[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #624

jenkins at imagej.net jenkins at imagej.net
Thu Jul 5 17:54:19 CDT 2012 

See <http://jenkins.imagej.net/job/Fiji-minimal/624/>

------------------------------------------
[...truncated 645 lines...]
plugins/Examples/Fiji_Logo_3D.js done
Czech Summer (plugins/Examples/blend_two_images.clj) 
plugins/Examples/blend_two_images.clj done
Czech Summer (plugins/Examples/The_Hue_Game.bsh) 
plugins/Examples/The_Hue_Game.bsh done
Czech Summer (plugins/Examples/Find_Dimension_of_Raw_Image.py) 
plugins/Examples/Find_Dimension_of_Raw_Image.py done
Czech Summer (plugins/Examples/Anaglyph_for_Red_Cyan_glasses.rb) 
plugins/Examples/Anaglyph_for_Red_Cyan_glasses.rb done
Czech Summer (plugins/Examples/Blobs_Demo_in_Ruby.rb) 
plugins/Examples/Blobs_Demo_in_Ruby.rb done
Czech Summer (plugins/Examples/Delayed_Snapshot.py) 
plugins/Examples/Delayed_Snapshot.py done
Czech Summer (plugins/Examples/Fiji_Cube.ijm) 
plugins/Examples/Fiji_Cube.ijm done
Czech Summer (plugins/Examples/Multithreaded_Image_Processing_in_Javascript....
plugins/Examples/Multithreaded_Image_Processing_in_Javascript.js done
Czech Summer (plugins/Examples/Plasma_Cloud.rb) 
plugins/Examples/Plasma_Cloud.rb done
Czech Summer (plugins/Examples/random_noise_example.clj) 
plugins/Examples/random_noise_example.clj done
Czech Summer (plugins/Examples/CoverMaker/Prepare_Cover_Maker_Database.py) 
plugins/Examples/CoverMaker/Prepare_Cover_Maker_Database.py done
Czech Summer (plugins/Examples/CoverMaker/Cover_Maker.py) 
plugins/Examples/CoverMaker/Cover_Maker.py done
Czech Summer (plugins/Examples/Delayed_Snapshot_Window.bsh) 
plugins/Examples/Delayed_Snapshot_Window.bsh done
Czech Summer (plugins/Examples/Edit_LUT_As_Text.py) 
plugins/Examples/Edit_LUT_As_Text.py done
Czech Summer (plugins/Examples/list_all_threads.py) 
plugins/Examples/list_all_threads.py done
Czech Summer (plugins/TopoJ_.jar) 
plugins/TopoJ_.jar done
Czech Summer (plugins/JRuby/imagej.rb) 
plugins/JRuby/imagej.rb done
Czech Summer (plugins/Javascript_.jar) 
plugins/Javascript_.jar done
Czech Summer (plugins/Macros/Polygon_.txt) 
plugins/Macros/Polygon_.txt done
Czech Summer (plugins/Macros/Bulls_Eye.txt) 
plugins/Macros/Bulls_Eye.txt done
Czech Summer (plugins/Macros/RGB_Histogram.txt) 
plugins/Macros/RGB_Histogram.txt done
Czech Summer (plugins/Macros/About_Plugin_Macros.txt) 
plugins/Macros/About_Plugin_Macros.txt done
Czech Summer (plugins/Macros/batch_convert_any_to_tif.txt) 
plugins/Macros/batch_convert_any_to_tif.txt done
Czech Summer (plugins/Scripts/File/Open_Samples/Spirals_.ijm) 
plugins/Scripts/File/Open_Samples/Spirals_.ijm done
Czech Summer (plugins/Scripts/File/Open_Samples/Adelsons_Squares.ijm) 
plugins/Scripts/File/Open_Samples/Adelsons_Squares.ijm done
Czech Summer (plugins/Scripts/Plugins/Utilities/Record_Desktop.py) 
plugins/Scripts/Plugins/Utilities/Record_Desktop.py done
Czech Summer (plugins/Scripts/Plugins/Utilities/Record_Window.py) 
plugins/Scripts/Plugins/Utilities/Record_Window.py done
Czech Summer (plugins/Scripts/Plugins/Registration/Correct_3D_drift.py) 
plugins/Scripts/Plugins/Registration/Correct_3D_drift.py done
Czech Summer (plugins/Scripts/Image/Hyperstacks/Temporal-Color_Code.ijm) 
plugins/Scripts/Image/Hyperstacks/Temporal-Color_Code.ijm done
Czech Summer (plugins/Scripts/Image/Adjust/Scale_to_DPI.js) 
plugins/Scripts/Image/Adjust/Scale_to_DPI.js done
Czech Summer (plugins/Scripts/Image/Color/Set_Color_By_Wavelength.ijm) 
plugins/Scripts/Image/Color/Set_Color_By_Wavelength.ijm done
Czech Summer (scripts/Miji_Test.m) 
scripts/Miji_Test.m done
Czech Summer (scripts/Miji.m) 
scripts/Miji.m done
Czech Summer (scripts/Matlab3DViewerDemo_3.m) 
scripts/Matlab3DViewerDemo_3.m done
Czech Summer (scripts/Matlab3DViewerDemo_1.m) 
scripts/Matlab3DViewerDemo_1.m done
Czech Summer (scripts/IsJava3DInstalled.m) 
scripts/IsJava3DInstalled.m done
Czech Summer (scripts/Matlab3DViewerDemo_2.m) 
scripts/Matlab3DViewerDemo_2.m done
Czech Summer (scripts/Matlab3DViewerIntroduction.m) 
scripts/Matlab3DViewerIntroduction.m done
Czech Summer (scripts/bfopen.m) 
scripts/bfopen.m done
Czech Summer (scripts/InstallJava3D.m) 
scripts/InstallJava3D.m done
Czech Summer (macros/StartupMacros.fiji.ijm) 
macros/StartupMacros.fiji.ijm done
Czech Summer (macros/ImportResultsTable.txt) 
macros/ImportResultsTable.txt done
Czech Summer (macros/listManagement.txt) 
macros/listManagement.txt done
Czech Summer (macros/toolsets/Drawing Tools.txt) 
macros/toolsets/Drawing Tools.txt done
Czech Summer (macros/toolsets/Lookup Tables.txt) 
macros/toolsets/Lookup Tables.txt done
Czech Summer (macros/toolsets/Clear Custom Tools.txt) 
macros/toolsets/Clear Custom Tools.txt done
Czech Summer (luts/ICA2.lut) 
luts/ICA2.lut done
Czech Summer (luts/Magenta Hot.lut) 
luts/Magenta Hot.lut done
Czech Summer (luts/royal.lut) 
luts/royal.lut done
Czech Summer (luts/brgbcmyw.lut) 
luts/brgbcmyw.lut done
Czech Summer (luts/cool.lut) 
luts/cool.lut done
Czech Summer (luts/thal.lut) 
luts/thal.lut done
Czech Summer (luts/phase.lut) 
luts/phase.lut done
Czech Summer (luts/6_shades.lut) 
luts/6_shades.lut done
Czech Summer (luts/Rainbow RGB.lut) 
luts/Rainbow RGB.lut done
Czech Summer (luts/physics.lut) 
luts/physics.lut done
Czech Summer (luts/16_colors.lut) 
luts/16_colors.lut done
Czech Summer (luts/unionjack.lut) 
luts/unionjack.lut done
Czech Summer (luts/thallium.lut) 
luts/thallium.lut done
Czech Summer (luts/sepia.lut) 
luts/sepia.lut done
Czech Summer (luts/Red Hot.lut) 
luts/Red Hot.lut done
Czech Summer (luts/Orange Hot.lut) 
luts/Orange Hot.lut done
Czech Summer (luts/ICA3.lut) 
luts/ICA3.lut done
Czech Summer (luts/blue_orange_icb.lut) 
luts/blue_orange_icb.lut done
Czech Summer (luts/5_ramps.lut) 
luts/5_ramps.lut done
Czech Summer (luts/glasbey.lut) 
luts/glasbey.lut done
Czech Summer (luts/Thermal.lut) 
luts/Thermal.lut done
Czech Summer (luts/Yellow Hot.lut) 
luts/Yellow Hot.lut done
Czech Summer (luts/smart.lut) 
luts/smart.lut done
Czech Summer (luts/edges.lut) 
luts/edges.lut done
Czech Summer (luts/gem.lut) 
luts/gem.lut done
Czech Summer (luts/Green Fire Blue.lut) 
luts/Green Fire Blue.lut done
Czech Summer (luts/ICA.lut) 
luts/ICA.lut done
Czech Summer (luts/Cyan Hot.lut) 
luts/Cyan Hot.lut done
Czech Summer (luts/HiLo.lut) 
luts/HiLo.lut done
Czech Summer (images/icon.png) 
images/icon.png done
Czech Summer (images/icon-flat.png) 
images/icon-flat.png done
Czech Summer (images/function.png) 
images/function.png done
Czech Summer (images/fiji-logo-1.0-128x128.png) 
images/fiji-logo-1.0-128x128.png done
Czech Summer (images/var.png) 
images/var.png done
Czech Summer (images/fiji-logo-1.0-256x256.png) 
images/fiji-logo-1.0-256x256.png done
Done: Czech Summer

Building jars/javassist.jar <- modules/javassist/
Building plugins/Colocalisation_Analysis.jar <- src-plugins/Coloca...
Compiling 42 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:171: warning: unmappable character for encoding ASCII
		gd2.addNumericField("Pixel Size (??m)", pixelSize,3);
		                                 ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:171: warning: unmappable character for encoding ASCII
		gd2.addNumericField("Pixel Size (??m)", pixelSize,3);
		                                  ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:660: warning: unmappable character for encoding ASCII
	+"\tR(rand) mean??sd"
	                ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:660: warning: unmappable character for encoding ASCII
	+"\tR(rand) mean??sd"
	                 ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:668: warning: unmappable character for encoding ASCII
	if (Costes||rBlocks) strPSF =  df3.format(psf*pixelSize*2)+ " ??m ("+df0.format(psf*2)+" pix.)" ;
	                                                              ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:668: warning: unmappable character for encoding ASCII
	if (Costes||rBlocks) strPSF =  df3.format(psf*pixelSize*2)+ " ??m ("+df0.format(psf*2)+" pix.)" ;
	                                                               ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:672: warning: unmappable character for encoding ASCII
		"\t" +df3.format(r2mean) + "??"+ df3.format(r2sd)+
		                            ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java:672: warning: unmappable character for encoding ASCII
		"\t" +df3.format(r2mean) + "??"+ df3.format(r2sd)+
		                             ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:695: warning: unmappable character for encoding ASCII
		//[i.e. E(ch1if ch2>0) ?? E(ch1total)]
		                       ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:695: warning: unmappable character for encoding ASCII
		//[i.e. E(ch1if ch2>0) ?? E(ch1total)]
		                        ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:702: warning: unmappable character for encoding ASCII
		//[i.e. E(ch1 if ch2>ch2threshold) ?? (Ech1total)]
		                                   ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:702: warning: unmappable character for encoding ASCII
		//[i.e. E(ch1 if ch2>ch2threshold) ?? (Ech1total)]
		                                    ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:707: warning: unmappable character for encoding ASCII
		//[i.e. E(ch1>ch1threshold) ?? E(ch1total)]
		                            ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java:707: warning: unmappable character for encoding ASCII
		//[i.e. E(ch1>ch1threshold) ?? E(ch1total)]
		                             ^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/tests/TestImageAccessor.java:389: cannot find symbol
symbol  : constructor Roi(long,long,long,long)
location: class ij.gui.Roi
		Roi rect = new Roi(offset[0], offset[1], size[0], size[1]);
		           ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 error
14 warnings
Compile error
	at fiji.build.Fake.callJavac(Fake.java:556)
	at fiji.build.MiniMaven$POM.build(MiniMaven.java:492)
	at fiji.build.MiniMaven$POM.buildJar(MiniMaven.java:423)
	at fiji.build.SubFake.action(SubFake.java:169)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:331)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:267)
	at fiji.build.Fake.main(Fake.java:55)
Compile error
	at fiji.build.Fake.callJavac(Fake.java:556)
	at fiji.build.MiniMaven$POM.build(MiniMaven.java:492)
	at fiji.build.MiniMaven$POM.buildJar(MiniMaven.java:423)
	at fiji.build.SubFake.action(SubFake.java:169)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:331)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:267)
	at fiji.build.Fake.main(Fake.java:55)
Compile error
	in rule plugins/Colocalisation_Analysis.jar <- src-plugins/Coloca...
	in rule all <- ImageJ fiji jars/ij.jar plugins/loci_tools.jar jar...
Build step 'Execute shell' marked build as failure

More information about the ImageJ-builds mailing list