:-- --:--:-- --:--:-- 114k
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 359 100 359 0 0 77022 0 --:--:-- --:--:-- --:--:-- 175k
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 13136 100 13136 0 0 2379k 0 --:--:-- --:--:-- --:--:-- 4276k
Fixing jars/ij-launcher.jar...
Processing 7 file(s) from jars/ij-launcher.jar to jars/ij-launcher.jar.new.
Transformed 3 file(s).
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 29066 100 29066 0 0 4434k 0 --:--:-- --:--:-- --:--:-- 7096k
Building plugins/Graph_Cut.jar <- src-plugins/Graph_Cut/
Compiling 4 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Graph_Cut
Building plugins/bUnwarpJ_.jar <- src-plugins/bUnwarpJ_/
Compiling 18 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/bUnwarpJ_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/bUnwarpJ_/src/main/java/math/BSpline.java:35: warning: unmappable character for encoding ASCII
* Ref: A. Mu??oz-Barrutia, T. Blu, M. Unser, "Least-Squares Image Resizing
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/bUnwarpJ_/src/main/java/math/BSpline.java:35: warning: unmappable character for encoding ASCII
* Ref: A. Mu??oz-Barrutia, T. Blu, M. Unser, "Least-Squares Image Resizing
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/BSplineModel.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 warnings
Building jars/wavelets.jar <- src-plugins/wavelets/
Compiling 5 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/wavelets
Building plugins/Anisotropic_Diffusion_2D.jar <- src-plugins/Aniso...
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Anisotropic_Diffusion_2D
Building plugins/IO_.jar <- src-plugins/IO_/
Compiling 47 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/IO_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/IO_/src/main/java/io/Nrrd_Writer.java:217: warning: unmappable character for encoding ASCII
if(units.equals("??m")) units="microns";
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/IO_/src/main/java/io/Nrrd_Writer.java:217: warning: unmappable character for encoding ASCII
if(units.equals("??m")) units="microns";
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/IO_/src/main/java/io/DM3_Reader.java:111: warning: unmappable character for encoding ASCII
// - Fixed a bug which prevented units other than ??m or nm being passed to
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/IO_/src/main/java/io/DM3_Reader.java:111: warning: unmappable character for encoding ASCII
// - Fixed a bug which prevented units other than ??m or nm being passed to
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/IO_/src/main/java/io/DM3_Reader.java:644: warning: unmappable character for encoding ASCII
// also will ??m get corrupted? may be necessary to do a unicode comparison
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/IO_/src/main/java/io/DM3_Reader.java:644: warning: unmappable character for encoding ASCII
// also will ??m get corrupted? may be necessary to do a unicode comparison
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/IO_/src/main/java/io/DM3_Reader.java:651: warning: unmappable character for encoding ASCII
if (unit.equals("??m")){
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/IO_/src/main/java/io/DM3_Reader.java:651: warning: unmappable character for encoding ASCII
if (unit.equals("??m")){
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
8 warnings
Building plugins/Simple_Neurite_Tracer.jar <- src-plugins/Simple_N...
Warning: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/jars/jcommon.jar overrides jfree>jcommon
Warning: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/jars/junit.jar overrides junit>junit
Compiling 6 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/AnalyzeSkeleton_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 117 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB_/src/main/java/Biorad_Writer.java:85: warning: unmappable character for encoding ASCII
if(fi.unit.equals("??m") || fi.unit.equals("um")) fi.unit="microns";
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB_/src/main/java/Biorad_Writer.java:85: warning: unmappable character for encoding ASCII
if(fi.unit.equals("??m") || fi.unit.equals("um")) fi.unit="microns";
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 warnings
Compiling 57 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Simple_Neurite_Tracer
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Building plugins/register_virtual_stack_slices.jar <- src-plugins/...
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/register_virtual_stack_slices
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building plugins/TurboReg_.jar <- src-plugins/TurboReg_/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/TurboReg_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/TurboReg_/src/main/java/TurboReg_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Building plugins/Statistical_Region_Merging.jar <- src-plugins/Sta...
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Statistical_Region_Merging
Building plugins/Colocalisation_Analysis.jar <- src-plugins/Coloca...
Compiling 42 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:171: warning: unmappable character for encoding ASCII
gd2.addNumericField("Pixel Size (??m)", pixelSize,3);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:171: warning: unmappable character for encoding ASCII
gd2.addNumericField("Pixel Size (??m)", pixelSize,3);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:660: warning: unmappable character for encoding ASCII
+"\tR(rand) mean??sd"
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:660: warning: unmappable character for encoding ASCII
+"\tR(rand) mean??sd"
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:668: warning: unmappable character for encoding ASCII
if (Costes||rBlocks) strPSF = df3.format(psf*pixelSize*2)+ " ??m ("+df0.format(psf*2)+" pix.)" ;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:668: warning: unmappable character for encoding ASCII
if (Costes||rBlocks) strPSF = df3.format(psf*pixelSize*2)+ " ??m ("+df0.format(psf*2)+" pix.)" ;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:672: warning: unmappable character for encoding ASCII
"\t" +df3.format(r2mean) + "??"+ df3.format(r2sd)+
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:672: warning: unmappable character for encoding ASCII
"\t" +df3.format(r2mean) + "??"+ df3.format(r2sd)+
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:695: warning: unmappable character for encoding ASCII
//[i.e. E(ch1if ch2>0) ?? E(ch1total)]
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:695: warning: unmappable character for encoding ASCII
//[i.e. E(ch1if ch2>0) ?? E(ch1total)]
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:702: warning: unmappable character for encoding ASCII
//[i.e. E(ch1 if ch2>ch2threshold) ?? (Ech1total)]
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:702: warning: unmappable character for encoding ASCII
//[i.e. E(ch1 if ch2>ch2threshold) ?? (Ech1total)]
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:707: warning: unmappable character for encoding ASCII
//[i.e. E(ch1>ch1threshold) ?? E(ch1total)]
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:707: warning: unmappable character for encoding ASCII
//[i.e. E(ch1>ch1threshold) ?? E(ch1total)]
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
14 warnings
Building plugins/Analyze_Reader_Writer.jar <- src-plugins/Analyze_...
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Analyze_Reader_Writer
Building plugins/MTrack2_.jar <- src-plugins/MTrack2_/
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/MTrack2_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/MTrack2_/src/main/java/MTrack2_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/MTrack2_/src/main/java/MTrack2_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building plugins/Stitching_.jar <- src-plugins/Stitching_/
java.lang.NullPointerException
at fiji.build.minimaven.BuildEnvironment.compareVersion(BuildEnvironment.java:430)
at fiji.build.minimaven.POM.findPOM(POM.java:519)
at fiji.build.minimaven.POM.getDependencies(POM.java:392)
at fiji.build.minimaven.POM.getDependencies(POM.java:414)
at fiji.build.minimaven.POM.getDependencies(POM.java:414)
at fiji.build.minimaven.POM.getDependencies(POM.java:414)
at fiji.build.minimaven.POM.getDependencies(POM.java:414)
at fiji.build.minimaven.POM.getDependencies(POM.java:414)
at fiji.build.minimaven.POM.getDependencies(POM.java:380)
at fiji.build.minimaven.POM.downloadDependencies(POM.java:93)
at fiji.build.SubFake.action(SubFake.java:175)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:256)
at fiji.build.Fake.main(Fake.java:56)
null
in rule plugins/Stitching_.jar <- src-plugins/Stitching_/
in rule all <- ImageJ fiji jars/ij.jar plugins/loci_tools.jar jar...
Build step 'Execute shell' marked build as failure
More information about the ImageJ-builds
mailing list