[ImageJ-builds] Build failed in Jenkins: Fiji-daily #404
jenkins at imagej.net
jenkins at imagej.net
Wed Jul 4 00:02:01 CDT 2012
See <http://jenkins.imagej.net/job/Fiji-daily/404/changes>
Changes:
[Johannes Schindelin] Remove source file that was never used
[Johannes Schindelin] Convert spaces to tab in Fakefile
[Johannes Schindelin] Fiji Build: refactor method to strip ijDir from paths
[Johannes Schindelin] Fiji Build: make sure that rule.getDependencies() result is complete
[Johannes Schindelin] Fiji Build: use makePath() when the path might be absolute already
[Johannes Schindelin] MiniMaven: really also look in Fiji's plugins/ directory for dependencies
[Johannes Schindelin] MiniMaven: support activation by property
[Johannes Schindelin] MiniMaven: try even harder to fall back to jars/ and plugins/
[Johannes Schindelin] Move help-cursor.gif directly into fiji-lib's sources
[Johannes Schindelin] Copy icon.png directly into fiji-compat's sources
[Johannes Schindelin] Use new version of scijava in plugins' pom.xml
[Johannes Schindelin] Fix VIB-lib's pom.xml
[Johannes Schindelin] Update Fiji version to 2.0.0-SNAPSHOT in pom.xml files
[Johannes Schindelin] Bend over for Eclipse's compiler
[Johannes Schindelin] Remove unnecessary UTF-8 encoding block
[Johannes Schindelin] Use latest version of pom-scijava
[Johannes Schindelin] pomize: bump default version to 2.0.0-SNAPSHOT
[Johannes Schindelin] pomize-project: also add the project to the parent POM (if it exists)
[Johannes Schindelin] pomize-project: hardcode a few group ids
[Johannes Schindelin] pomize-project: exit with a failure when there were errors
[Johannes Schindelin] pomize-project: if no errors occurred, auto-commit
[Johannes Schindelin] pomize-project: disallow conversion when there are non-Maven targets
[Johannes Schindelin] pomize-project: fix usage string
[Johannes Schindelin] pomize-project: move plugins.config and images into src/main/resources/
[Johannes Schindelin] pomize-project: handle Fakefile's MAINCLASS variables
[Johannes Schindelin] pomize-project: strip out handled CLASSPATH and MAINCLASS vars from Fakefile
[Johannes Schindelin] pomize-project: never add the artifact itself as dependency
[Johannes Schindelin] pomize: sort targets topologically before converting them
[Johannes Schindelin] pomize: mention what rule it is when != CompileJar
[Johannes Schindelin] pomize: move also javadocs
[Johannes Schindelin] pomize: fix wrong re-use of a global variable
[Johannes Schindelin] pomize: support --all
[Johannes Schindelin] pomize: make finer-grained commits
[Johannes Schindelin] pomize: use proper way to specify the main class
[Johannes Schindelin] pomize: show warnings at end, too
[Johannes Schindelin] pomize: special-case Script Editor's templates
[Johannes Schindelin] pomize: include licenses and READMEs as resources
[Johannes Schindelin] pomize: include *.txt as resources
[Johannes Schindelin] pomize: special-case javac's versions.properties-template
[Johannes Schindelin] pomize: rename Makefiles
[Johannes Schindelin] pomize: delete target/ folders before converting
[Johannes Schindelin] pomize: make sure dependencies' versions are set
[Johannes Schindelin] pomize: make sure that version is set correctly for imported projects
[Johannes Schindelin] pomize: hard-code a couple more groupIds and versions
[Johannes Schindelin] pomize: support references to j3dcore.jar and j3dutils.jar
[Johannes Schindelin] pomize: handle edu_mines_jtk.jar dependencies
[Johannes Schindelin] pomize: handle tools.jar dependencies
[Johannes Schindelin] pomize: handle weka.jar dependencies
[Johannes Schindelin] Download clojure using MiniMaven
[Stephan Preibisch] If input stack is too big, CellContainerFactory is tryed out
[Stephan Preibisch] Added code for Integral Image bead segmentation
[Stephan Preibisch] Continued with Integral image detection
[Johannes Schindelin] Make sure that Mavenized Fiji Build finds the ImageJ root
[Johannes Schindelin] Fiji Build(MiniMaven): always parse pom-fiji-plugins' pom
[Johannes Schindelin] MiniMaven: always try to download snapshots (except when offline)
[Johannes Schindelin] ImageJ.sh: run Fiji Build with 128m heap by default
[Johannes Schindelin] MiniMaven: fix borked up-to-date logic
[Johannes Schindelin] MiniMaven: respect <packaging> tag
[Johannes Schindelin] Move .py scripts out of Record_Screen.jar
[Johannes Schindelin] Mavenize blockmatching_
[Johannes Schindelin] Mavenize bUnwarpJ_
[Johannes Schindelin] Mavenize registration_3d
[Johannes Schindelin] Mavenize IO_
[Johannes Schindelin] Mavenize LSM_Toolbox
[Johannes Schindelin] Mavenize SplineDeformationGenerator_
[Johannes Schindelin] Mavenize level_sets
[Johannes Schindelin] Mavenize Analyze_Reader_Writer
[Johannes Schindelin] Mavenize Color_Histogram
[Johannes Schindelin] Mavenize Color_Inspector_3D
[Johannes Schindelin] Mavenize M_I_P
[Johannes Schindelin] Mavenize Interactive_3D_Surface_Plot
[Johannes Schindelin] Mavenize View5D_
[Johannes Schindelin] Mavenize Volume_Viewer
[Johannes Schindelin] Mavenize IJ_Robot
[Johannes Schindelin] Mavenize Fiji_Updater
[Johannes Schindelin] Mavenize LSM_Reader
[Johannes Schindelin] Mavenize AnalyzeSkeleton_
[Johannes Schindelin] Mavenize Skeletonize3D_
[Johannes Schindelin] Mavenize TurboReg_
[Johannes Schindelin] Mavenize Feature_Detection
[Johannes Schindelin] Mavenize Bug_Submitter
[Johannes Schindelin] Mavenize ToAST_
[Johannes Schindelin] Mavenize MTrack2_
[Johannes Schindelin] Mavenize Time_Stamper
[Johannes Schindelin] Mavenize Series_Labeler
[Johannes Schindelin] Mavenize Statistical_Region_Merging
[Johannes Schindelin] Mavenize Auto_Threshold
[Johannes Schindelin] Mavenize Stack_Manipulation
[Johannes Schindelin] Mavenize FlowJ_
[Johannes Schindelin] Mavenize PIV_analyser
[Johannes Schindelin] Mavenize Video_Editing
[Johannes Schindelin] Mavenize Sync_Win
[Johannes Schindelin] Mavenize Gray_Morphology
[Johannes Schindelin] Mavenize LocalThickness_
[Johannes Schindelin] Mavenize Fiji_Developer
[Johannes Schindelin] Mavenize Manual_Tracking
[Johannes Schindelin] Mavenize Calculator_Plus
[Johannes Schindelin] Mavenize 3D_Objects_Counter
[Johannes Schindelin] Mavenize IsoData_Classifier
[Johannes Schindelin] Mavenize RATS_
[Johannes Schindelin] Mavenize Directionality_
[Johannes Schindelin] Mavenize Algorithm_Launcher
[Johannes Schindelin] Mavenize Anisotropic_Diffusion_2D
[Johannes Schindelin] Mavenize Simple_Neurite_Tracer
[Johannes Schindelin] Mavenize QuickPALM_
[Johannes Schindelin] Mavenize 3D_Viewer
[Johannes Schindelin] Mavenize CPU_Meter
[Johannes Schindelin] Mavenize TopoJ_
[Johannes Schindelin] Mavenize Differentials_
[Johannes Schindelin] Mavenize MosaicJ_
[Johannes Schindelin] Mavenize PointPicker_
[Johannes Schindelin] Mavenize SheppLogan_
[Johannes Schindelin] Mavenize StackReg_
[Johannes Schindelin] Mavenize UnwarpJ_
[Johannes Schindelin] Mavenize Snakuscule_
[Johannes Schindelin] Mavenize imagescience
[Johannes Schindelin] Mavenize TransformJ_
[Johannes Schindelin] Mavenize FeatureJ_
[Johannes Schindelin] Mavenize RandomJ_
[Johannes Schindelin] Mavenize Linear_Kuwahara
[Johannes Schindelin] Mavenize Thread_Killer
[Johannes Schindelin] Mavenize Samples_
[Johannes Schindelin] Mavenize mij
[Johannes Schindelin] Mavenize wavelets
[Johannes Schindelin] Mavenize imageware
[Johannes Schindelin] Mavenize Extended_Depth_Field
[Johannes Schindelin] Mavenize panorama_
[Johannes Schindelin] Mavenize 3D_Blob_Segmentation
[Johannes Schindelin] Mavenize Kuwahara_Filter
[Johannes Schindelin] Mavenize Action_Bar
[Johannes Schindelin] Mavenize Multi_Kymograph
[Johannes Schindelin] Mavenize Colour_Deconvolution
[Johannes Schindelin] Mavenize Dichromacy_
[Johannes Schindelin] Mavenize Threshold_Colour
[Johannes Schindelin] Mavenize Helmholtz_Analysis
[Johannes Schindelin] Mavenize Reconstruct_Reader
[Johannes Schindelin] Mavenize FS_Align_TrakEM2
[Johannes Schindelin] Mavenize fiji-compat
[Johannes Schindelin] Mavenize BalloonSegmentation_
[Johannes Schindelin] Mavenize CorrectBleach_
[Johannes Schindelin] Mavenize javac
[Johannes Schindelin] Mavenize fiji-scripting
[Johannes Schindelin] Mavenize Jython_Interpreter
[Johannes Schindelin] Mavenize Clojure_Interpreter
[Johannes Schindelin] Mavenize JRuby_Interpreter
[Johannes Schindelin] Mavenize BeanShell_Interpreter
[Johannes Schindelin] Mavenize fiji-lib
[Johannes Schindelin] Mavenize Lasso_and_Blow_Tool
[Johannes Schindelin] Mavenize Fiji_Plugins
[Johannes Schindelin] Mavenize VIB_
[Johannes Schindelin] Mavenize register_virtual_stack_slices
[Johannes Schindelin] Mavenize Siox_Segmentation
[Johannes Schindelin] Mavenize CLI_
[Johannes Schindelin] Mavenize Javascript_
[Johannes Schindelin] Mavenize Stitching_
[Johannes Schindelin] Mavenize fake
[Johannes Schindelin] Mavenize Refresh_Javas
[Johannes Schindelin] Mavenize Arrow_
[Johannes Schindelin] Mavenize Colocalisation_Analysis
[Johannes Schindelin] Mavenize Script_Editor
[Johannes Schindelin] Mavenize Trainable_Segmentation
[Johannes Schindelin] Mavenize jep
[Johannes Schindelin] Mavenize Image_Expression_Parser
[Johannes Schindelin] Mavenize SPIM_Opener
[Johannes Schindelin] Mavenize SPIM_Registration
[Johannes Schindelin] Mavenize Graph_Cut
[Johannes Schindelin] Mavenize weave_jy2java
[Johannes Schindelin] Mavenize TrackMate_
[Johannes Schindelin] Mavenize Descriptor_based_registration
[Johannes Schindelin] Mavenize Fiji_Package_Maker
[Johannes Schindelin] Mavenize Updater_Fix
[Johannes Schindelin] Fakefile: now that Updater is Mavenized, be explicit about its dependencies
------------------------------------------
[...truncated 308 lines...]
Entering 'modules/imagej2'
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Entering 'modules/javassist'
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Entering 'modules/mpicbg'
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Entering 'modules/weka'
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+ ./Build.sh -Dminimaven.updateinterval=1 --
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building jars/fake.jar-rebuild <-
Compiling 22 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fake
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Building <- jars/fake.jar-rebuild
Building jars/jsch.jar <- modules/jsch/
Building in modules/jsch/
Building dist/lib/jsch-0.1.44.jar <- src/com/jcraft/jsch/Buffer.ja...
Buildfile: build.xml
init:
[mkdir] Created dir: /data/devel/jenkins/jobs/Fiji-daily/workspace/modules/jsch/build
compile:
[javac] Compiling 103 source files to /data/devel/jenkins/jobs/Fiji-daily/workspace/modules/jsch/build
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
dist:
[mkdir] Created dir: /data/devel/jenkins/jobs/Fiji-daily/workspace/modules/jsch/dist/lib
[jar] Building jar: /data/devel/jenkins/jobs/Fiji-daily/workspace/modules/jsch/dist/lib/jsch-0.1.44.jar
BUILD SUCCESSFUL
Total time: 2 seconds
Building jsch.jar <- dist/lib/jsch-0.1.44.jar
Leaving modules/jsch/
Building plugins/Fiji_Developer.jar <- src-plugins/Fiji_Developer/
Compiling 9 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Jama
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Jama/src/main/java/Jama/Matrix.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 309 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/ij/process/AutoThresholder.java:612: warning: unmappable character for encoding ASCII
// Threshold t is such that yt???1 > yt <= yt+1.
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/ij/process/AutoThresholder.java:612: warning: unmappable character for encoding ASCII
// Threshold t is such that yt???1 > yt <= yt+1.
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/ij/process/AutoThresholder.java:612: warning: unmappable character for encoding ASCII
// Threshold t is such that yt???1 > yt <= yt+1.
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacAdapter.java:4: package com.apple.eawt does not exist
import com.apple.eawt.*;
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacAdapter.java:9: cannot find symbol
symbol: class ApplicationListener
public class MacAdapter implements PlugIn, ApplicationListener, Runnable {
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacAdapter.java:18: cannot find symbol
symbol : class ApplicationEvent
location: class MacAdapter
public void handleAbout(ApplicationEvent event) {
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacAdapter.java:23: cannot find symbol
symbol : class ApplicationEvent
location: class MacAdapter
public void handleOpenFile(ApplicationEvent event) {
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacAdapter.java:30: cannot find symbol
symbol : class ApplicationEvent
location: class MacAdapter
public void handlePreferences(ApplicationEvent event) {
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacAdapter.java:34: cannot find symbol
symbol : class ApplicationEvent
location: class MacAdapter
public void handleQuit(ApplicationEvent event) {
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacAdapter.java:45: cannot find symbol
symbol : class ApplicationEvent
location: class MacAdapter
public void handleOpenApplication(ApplicationEvent event) {}
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacAdapter.java:46: cannot find symbol
symbol : class ApplicationEvent
location: class MacAdapter
public void handleReOpenApplication(ApplicationEvent event) {}
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacAdapter.java:47: cannot find symbol
symbol : class ApplicationEvent
location: class MacAdapter
public void handlePrintFile(ApplicationEvent event) {}
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacAdapter.java:13: cannot find symbol
symbol : class Application
location: class MacAdapter
Application app = new Application();
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacAdapter.java:13: cannot find symbol
symbol : class Application
location: class MacAdapter
Application app = new Application();
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacClipboard.java:108: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class for a varargs call
cast to java.lang.Class[] for a non-varargs call and to suppress this warning
Method m = c.getMethod("isInitialized", null);
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacClipboard.java:109: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
Boolean b= (Boolean)m.invoke(null, null);
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacClipboard.java:111: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class for a varargs call
cast to java.lang.Class[] for a non-varargs call and to suppress this warning
m= c.getMethod("open", null);
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacClipboard.java:112: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
m.invoke(null, null);
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacClipboard.java:127: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class for a varargs call
cast to java.lang.Class[] for a non-varargs call and to suppress this warning
m = c.getMethod("getNaturalBounds", null);
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacClipboard.java:128: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
Object rect= m.invoke(importer, null);
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacClipboard.java:132: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class<?> for a varargs call
cast to java.lang.Class<?>[] for a non-varargs call and to suppress this warning
m = rect.getClass().getMethod("getWidth", null);
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacClipboard.java:133: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
Integer width= (Integer)m.invoke(rect, null);
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacClipboard.java:134: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class<?> for a varargs call
cast to java.lang.Class<?>[] for a non-varargs call and to suppress this warning
m = rect.getClass().getMethod("getHeight", null);
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/modules/ImageJA/src/main/java/MacClipboard.java:135: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
Integer height= (Integer)m.invoke(rect, null);
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
11 errors
13 warnings
Compile error
at fiji.build.Fake.callJavac(Fake.java:554)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:477)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:431)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:431)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:431)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:431)
at fiji.build.MiniMaven$POM.buildJar(MiniMaven.java:408)
at fiji.build.SubFake.action(SubFake.java:163)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:331)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:265)
at fiji.build.Fake.main(Fake.java:55)
Compile error
at fiji.build.Fake.callJavac(Fake.java:554)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:477)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:431)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:431)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:431)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:431)
at fiji.build.MiniMaven$POM.buildJar(MiniMaven.java:408)
at fiji.build.SubFake.action(SubFake.java:163)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:331)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:265)
at fiji.build.Fake.main(Fake.java:55)
Compile error
in rule plugins/Fiji_Developer.jar <- src-plugins/Fiji_Developer/
in rule all <- ImageJ fiji jars/ij.jar plugins/loci_tools.jar jar...
Build step 'Execute shell' marked build as failure
Archiving artifacts
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