[ImageJ-builds] Build failed in Jenkins: fiji-core #413

Sun Jul 8 20:32:49 CDT 2012

See <https://qa.nest-initiative.org/job/fiji-core/413/changes>

Changes:

[johannes.schindelin] Fiji Build: never ask MiniMaven for a dependency without groupId or version

[johannes.schindelin] MiniMaven: get rid of all that groupId == null, version == null handling

[johannes.schindelin] MiniMaven: do not accept too-old versions from multi-projects

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Warning: <https://qa.nest-initiative.org/job/fiji-core/ws/jars/mpicbg.jar> overrides mpicbg>mpicbg

Parsing /home/jenkins/.m2/repository/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.pom
Compiling 18 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/IODialog.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/PointAction.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/Mask.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/MainDialog.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/PointHandler.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/MiscTools.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/BSplineModel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/CumulativeQueue.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/Credits.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/ClearAll.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/ProgressBar.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/Transformation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/Param.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/bUnwarpJ_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/MathTools.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/FinalAction.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/PointToolbar.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/math/BSpline.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/BSplineModel.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/mpicbg.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Transform_Virtual_Stack_MT.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/mpicbg.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/View5D_.jar <- src-plugins/V...
Building (fiji.build.SubFake) plugins/View5D_.jar <- src-plugins/V...
Parsing src-plugins/View5D_/pom.xml
Compiling 37 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/AnElement.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/My3DData.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/PositionLabel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/View5D_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/MarkerLists.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/ByteElement.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/APoint.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/ImageCanvas.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/TaggedDouble.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/TaggedCheck.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/ROI.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/PlotInfo.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/FloatElement.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/OneElement.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/PolyROI.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/DoubleElement.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/View5D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/ANGenericDialog.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/ZeroElement.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/PlaneROI.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/ShortElement.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/ComplexElement.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/MarkerList.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/IntegerElement.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/RectROI.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/AlternateViewer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/AGenericDialog.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/TaggedMessage.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/TaggedChoice.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/TaggedComponent.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/PixelDisplay.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/ASlice.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/TaggedText.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/MyMenuProcessor.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/ImgPanel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/ImageErr.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/Bundle.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/View5D_/src/main/java/view5d/ImageCanvas.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Checking prerequisites of (fiji.build.SubFake) plugins/Siox_Segmentation.jar <- src...
Building (fiji.build.SubFake) plugins/Siox_Segmentation.jar <- src...
Parsing src-plugins/Siox_Segmentation/pom.xml
Compiling 19 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/siox/SegmentationInfo.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/siox/SegmentationGUI.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/siox/RoiOverlay.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/siox/ImageOverlay.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/siox/Siox_Segmentation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/siox/ControlJPanel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/siox/Load_Segmentation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ScrollDisplay.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ExtensionFileFilter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/JRuler.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/CursorFactory.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/Main.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ControlJPanel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ImagePane.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/ColorSignature.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/SioxSegmentator.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/util/IntArrayList.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/util/Utils.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/util/IntHashMap.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ControlJPanel.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/TrakEM2_.jar <- jars/ij.jar ...
Checking prerequisites of (fiji.build.SubFake) jars/imglib.jar <- jars/mpicbg.jar m...
Checking prerequisites of (fiji.build.SubFake) plugins/Fiji_Plugins.jar <- src-plug...
Building (fiji.build.SubFake) plugins/Fiji_Plugins.jar <- src-plug...
Parsing src-plugins/Fiji_Plugins/pom.xml
Compiling 22 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/classes,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/UrnModel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/MersenneTwisterFast.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/OrthogonalLineFunction.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/GammaFunction.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/ConjugateDirectionSearch.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/Binomial.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/MultivariateMinimum.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/MFWithGradient.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/NumericalDerivative.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/BoundsCheckedFunction.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/DifferentialEvolution.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/ErrorFunction.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/OrthogonalSearch.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/StochasticOSearch.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/GeneralizedDEOptimizer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/MathUtils.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/UnivariateFunction.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/MultivariateFunction.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/LineFunction.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/UnivariateMinimum.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/ConjugateGradientSearch.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/src/main/java/pal/math/MachineAccuracy.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/classes>
Compiling 190 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib>
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<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/FindConnectedRegions.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/CombinationGenerator.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/WindowHelpers.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/FileAndChannel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/StupidLog.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/LabelFilenameFilter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/Arrow.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/ArrowDisplayer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/ModelessQuestions.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/ImageCalculatorRevised.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/opencsv/CSVReader.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/opencsv/CSVWriter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/CMTKTransformation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/FileCreation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/Bresenham3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/RGBToLuminance.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/Penalty.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/util/Limits.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/src/main/java/client/ArchiveClient.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 32 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Rounded_Rectangle.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Select_Bounding_Box.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Binary_to_Point_Selection.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/SEDT.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/EDT.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/AreaCalculations.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/denoise/ROF_Denoise.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Hyperstack_rearranger.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Radial_Reslice.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/CompositeConverter2.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Linear_Gradient.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Radial_Gradient.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/help/Context_Help.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta_Clipboard.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NNearestNeighborSearch.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NearestNeighborSearch.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/KDTree.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Fiji_Uploader.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Leaf.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/NonLeaf.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/SimpleNode.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Node.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/TestKDTree.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Circle_Fitter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Recent_Commands.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/CurrentSlice.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/DistanceComparator.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/fiji/util/RadiusNeighborSearch.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.ExecuteProgram) jars/jai_core.jar <- 
jars/jai_core.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Building (fiji.build.ExecuteProgram) jars/jai_core.jar <- 
jars/jai_core.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Checking prerequisites of (fiji.build.ExecuteProgram) jars/jcommon.jar <- 
jars/jcommon.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Building (fiji.build.ExecuteProgram) jars/jcommon.jar <- 
jars/jcommon.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Checking prerequisites of (fiji.build.ExecuteProgram) jars/jfreechart.jar <- 
jars/jfreechart.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Building (fiji.build.ExecuteProgram) jars/jfreechart.jar <- 
jars/jfreechart.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Checking prerequisites of (fiji.build.SubFake) plugins/bUnwarpJ_.jar <- src-plugins...
Building (fiji.build.SubFake) plugins/bUnwarpJ_.jar <- src-plugins...
Parsing src-plugins/bUnwarpJ_/pom.xml
Checking prerequisites of (fiji.build.SubFake) plugins/3D_Viewer.jar <- src-plugins...
Building (fiji.build.SubFake) plugins/3D_Viewer.jar <- src-plugins...
Parsing src-plugins/3D_Viewer/pom.xml
Parsing /home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.pom
Parsing /home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.pom
Parsing /home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.pom
Compiling 121 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar, -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/voltex/Mask.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/voltex/VoltexGroup.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/voltex/VoltexVolume.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/voltex/AppearanceCreator.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/voltex/GeometryCreator.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/voltex/VolumeRenderer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/process3d/Smooth_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/orthoslice/Orthoslice.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/orthoslice/OrthoGroup.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/orthoslice/MultiOrthoslice.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/orthoslice/MultiOrthoGroup.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/surfaceplot/SurfacePlot.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/surfaceplot/SurfacePlotGroup.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/ij3d/DefaultUniverse.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/ij3d/AxisConstants.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/src/main/java/ij3d/UniverseSynchronizer.java,> 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using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) jars/VIB-lib.jar <- jars/ij.jar jars...
Checking prerequisites of (fiji.build.ExecuteProgram) jars/jzlib.jar <- 
jars/jzlib.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Building (fiji.build.ExecuteProgram) jars/jzlib.jar <- 
jars/jzlib.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Checking prerequisites of (fiji.build.SubFake) jars/fiji-lib.jar <- src-plugins/fij...
Parsing src-plugins/fiji-lib/pom.xml
Checking prerequisites of (fiji.build.SubFake) jars/pal-optimization.jar <- src-plu...
Parsing src-plugins/pal-optimization/pom.xml
Parsing src-plugins/VIB-lib/pom.xml
Checking prerequisites of (fiji.build.ExecuteProgram) jars/postgresql.jar <- 
jars/postgresql.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Building (fiji.build.ExecuteProgram) jars/postgresql.jar <- 
jars/postgresql.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Checking prerequisites of (fiji.build.SubFake) plugins/VIB_.jar <- src-plugins/VIB_/
Building (fiji.build.SubFake) plugins/VIB_.jar <- src-plugins/VIB_/
Parsing src-plugins/VIB_/pom.xml
Compiling 117 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_>
[-source, 1.5, -target, 1.5, -classpath, 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<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/features/Hessian_CP_Measures.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/features/Sigma_Palette.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/features/TestComputeCurvatures_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/features/Tubeness_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/features/Surfaceness_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/MC_Test.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Bilateral_Filter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/ShowAmiraSurface_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Implicit_Interpolate_Binary.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Menu_Font.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Rohlfing_SBA.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/landmarks/Affine_From_Landmarks.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/landmarks/Bookstein_From_Landmarks.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/landmarks/Name_Points.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/landmarks/Rigid_From_Landmarks.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Two_Point_Correlation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/textureByRef/Volume_Editor.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/textureByRef/Texture_By_Ref_col.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/textureByRef/Texture_By_Ref.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Biorad_Writer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/VIB_Protocol.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/stacks/Three_Pane_Crop.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/stacks/Unpack_To_PNG.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/stacks/ThreePanes_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/stacks/ThreePaneContainer_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/ROIBrush_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/oldsegmenters/LabelBrush_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/oldsegmenters/LabelThresholder_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/oldsegmenters/Segmentator_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/oldsegmenters/Segmenter_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/oldsegmenters/LabelInterpolator_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/AmiraTableWriter_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/marchingcubes/ExportMesh_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/AmiraMeshWriter_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Replace_Value.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/ROI_3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/KD_Cartoon.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/SegmentationViewer_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/Points_Dialog.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/LocalRigidRegistration_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/EditAmiraParameters_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/ElasticTransform_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/TissueStatistics_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/edge/Dirichlet_Edge.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/EdgeDetectors_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/Resample_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/Show_centers.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/BatchLog_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/Average_Images.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/Raster_Rigid.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/Deformable_Registration.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/Fit_Sphere.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/IDT_Interpolate_Binary.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/Local_Threshold.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/Extract_Surface.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/RigidRegistration_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/oldregistration/PCA_Registration.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/Relabel_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/AugmentedLandmarkWarp_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/MaxEntQuantization_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/Center_Transformation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/DiffusionInterpol2_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/vib/AverageBrain_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Compute_Curvatures.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/video/Edit_Video.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Segmentation_Editor.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/CollectGarbage_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/CropEditor_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Triangle_Algorithm.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/leica/Leica_SP_Writer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/leica/Leica_SP_Reader.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/util/Overlay_Registered.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/util/Quantile_Based_Normalization.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/util/Find_Connected_Regions.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/util/Histogram_2D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/util/Meshes_From_Label_File.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/util/Count_Labels.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/util/Exposure_Blend_Two_Stacks.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/util/Just_Certain_Labels.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/util/Mask_Of_Nearby_Points.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/util/Average_Torsten_Results.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/util/RGB_to_Luminance.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/AmiraMeshReader_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Average_Color.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/RGB_to_CIELAB.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/FindIt_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Show_Label_Centers.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Despeckle_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Biorad_Reader.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Moving_Least_Squares.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/Test_Java3D.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) jars/VectorString.jar <- jars/ij.jar...
Building (fiji.build.SubFake) jars/VectorString.jar <- jars/ij.jar...
Checking prerequisites of (fiji.build.SubFake) plugins/Simple_Neurite_Tracer.jar <-...
Building (fiji.build.SubFake) plugins/Simple_Neurite_Tracer.jar <-...
Parsing src-plugins/Simple_Neurite_Tracer/pom.xml
Parsing /home/jenkins/.m2/repository/org/apache/commons/commons-math/3.0-SNAPSHOT/commons-math-3.0-20120702.214056-1.pom
Trying to download http://dev.loci.wisc.edu/maven2/releases/org/apache/commons/commons-math/3.0-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/org/apache/commons/commons-math/3.0-SNAPSHOT/maven-metadata.xml.sha1
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at java.net.URL.openStream(URL.java:1010)
	at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:399)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:296)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:254)
	at fiji.build.minimaven.POM.download(POM.java:105)
	at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:624)
	at fiji.build.minimaven.POM.getDependencies(POM.java:405)
	at fiji.build.minimaven.POM.getDependencies(POM.java:380)
	at fiji.build.minimaven.POM.downloadDependencies(POM.java:93)
	at fiji.build.SubFake.action(SubFake.java:175)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:256)
	at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/org/apache/commons/commons-math/3.0-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/org/apache/commons/commons-math/3.0-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of commons-math
Warning: <https://qa.nest-initiative.org/job/fiji-core/ws/jars/jcommon.jar> overrides jfree>jcommon

Compiling 6 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Graph.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Vertex.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Point.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Edge.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/SkeletonResult.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Skeletonize3D_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Skeletonize3D_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Skeletonize3D_/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Skeletonize3D_/src/main/java/Skeletonize3D_/Skeletonize3D_.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Skeletonize3D_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Compiling 57 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer>
[-source, 1.5, -target, 1.5, -classpath, 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-d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PointInImage.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/ShollAnalysisDialog.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathWindow.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Albert_Test.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/ClarifyingKeyListener.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/CreateTracingVolume_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathColorsCanvas.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/FillerProgressCallback.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/NeuriteTracerResultsDialog.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/NormalPlaneCanvas.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SearchProgressCallback.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/TracerCanvas.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/InteractiveTracerCanvas.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Test2DTracing.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/TubularGeodesicsTracer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/QueueJumpingKeyListener.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/FillWindow.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/TraceLoaderListener.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/EigenResultsDouble.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SinglePathsGraph.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Simple_Neurite_Tracer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Connectivity.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/AnalyzeTracings_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathFitter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SearchNode.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SNTListener.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathDownsampler.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SearchInterface.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/AutoTracerCanvas.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/CMTKInversePathTransformer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/NewAnalyzeTracings_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SWCImportOptionsDialog.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SearchThread.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SWCPoint.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Test_Single_Voxel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathAndFillManager.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/TracerThread.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathAndFillListener.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Path.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/GraphNode.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PointSelectionBehavior.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/EigenResultsFloat.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/NearPoint.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathResult.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/AutoPoint.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Fill.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SimpleNeuriteTracer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SwingSafeResult.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/MultiTaskProgress.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Auto_Tracer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/FillerThread.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Test3DTracing.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Load_Auto_Traces.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathTransformer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/FittingProgress.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/AutoSearchThread.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SNTEvent.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Skeletonize3D_/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/batik.jar>:/home/jenkins/.m2/repository/org/apache/commons/commons-math/3.0-SNAPSHOT/commons-math-3.0-20120702.214056-1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jcommon.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jfreechart.jar>:/home/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Checking prerequisites of (fiji.build.SubFake) plugins/level_sets.jar <- src-plugin...
Building (fiji.build.SubFake) plugins/level_sets.jar <- src-plugin...
Parsing src-plugins/level_sets/pom.xml
Compiling 35 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/GeodesicActiveContour.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/LevelSetFactory.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredDoubleArray3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/BandElement.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/ActiveContours.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/SparseFieldLevelSet.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredObjectArray3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/Coordinate.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DenseFieldLevelSet.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredByteArray3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/FastMarching.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredIntArray3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/FastMarchingBandElement.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredArray3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/StagedAlgorithm.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/BandElementCache.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/LevelSetImplementation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/ij/ImageContainer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/ij/LevelSet.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/ij/ImageProgressContainer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/ij/StateContainer.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/UnsetPixel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/GreyValueErosion.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/SimpleEdgeDetect.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Dilatation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Filter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/GreyScaleFilter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/SUSAN.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Canny.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Erosion.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/ConvolutionFilter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Sobel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/MorphologicalOperator.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/BufferedImageBuilder.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/src/main/java/levelsets/filter/MedianFilter.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) jars/imglib-algorithms.jar <- jars/J...
Checking prerequisites of (fiji.build.ExecuteProgram) jars/edu_mines_jtk.jar <- 
jars/edu_mines_jtk.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Building (fiji.build.ExecuteProgram) jars/edu_mines_jtk.jar <- 
jars/edu_mines_jtk.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Checking prerequisites of (fiji.build.ExecuteProgram) jars/jai_codec.jar <- 
jars/jai_codec.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Building (fiji.build.ExecuteProgram) jars/jai_codec.jar <- 
jars/jai_codec.jar is not up-to-date because <https://qa.nest-initiative.org/job/fiji-core/ws/jars/fake.jar> is newer: Mon Jul 09 03:32:25 CEST 2012 < Mon Jul 09 03:32:28 CEST 2012
Checking prerequisites of (fiji.build.SubFake) jars/imglib-ij.jar <- jars/ij.jar ja...
Checking prerequisites of (fiji.build.SubFake) plugins/mpicbg_.jar <- jars/ij.jar j...
Building (fiji.build.SubFake) plugins/mpicbg_.jar <- jars/ij.jar j...
Building (fiji.build.SubFake) plugins/TrakEM2_.jar <- jars/ij.jar ...
plugins/TrakEM2_.jar does not exist yet
Checking prerequisites of (fiji.build.SubFake) plugins/Trainable_Segmentation.jar <...
Building (fiji.build.SubFake) plugins/Trainable_Segmentation.jar <...
Parsing src-plugins/Trainable_Segmentation/pom.xml
Parsing /home/jenkins/.m2/repository/net/imagej/Image_5D/1.2.5/Image_5D-1.2.5.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-SNAPSHOT/imglib2-algorithms-2.0.0-20120703.224255-399.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/pom-imglib2-algorithms/2.0.0-SNAPSHOT/pom-imglib2-algorithms-2.0.0-20120703.224255-399.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/pom-imglib2/2.0.0-SNAPSHOT/pom-imglib2-2.0.0-20120703.224255-404.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-SNAPSHOT/imglib2-2.0.0-20120703.224255-399.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-SNAPSHOT/imglib2-ij-2.0.0-20120703.224255-398.pom
Parsing /home/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.pom
Parsing /home/jenkins/.m2/repository/org/sonatype/oss/oss-parent/7/oss-parent-7.pom
Parsing /home/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.pom
Parsing /home/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.pom
Parsing /home/jenkins/.m2/repository/loci/loci_tools/4.4-SNAPSHOT/loci_tools-4.4-20120708.201339-122.pom
Parsing /home/jenkins/.m2/repository/loci/pom-scifio/4.4-SNAPSHOT/pom-scifio-4.4-20120628.152121-51.pom
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/loci_tools/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/loci_tools/4.4-SNAPSHOT/maven-metadata.xml.sha1
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at java.net.URL.openStream(URL.java:1010)
	at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:399)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:296)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:254)
	at fiji.build.minimaven.POM.download(POM.java:105)
	at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:624)
	at fiji.build.minimaven.POM.getDependencies(POM.java:405)
	at fiji.build.minimaven.POM.getDependencies(POM.java:414)
	at fiji.build.minimaven.POM.getDependencies(POM.java:380)
	at fiji.build.minimaven.POM.downloadDependencies(POM.java:93)
	at fiji.build.SubFake.action(SubFake.java:175)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:256)
	at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci_tools/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci_tools/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of loci_tools
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci_tools/4.4-SNAPSHOT/loci_tools-4.4-20120708.201339-122.pom.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci_tools/4.4-SNAPSHOT/loci_tools-4.4-20120708.201339-122.pom
Parsing /home/jenkins/.m2/repository/loci/loci_plugins/4.4-SNAPSHOT/loci_plugins-4.4-20120628.152337-121.pom
Parsing /home/jenkins/.m2/repository/loci/bio-formats/4.4-SNAPSHOT/bio-formats-4.4-20120628.152312-122.pom
Parsing /home/jenkins/.m2/repository/loci/loci-common/4.4-SNAPSHOT/loci-common-4.4-20120628.152203-132.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-parent/1.5.10/slf4j-parent-1.5.10.pom
Parsing /home/jenkins/.m2/repository/log4j/log4j/1.2.14/log4j-1.2.14.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-log4j12/1.5.10/slf4j-log4j12-1.5.10.pom
java.lang.NullPointerException
	at fiji.build.minimaven.BuildEnvironment.compareVersion(BuildEnvironment.java:430)
	at fiji.build.minimaven.POM.findPOM(POM.java:519)
	at fiji.build.minimaven.POM.getDependencies(POM.java:392)
	at fiji.build.minimaven.POM.getDependencies(POM.java:414)
	at fiji.build.minimaven.POM.getDependencies(POM.java:414)
	at fiji.build.minimaven.POM.getDependencies(POM.java:414)
	at fiji.build.minimaven.POM.getDependencies(POM.java:414)
	at fiji.build.minimaven.POM.getDependencies(POM.java:414)
	at fiji.build.minimaven.POM.getDependencies(POM.java:414)
	at fiji.build.minimaven.POM.getDependencies(POM.java:380)
	at fiji.build.minimaven.POM.downloadDependencies(POM.java:93)
	at fiji.build.SubFake.action(SubFake.java:175)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:256)
	at fiji.build.Fake.main(Fake.java:56)
null
	in rule (fiji.build.SubFake) plugins/Trainable_Segmentation.jar <...
	in rule (fiji.build.All) all <- ImageJ fiji jars/ij.jar plugins/l...
Build step 'Execute shell' marked build as failure
Archiving artifacts