[ImageJ-builds] Build failed in Jenkins: fiji-core #409

Jenkins Daemon jenkins at qa.nest-initiative.org
Fri Jul 6 21:34:27 CDT 2012 

See <https://qa.nest-initiative.org/job/fiji-core/409/changes>

Changes:

[johannes.schindelin] MiniMaven: .git may be a file

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Skipping artifact tools (for ij): not found
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Parsing /home/jenkins/.m2/repository/loci/pom-scifio/4.4-SNAPSHOT/pom-scifio-4.4-20120628.152121-51.pom
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/loci_tools/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/loci_tools/4.4-SNAPSHOT/maven-metadata.xml.sha1
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at java.net.URL.openStream(URL.java:1010)
	at fiji.build.MiniMaven.download(MiniMaven.java:1399)
	at fiji.build.MiniMaven.downloadAndVerify(MiniMaven.java:1220)
	at fiji.build.MiniMaven.downloadAndVerify(MiniMaven.java:1178)
	at fiji.build.MiniMaven$POM.download(MiniMaven.java:388)
	at fiji.build.MiniMaven$POM.maybeDownloadAutomatically(MiniMaven.java:950)
	at fiji.build.MiniMaven$POM.getDependencies(MiniMaven.java:676)
	at fiji.build.MiniMaven$POM.getDependencies(MiniMaven.java:651)
	at fiji.build.MiniMaven$POM.downloadDependencies(MiniMaven.java:372)
	at fiji.build.SubFake.action(SubFake.java:168)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:267)
	at fiji.build.Fake.main(Fake.java:55)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci_tools/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci_tools/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of loci_tools
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci_tools/4.4-SNAPSHOT/loci_tools-4.4-20120704.082611-121.pom.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci_tools/4.4-SNAPSHOT/loci_tools-4.4-20120704.082611-121.pom
Parsing /home/jenkins/.m2/repository/loci/loci_plugins/4.4-SNAPSHOT/loci_plugins-4.4-20120628.152337-121.pom
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Parsing /home/jenkins/.m2/repository/loci/loci-common/4.4-SNAPSHOT/loci-common-4.4-20120628.152203-132.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-parent/1.5.10/slf4j-parent-1.5.10.pom
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Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-log4j12/1.5.10/slf4j-log4j12-1.5.10.pom
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Parsing /home/jenkins/.m2/repository/loci/metakit/4.4-SNAPSHOT/metakit-4.4-20120628.152303-132.pom
Parsing /home/jenkins/.m2/repository/loci/ome-xml/4.4-SNAPSHOT/ome-xml-4.4-20120628.152229-132.pom
Parsing /home/jenkins/.m2/repository/loci/poi-loci/4.4-SNAPSHOT/poi-loci-4.4-20120628.152218-132.pom
Parsing /home/jenkins/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.pom
Parsing /home/jenkins/.m2/repository/org/apache/commons/commons-parent/5/commons-parent-5.pom
Parsing /home/jenkins/.m2/repository/org/apache/apache/4/apache-4.pom
Parsing /home/jenkins/.m2/repository/loci/scifio/4.4-SNAPSHOT/scifio-4.4-20120628.152247-89.pom
Parsing /home/jenkins/.m2/repository/loci/jai_imageio/4.4-SNAPSHOT/jai_imageio-4.4-20120628.152145-132.pom
Parsing /home/jenkins/.m2/repository/loci/lwf-stubs/4.4-SNAPSHOT/lwf-stubs-4.4-20120628.152236-132.pom
Parsing /home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.pom
Parsing /home/jenkins/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.pom
Parsing /home/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.pom
Parsing /home/jenkins/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.pom
Parsing /home/jenkins/.m2/repository/essi-unidata/netcdf-java/4.0.41/netcdf-java-4.0.41.pom
Compiling 9 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/src/main/java/Jama/QRDecomposition.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/src/main/java/Jama/EigenvalueDecomposition.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/src/main/java/Jama/test/TestMatrix.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/src/main/java/Jama/examples/MagicSquareExample.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/src/main/java/Jama/LUDecomposition.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/src/main/java/Jama/Matrix.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/src/main/java/Jama/SingularValueDecomposition.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/src/main/java/Jama/util/Maths.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/src/main/java/Jama/CholeskyDecomposition.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/src/main/java/Jama/Matrix.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 26 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/ij/gui/ShapeRoiHelper.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/AbstractTool.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/AbstractTrackingTool.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/ToolWithOptions.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/SliceListener.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/ToolToggleListener.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/SliceObserver.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/Debug.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/JNI.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/ArrayBase.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/SplitString.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/TicToc.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/IntArray.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/JFrameCommandFinder.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/GenericDialogPlus.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/CommandFinderBase.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/OverlayedImageCanvas.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/JImagePanel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/AbstractAnnotation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/DoubleArray.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/FloatArray.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/Levenshtein.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/MenuItemHelper.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/MenuItemDiverter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/debugging/Object_Inspector.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/statistics/RoiStatistics.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/JFrameCommandFinder.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 22 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization>
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using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/classes>
Compiling 190 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib>
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Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
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Compiling 32 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins>
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Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
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Compiling 59 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_>
[-source, 1.5, -target, 1.5, -classpath, 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-d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/Stitch_Many_Images.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/Stitch_Image_Grid_Sequence.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/Quicksortable.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/ImageInformation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/CommonFunctions.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/FloatArray2D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/Point3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/PointMatch.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/PaintInvertibleCoordinateTransformThread.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/NotEnoughDataPointsException.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/InvertibleModel.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/InvertibleCoordinateTransform.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/NoninvertibleModelException.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/TileConfiguration.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/Point.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/Model.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/ErrorStatistic.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/Tile.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/CoordinateTransform.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/TranslationModel2D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/model/TranslationModel3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/OverlapProperties.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/Point2D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/CrossCorrelationResult3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/FloatArray3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/FloatArray.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/GridLayout.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/stitching/CrossCorrelationResult2D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/Stitching_2D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/DeltaVision_Converter.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/Stitch_Image_Directory.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/Stitch_Image_Grid.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/Stitch_Image_Collection.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/Stitching_3D.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/GlobalOptimization.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/StitchingParameters.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/TileConfigurationStitching.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/AveragePixelFusion.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/PixelFusion.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/MedianPixelFusion.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/MinPixelFusion.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/BlendingPixelFusion.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/OverlayFusion.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/Fusion.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/ImageInterpolation.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/MaxPixelFusion.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/CollectionStitchingImgLib.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/ImageCollectionElement.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/TextFileAccess.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/Peak.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/PointMatchStitching.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/ComparePair.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/ImagePlusTimePoint.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/PairWiseStitchingImgLib.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/mpicbg/stitching/PairWiseStitchingResult.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/Stitch_Multiple_Series_File.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/plugin/Stitching_Pairwise.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/plugin/GridType.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/src/main/java/plugin/Stitching_Grid.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib/target/classes>:/home/jenkins/.m2/repository/loci/bio-formats/4.4-SNAPSHOT/bio-formats-4.4-20120628.152312-122.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/clibwrapper_jiio.jar>:/home/jenkins/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/loci/jai_imageio/4.4-SNAPSHOT/jai_imageio-4.4-20120628.152145-132.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/home/jenkins/.m2/repository/junit/junit/4.5/junit-4.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jzlib.jar>:/home/jenkins/.m2/repository/loci/loci-common/4.4-SNAPSHOT/loci-common-4.4-20120628.152203-132.jar:/home/jenkins/.m2/repository/loci/loci_plugins/4.4-SNAPSHOT/loci_plugins-4.4-20120628.152337-121.jar:/home/jenkins/.m2/repository/loci/loci_tools/4.4-SNAPSHOT/loci_tools-4.4-20120704.082611-121.jar:/home/jenkins/.m2/repository/log4j/log4j/1.2.14/log4j-1.2.14.jar:/home/jenkins/.m2/repository/loci/lwf-stubs/4.4-SNAPSHOT/lwf-stubs-4.4-20120628.152236-132.jar:/home/jenkins/.m2/repository/loci/mdbtools-java/4.4-SNAPSHOT/mdbtools-java-4.4-20120628.152154-132.jar:/home/jenkins/.m2/repository/loci/metakit/4.4-SNAPSHOT/metakit-4.4-20120628.152303-132.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20111128/mpicbg-20111128.jar:/home/jenkins/.m2/repository/essi-unidata/netcdf-java/4.0.41/netcdf-java-4.0.41.jar:/home/jenkins/.m2/repository/loci/ome-xml/4.4-SNAPSHOT/ome-xml-4.4-20120628.152229-132.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization/target/classes>:/home/jenkins/.m2/repository/loci/poi-loci/4.4-SNAPSHOT/poi-loci-4.4-20120628.152218-132.jar:/home/jenkins/.m2/repository/loci/scifio/4.4-SNAPSHOT/scifio-4.4-20120628.152247-89.jar:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) jars/javassist.jar <- modules/javass...
Building (fiji.build.SubFake) jars/javassist.jar <- modules/javass...
Checking prerequisites of (fiji.build.SubFake) plugins/Feature_Detection.jar <- src...
Building (fiji.build.SubFake) plugins/Feature_Detection.jar <- src...
Parsing src-plugins/Feature_Detection/pom.xml
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Feature_Detection>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Feature_Detection/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20111128/mpicbg-20111128.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Feature_Detection/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Feature_Detection/src/main/java/fiji/features/Frangi_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Feature_Detection/src/main/java/fiji/features/Curvatures_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Feature_Detection/src/main/java/fiji/features/MultiTaskProgress.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Feature_Detection/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jama/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20111128/mpicbg-20111128.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/Threshold_Colour.jar <- src-...
Building (fiji.build.SubFake) plugins/Threshold_Colour.jar <- src-...
Parsing src-plugins/Threshold_Colour/pom.xml
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Threshold_Colour>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Threshold_Colour/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Threshold_Colour/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Threshold_Colour/src/main/java/RGBtoLab_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Threshold_Colour/src/main/java/RGBtoYUV_.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Threshold_Colour/src/main/java/Threshold_Colour.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Threshold_Colour/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/Algorithm_Launcher.jar <- sr...
Building (fiji.build.SubFake) plugins/Algorithm_Launcher.jar <- sr...
Parsing src-plugins/Algorithm_Launcher/pom.xml
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20111128/mpicbg-20111128.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmLauncher.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmInfo.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmParser.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20120703.224255-404.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20111128/mpicbg-20111128.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmInfo.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) jars/jsch.jar <- modules/jsch/
Building (fiji.build.SubFake) jars/jsch.jar <- modules/jsch/
Checking prerequisites of (fiji.build.SubFake) jars/mij.jar <- src-plugins/mij/
Building (fiji.build.SubFake) jars/mij.jar <- src-plugins/mij/
Parsing src-plugins/mij/pom.xml
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/mij>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/mij/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/mij/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/mij/src/main/java/MIJ.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/mij/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Checking prerequisites of (fiji.build.SubFake) jars/commons-math.jar <- modules/com...
Building (fiji.build.SubFake) jars/commons-math.jar <- modules/com...
Checking prerequisites of (fiji.build.SubFake) plugins/blockmatching_.jar <- src-pl...
Building (fiji.build.SubFake) plugins/blockmatching_.jar <- src-pl...
Parsing src-plugins/blockmatching_/pom.xml
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-SNAPSHOT/imglib2-ij-2.0.0-20120703.224255-398.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/pom-imglib2/2.0.0-SNAPSHOT/pom-imglib2-2.0.0-20120703.224255-404.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-SNAPSHOT/imglib2-2.0.0-20120703.224255-399.pom
Parsing /home/jenkins/.m2/repository/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.pom
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/blockmatching_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/blockmatching_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-SNAPSHOT/imglib2-2.0.0-20120703.224255-399.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-SNAPSHOT/imglib2-ij-2.0.0-20120703.224255-398.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20111128/mpicbg-20111128.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/blockmatching_/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/blockmatching_/src/main/java/mpicbg/ij/plugin/BlockMatching_TestParameters.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/blockmatching_/src/main/java/mpicbg/ij/plugin/AbstractBlockMatching.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/blockmatching_/src/main/java/mpicbg/ij/plugin/BlockMatching_ExtractPoinRoi.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/blockmatching_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-SNAPSHOT/imglib2-2.0.0-20120703.224255-399.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-SNAPSHOT/imglib2-ij-2.0.0-20120703.224255-398.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20111128/mpicbg-20111128.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/blockmatching_/src/main/java/mpicbg/ij/plugin/BlockMatching_TestParameters.java>:211: cannot find symbol
symbol  : method colorCircle(ij.process.ColorProcessor)
location: class mpicbg.ij.util.Util
			mpicbg.ij.util.Util.colorCircle( ipScale );
			                   ^
1 error
Compile error
	at fiji.build.Fake.callJavac(Fake.java:556)
	at fiji.build.MiniMaven$POM.build(MiniMaven.java:504)
	at fiji.build.MiniMaven$POM.buildJar(MiniMaven.java:435)
	at fiji.build.SubFake.action(SubFake.java:169)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:267)
	at fiji.build.Fake.main(Fake.java:55)
Compile error
	at fiji.build.Fake.callJavac(Fake.java:556)
	at fiji.build.MiniMaven$POM.build(MiniMaven.java:504)
	at fiji.build.MiniMaven$POM.buildJar(MiniMaven.java:435)
	at fiji.build.SubFake.action(SubFake.java:169)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:267)
	at fiji.build.Fake.main(Fake.java:55)
Compile error
	in rule (fiji.build.SubFake) plugins/blockmatching_.jar <- src-pl...
	in rule (fiji.build.All) all <- ImageJ fiji jars/ij.jar plugins/l...
Build step 'Execute shell' marked build as failure
Archiving artifacts

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