[ImageJ-builds] Build failed in Jenkins: fiji-full #402
Jenkins Daemon
jenkins at qa.nest-initiative.org
Wed Jul 4 02:32:40 CDT 2012
See <https://qa.nest-initiative.org/job/fiji-full/402/changes>
Changes:
[johannes.schindelin] MiniMaven: fix thinko
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Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener>
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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/io>
[-classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/io/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/backport-util-concurrent/backport-util-concurrent/3.1/backport-util-concurrent-3.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/clibwrapper_jiio.jar>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/target/classes>:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/common/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/stubs/lwf-stubs/target/classes>:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/ome-xml/target/classes>:/home/jenkins/.m2/repository/net/sf/retrotranslator/retrotranslator-runtime/1.2.9/retrotranslator-runtime-1.2.9.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/scifio/target/classes>:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/io/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/io/src/main/java/mpicbg/imglib/io/ImageOpener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/io/src/main/java/mpicbg/imglib/io/LOCI.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/io/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/backport-util-concurrent/backport-util-concurrent/3.1/backport-util-concurrent-3.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/clibwrapper_jiio.jar>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/target/classes>:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/common/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/stubs/lwf-stubs/target/classes>:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/ome-xml/target/classes>:/home/jenkins/.m2/repository/net/sf/retrotranslator/retrotranslator-runtime/1.2.9/retrotranslator-runtime-1.2.9.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/scifio/target/classes>:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Compiling 137 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration>
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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/classes>:/home/jenkins/.m2/repository/backport-util-concurrent/backport-util-concurrent/3.1/backport-util-concurrent-3.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/bio-formats/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/clibwrapper_jiio.jar>:/home/jenkins/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/io/target/classes>:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/target/classes>:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jcommon.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jfreechart.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jsch.jar>:/home/jenkins/.m2/repository/junit/junit/4.5/junit-4.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/jzlib.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/common/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/loci-plugins/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/loci-tools/loci_tools-4.4-SNAPSHOT.jar>:/home/jenkins/.m2/repository/log4j/log4j/1.2.14/log4j-1.2.14.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/stubs/lwf-stubs/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/mdbtools/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/metakit/target/classes>:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg.jar>:/home/jenkins/.m2/repository/essi-unidata/netcdf-java/4.0.41/netcdf-java-4.0.41.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/ome-xml/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes>:/home/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/poi/target/classes>:/home/jenkins/.m2/repository/net/sf/retrotranslator/retrotranslator-runtime/1.2.9/retrotranslator-runtime-1.2.9.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/scifio/target/classes>:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/home/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.jar
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionSegmentation.java>:220: cannot find symbol
symbol : constructor IntegralImageLong(mpicbg.imglib.image.Image<mpicbg.imglib.type.numeric.real.FloatType>,<anonymous mpicbg.imglib.function.Converter<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.integer.LongType>>)
location: class mpicbg.imglib.algorithm.integral.IntegralImageLong<mpicbg.imglib.type.numeric.real.FloatType>
IntegralImageLong< FloatType > intImg = new IntegralImageLong<FloatType>( img, new Converter< FloatType, LongType >()
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 error
Compile error
at fiji.build.Fake.callJavac(Fake.java:554)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:490)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:444)
at fiji.build.MiniMaven$POM.buildJar(MiniMaven.java:421)
at fiji.build.SubFake.action(SubFake.java:169)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:331)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:265)
at fiji.build.Fake.main(Fake.java:55)
Compile error
at fiji.build.Fake.callJavac(Fake.java:554)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:490)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:444)
at fiji.build.MiniMaven$POM.buildJar(MiniMaven.java:421)
at fiji.build.SubFake.action(SubFake.java:169)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:331)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:265)
at fiji.build.Fake.main(Fake.java:55)
Compile error
in rule (fiji.build.SubFake) plugins/Descriptor_based_registratio...
in rule (fiji.build.All) all <- ImageJ fiji jars/ij.jar plugins/l...
Build step 'Execute shell' marked build as failure
Archiving artifacts
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