[ImageJ-builds] Build failed in Jenkins: fiji-windows-core #251
Jenkins Daemon
jenkins at qa.nest-initiative.org
Fri Dec 14 18:30:11 CST 2012
See <https://qa.nest-initiative.org/job/fiji-windows-core/251/changes>
Changes:
[Johannes Schindelin] Increase jep's version
[Johannes Schindelin] Use Mavenized TrakEM2
[Johannes Schindelin] gitignore two more generated files
[Johannes Schindelin] Since TrakEM2 is Mavenized, we no longer need the postgresql binary
[Johannes Schindelin] MiniMaven: prefer true -SNAPSHOT versions over timestamps
[Johannes Schindelin] MiniMaven: handle release versions correctly
[Johannes Schindelin] Adjust .gitignore after the Mavenization of TrakEM2
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[...truncated 1059 lines...]
Checking for new snapshot of poi-loci
Downloading http://dev.loci.wisc.edu/maven2/snapshots/loci/poi-loci/4.5-SNAPSHOT/maven-metadata.xml to C:\Users\jenkins\.m2\repository\loci\poi-loci\4.5-SNAPSHOT\maven-metadata-snapshot.xml
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20121214.052349-63.pom.sha1
Downloading http://dev.loci.wisc.edu/maven2/snapshots/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20121214.052349-63.pom.sha1 to C:\Users\jenkins\.m2\repository\loci\poi-loci\4.5-SNAPSHOT\poi-loci-4.5-20121214.052349-63.pom.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20121214.052349-63.pom
Downloading http://dev.loci.wisc.edu/maven2/snapshots/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20121214.052349-63.pom to C:\Users\jenkins\.m2\repository\loci\poi-loci\4.5-SNAPSHOT\poi-loci-4.5-20121214.052349-63.pom
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20121214.052349-63.jar.sha1
Downloading http://dev.loci.wisc.edu/maven2/snapshots/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20121214.052349-63.jar.sha1 to C:\Users\jenkins\.m2\repository\loci\poi-loci\4.5-SNAPSHOT\poi-loci-4.5-20121214.052349-63.jar.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20121214.052349-63.jar
Downloading poi-loci
Downloading http://dev.loci.wisc.edu/maven2/snapshots/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20121214.052349-63.jar to C:\Users\jenkins\.m2\repository\loci\poi-loci\4.5-SNAPSHOT\poi-loci-4.5-20121214.052349-63.jar
Parsing C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.pom
Parsing C:\Users\jenkins\.m2\repository\org\apache\commons\commons-parent\5\commons-parent-5.pom
Parsing C:\Users\jenkins\.m2\repository\edu\ucar\netcdf\4.0.03\netcdf-4.0.03.pom
Fiji_Plugins not up-to-date because 32 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta_Clipboard.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\denoise\ROF_Denoise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Linear_Gradient.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Radial_Gradient.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\AreaCalculations.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\Shape_Index_Map.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\help\Context_Help.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\EDT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\SEDT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Binary_to_Point_Selection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Rounded_Rectangle.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Select_Bounding_Box.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\CompositeConverter2.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Dynamic_Reslice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Hyperstack_rearranger.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Radial_Reslice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Circle_Fitter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\CurrentSlice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\DistanceComparator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Fiji_Uploader.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\KDTree.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NearestNeighborSearch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NNearestNeighborSearch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Leaf.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Node.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\NonLeaf.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\SimpleNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\RadiusNeighborSearch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Recent_Commands.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\TestKDTree.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\Retinex_.java)
Descriptor_based_registration not up-to-date because of Fiji_Plugins
Parsing C:\Users\jenkins\.m2\repository\loci\loci-common\4.5-SNAPSHOT\loci-common-4.5-20121214.052533-61.pom
Parsing C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.5-SNAPSHOT\jai_imageio-4.5-20121214.052239-63.pom
Parsing C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.5-SNAPSHOT\lwf-stubs-4.5-20121214.052404-62.pom
Parsing C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.5-SNAPSHOT\loci_plugins-4.5-20121214.052546-60.pom
Parsing C:\Users\jenkins\.m2\repository\loci\bio-formats\4.5-SNAPSHOT\bio-formats-4.5-20121214.052518-61.pom
Parsing C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.5-SNAPSHOT\mdbtools-java-4.5-20121214.052257-63.pom
Parsing C:\Users\jenkins\.m2\repository\loci\metakit\4.5-SNAPSHOT\metakit-4.5-20121214.052503-61.pom
Parsing C:\Users\jenkins\.m2\repository\loci\poi-loci\4.5-SNAPSHOT\poi-loci-4.5-20121214.052349-63.pom
Fiji_Plugins not up-to-date because 32 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta_Clipboard.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\denoise\ROF_Denoise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Linear_Gradient.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Radial_Gradient.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\AreaCalculations.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\Shape_Index_Map.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\help\Context_Help.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\EDT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\SEDT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Binary_to_Point_Selection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Rounded_Rectangle.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Select_Bounding_Box.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\CompositeConverter2.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Dynamic_Reslice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Hyperstack_rearranger.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Radial_Reslice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Circle_Fitter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\CurrentSlice.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\DistanceComparator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Fiji_Uploader.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\KDTree.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NearestNeighborSearch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NNearestNeighborSearch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Leaf.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Node.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\NonLeaf.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\SimpleNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\RadiusNeighborSearch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Recent_Commands.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\TestKDTree.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\Retinex_.java)
Compiling 32 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta_Clipboard.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\denoise\ROF_Denoise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Linear_Gradient.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Radial_Gradient.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\AreaCalculations.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\Shape_Index_Map.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\help\Context_Help.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\EDT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\SEDT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Binary_to_Point_Selection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Rounded_Rectangle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Select_Bounding_Box.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\CompositeConverter2.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Dynamic_Reslice.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Hyperstack_rearranger.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Radial_Reslice.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Circle_Fitter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\CurrentSlice.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\DistanceComparator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Fiji_Uploader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\KDTree.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NearestNeighborSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NNearestNeighborSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Leaf.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Node.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\NonLeaf.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\SimpleNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\RadiusNeighborSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Recent_Commands.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\TestKDTree.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\Retinex_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\Shape_Index_Map.java:17: warning: unmappable character for encoding Cp1252
* curvature scales,� Image Vision Comput, vol. 10, no. 8,
^
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\Retinex_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 warning
SPIM_Opener not up-to-date because 16 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Check_Directories.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Combine_SPIM_Projects.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Count_Files.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\DoubleSlider.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MaximumProjector.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MinimumProjector.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\OpenerGenericDialog.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Projector.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Rename.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMExperiment.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMRegularStack.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMStack.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMVirtualStack.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIM_Opener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\XMLReader.java)
Compiling 16 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Check_Directories.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Combine_SPIM_Projects.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Count_Files.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\DoubleSlider.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MaximumProjector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MinimumProjector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\OpenerGenericDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Projector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Rename.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMExperiment.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMRegularStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMVirtualStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIM_Opener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\XMLReader.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
SPIM_Registration not up-to-date because 146 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Apply_External_Transformation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Bead_Registration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Multi_View_Deconvolution.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Multi_View_Fusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Regtest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\FileOpenMenuEntry.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\GraphFrame.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\MouseListenerTimelapse.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\RegistrationStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\TimeLapseDisplay.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\ICP.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\PointMatchIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\SimplePointMatchIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\AbstractPointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\exception\NoSuitablePointsException.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LinkedPoint.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LocalCoordinateSystemPointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Matcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorSubsetMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Quaternion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SimpleMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SubsetMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\FixedModel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\RigidModelOld3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantAffineModel3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantFixedModel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantModel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel2D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantSimilarityModel3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\ModelPointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\LinearDistance.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\ManhattanDistance.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SimilarityMeasure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SquareDistance.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\SimplePointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\PointNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\TestPointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\VirtualPointNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\ClusterReconstruction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\Blending.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimple.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimpleFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightenerFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\Entropy.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\EntropyFloatArray3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFast.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFastFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\FusionControl.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContent.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContentFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightenerFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalell.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalellMaxWeight.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequential.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequentialDifferentOutput.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\PreDeconvolutionFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\SPIMImageFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserException.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserGeneral.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserObject.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserSPIM.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ImgLibSaver.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\IOFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ParsePattern.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ProgramConfiguration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\SPIMConfiguration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\TextFileAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\XMLFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\Java3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\PointMatchGeneric.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\SketchTikZFileObject.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationPhaseCorrelation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationSPIM.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileSPIM.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\ExtractPSF.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonFFT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonMultiViewDeconvolution.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\AdjustInput.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\BayesMVDeconvolution.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Block.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\CUDAConvolution.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\CUDATools.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Deconvolver.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFTThreads.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRInput.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\preprocessing\AutomaticAngleSetup.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\Reconstruction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\Bead.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadRegistration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadSegmentation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadStructure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatisticsImpl.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorPairWise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\DoGMaximum.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\LaPlaceFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\RejectStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\AbstractDetection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystem3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystemSecure3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CorrespondenceExtraction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\ModelBased3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\SparseCorrespondenceExtraction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\Detection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionRegistration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionSegmentation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionStructure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionView.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleiConfiguration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\Nucleus.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusStructure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ComponentProperties.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ConnectedComponent.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewDataBeads.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewStructure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\segmentation\InteractiveDoG.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\simulation\SimulateBeadImage.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\FastMatrix.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\FastMatrixN.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\JacobiDouble.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Line.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Plane.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Point3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Triangle.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\BeadTransformGroup.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Motion3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\PreviewRegistration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Viewer3dFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationSketchTikZ.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizeBeads.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\util\TransformUtils.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\MultiChannel_SPIM_Registration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIMRegistrationAbstract.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration_File.java)
Compiling 146 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration
[-source, 1.5, -target, 1.5, -classpath, 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C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\exception\NoSuitablePointsException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LinkedPoint.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LocalCoordinateSystemPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Matcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorSubsetMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Quaternion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SimpleMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SubsetMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\FixedModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\RigidModelOld3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantAffineModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantFixedModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantSimilarityModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\ModelPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\LinearDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\ManhattanDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SimilarityMeasure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SquareDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\SimplePointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\PointNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\TestPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\VirtualPointNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\ClusterReconstruction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\Blending.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimple.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimpleFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightenerFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\Entropy.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\EntropyFloatArray3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFast.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFastFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\FusionControl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContentFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightenerFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalell.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalellMaxWeight.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequential.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequentialDifferentOutput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\PreDeconvolutionFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\SPIMImageFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserGeneral.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ImgLibSaver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\IOFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ParsePattern.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ProgramConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\SPIMConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\TextFileAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\XMLFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\Java3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\PointMatchGeneric.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\SketchTikZFileObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationPhaseCorrelation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\ExtractPSF.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonFFT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonMultiViewDeconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\AdjustInput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\BayesMVDeconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Block.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\CUDAConvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\CUDATools.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Deconvolver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFTThreads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRInput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\preprocessing\AutomaticAngleSetup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\Reconstruction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\Bead.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatisticsImpl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorPairWise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\DoGMaximum.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\LaPlaceFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\RejectStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\AbstractDetection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystem3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystemSecure3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CorrespondenceExtraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\ModelBased3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\SparseCorrespondenceExtraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\Detection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleiConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\Nucleus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ComponentProperties.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ConnectedComponent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewDataBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\segmentation\InteractiveDoG.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\simulation\SimulateBeadImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\FastMatrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\FastMatrixN.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\JacobiDouble.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Line.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Plane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Point3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Triangle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\BeadTransformGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Motion3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\PreviewRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Viewer3dFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationSketchTikZ.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizeBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\util\TransformUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\MultiChannel_SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIMRegistrationAbstract.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration_File.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcmail-jdk14\138\bcmail-jdk14-138.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcprov-jdk14\138\bcprov-jdk14-138.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\com\lowagie\itext\2.1.5\itext-2.1.5.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.5-SNAPSHOT\jai_imageio-4.5-20121214.052239-63.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\org\jfree\jcommon\1.0.17\jcommon-1.0.17.jar;C:\Users\jenkins\.m2\repository\org\jfree\jfreechart\1.0.14\jfreechart-1.0.14.jar;C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.5-SNAPSHOT\loci-common-4.5-20121214.052533-61.jar;C:\Users\jenkins\.m2\repository\loci\loci-legacy\4.5-SNAPSHOT\loci-legacy-4.5-20121214.052328-57.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.5-SNAPSHOT\lwf-stubs-4.5-20121214.052404-62.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.5-SNAPSHOT\ome-xml-4.5-20121214.052418-62.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.5-SNAPSHOT\scifio-4.5-20121214.052438-61.jar;C:\Users\jenkins\.m2\repository\loci\scifio-devel\4.5-SNAPSHOT\scifio-devel-4.5-20121214.052314-57.jar;C:\Users\jenkins\.m2\repository\javax\servlet\servlet-api\2.5\servlet-api-2.5.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar;C:\Users\jenkins\.m2\repository\xml-apis\xml-apis\1.3.04\xml-apis-1.3.04.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Trying to download http://dev.loci.wisc.edu/maven2/releases/mpicbg/imglib-ij/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/mpicbg/imglib-ij/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:423)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:311)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:269)
at fiji.build.minimaven.POM.download(POM.java:107)
at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:692)
at fiji.build.minimaven.POM.getDependencies(POM.java:450)
at fiji.build.minimaven.POM.getDependencies(POM.java:425)
at fiji.build.minimaven.POM.upToDate(POM.java:119)
at fiji.build.minimaven.POM.build(POM.java:209)
at fiji.build.minimaven.POM.buildJar(POM.java:197)
at fiji.build.SubFake.buildPOM(SubFake.java:273)
at fiji.build.SubFake.buildPOM(SubFake.java:255)
at fiji.build.SubFake.action(SubFake.java:223)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:263)
at fiji.build.Fake.main(Fake.java:60)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/mpicbg/imglib-ij/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
Downloading http://dev.loci.wisc.edu/maven2/snapshots/mpicbg/imglib-ij/2.0.0-SNAPSHOT/maven-metadata.xml.sha1 to C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\maven-metadata-snapshot.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/mpicbg/imglib-ij/2.0.0-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of imglib-ij
Downloading http://dev.loci.wisc.edu/maven2/snapshots/mpicbg/imglib-ij/2.0.0-SNAPSHOT/maven-metadata.xml to C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\maven-metadata-snapshot.xml
Stitching_ not up-to-date because 59 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\DeltaVision_Converter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\CollectionStitchingImgLib.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\ComparePair.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\AveragePixelFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\BlendingPixelFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\Fusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\ImageInterpolation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\MaxPixelFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\MedianPixelFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\MinPixelFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\OverlayFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\PixelFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\GlobalOptimization.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\ImageCollectionElement.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\ImagePlusTimePoint.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\PairWiseStitchingImgLib.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\PairWiseStitchingResult.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\Peak.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\PointMatchStitching.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\StitchingParameters.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\TextFileAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\TileConfigurationStitching.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\plugin\GridType.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\plugin\Stitching_Grid.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\plugin\Stitching_Pairwise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\CommonFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\CrossCorrelationResult2D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\CrossCorrelationResult3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\FloatArray.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\FloatArray2D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\FloatArray3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\GridLayout.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\ImageInformation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\CoordinateTransform.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\ErrorStatistic.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\InvertibleCoordinateTransform.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\InvertibleModel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\Model.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\NoninvertibleModelException.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\NotEnoughDataPointsException.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\PaintInvertibleCoordinateTransformThread.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\Point.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\PointMatch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\Tile.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\TileConfiguration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\TranslationModel2D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\TranslationModel3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\OverlapProperties.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\Point2D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\Point3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\Quicksortable.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitching_2D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitching_3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Image_Collection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Image_Directory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Image_Grid.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Image_Grid_Sequence.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Many_Images.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Multiple_Series_File.java)
Compiling 59 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\bio-formats\4.5-SNAPSHOT\bio-formats-4.5-20121214.052518-61.jar;C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.5-SNAPSHOT\jai_imageio-4.5-20121214.052239-63.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-legacy\4.5-SNAPSHOT\loci-legacy-4.5-20121214.052328-57.jar;C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.5-SNAPSHOT\loci_plugins-4.5-20121214.052546-60.jar;C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.5-SNAPSHOT\lwf-stubs-4.5-20121214.052404-62.jar;C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.5-SNAPSHOT\mdbtools-java-4.5-20121214.052257-63.jar;C:\Users\jenkins\.m2\repository\loci\metakit\4.5-SNAPSHOT\metakit-4.5-20121214.052503-61.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\edu\ucar\netcdf\4.0.03\netcdf-4.0.03.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.5-SNAPSHOT\ome-xml-4.5-20121214.052418-62.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\poi-loci\4.5-SNAPSHOT\poi-loci-4.5-20121214.052349-63.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.5-SNAPSHOT\scifio-4.5-20121214.052438-61.jar;C:\Users\jenkins\.m2\repository\loci\scifio-devel\4.5-SNAPSHOT\scifio-devel-4.5-20121214.052314-57.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\DeltaVision_Converter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\CollectionStitchingImgLib.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\ComparePair.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\AveragePixelFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\BlendingPixelFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\Fusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\ImageInterpolation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\MaxPixelFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\MedianPixelFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\MinPixelFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\OverlayFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\PixelFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\GlobalOptimization.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\ImageCollectionElement.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\ImagePlusTimePoint.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\PairWiseStitchingImgLib.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\PairWiseStitchingResult.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\Peak.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\PointMatchStitching.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\StitchingParameters.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\TextFileAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\TileConfigurationStitching.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\plugin\GridType.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\plugin\Stitching_Grid.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\plugin\Stitching_Pairwise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\CommonFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\CrossCorrelationResult2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\CrossCorrelationResult3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\FloatArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\FloatArray2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\FloatArray3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\GridLayout.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\ImageInformation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\CoordinateTransform.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\ErrorStatistic.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\InvertibleCoordinateTransform.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\InvertibleModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\Model.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\NoninvertibleModelException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\NotEnoughDataPointsException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\PaintInvertibleCoordinateTransformThread.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\Point.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\PointMatch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\Tile.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\TileConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\TranslationModel2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\TranslationModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\OverlapProperties.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\Point2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\Point3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\Quicksortable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitching_2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitching_3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Image_Collection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Image_Directory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Image_Grid.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Image_Grid_Sequence.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Many_Images.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Multiple_Series_File.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\bio-formats\4.5-SNAPSHOT\bio-formats-4.5-20121214.052518-61.jar;C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.5-SNAPSHOT\jai_imageio-4.5-20121214.052239-63.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-legacy\4.5-SNAPSHOT\loci-legacy-4.5-20121214.052328-57.jar;C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.5-SNAPSHOT\loci_plugins-4.5-20121214.052546-60.jar;C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.5-SNAPSHOT\lwf-stubs-4.5-20121214.052404-62.jar;C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.5-SNAPSHOT\mdbtools-java-4.5-20121214.052257-63.jar;C:\Users\jenkins\.m2\repository\loci\metakit\4.5-SNAPSHOT\metakit-4.5-20121214.052503-61.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\edu\ucar\netcdf\4.0.03\netcdf-4.0.03.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.5-SNAPSHOT\ome-xml-4.5-20121214.052418-62.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\poi-loci\4.5-SNAPSHOT\poi-loci-4.5-20121214.052349-63.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.5-SNAPSHOT\scifio-4.5-20121214.052438-61.jar;C:\Users\jenkins\.m2\repository\loci\scifio-devel\4.5-SNAPSHOT\scifio-devel-4.5-20121214.052314-57.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Trying to download http://dev.loci.wisc.edu/maven2/releases/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:423)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:311)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:269)
at fiji.build.minimaven.POM.download(POM.java:107)
at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:692)
at fiji.build.minimaven.POM.getDependencies(POM.java:450)
at fiji.build.minimaven.POM.getDependencies(POM.java:425)
at fiji.build.minimaven.POM.getClassPath(POM.java:393)
at fiji.build.minimaven.POM.build(POM.java:223)
at fiji.build.minimaven.POM.buildJar(POM.java:197)
at fiji.build.SubFake.buildPOM(SubFake.java:273)
at fiji.build.SubFake.buildPOM(SubFake.java:255)
at fiji.build.SubFake.action(SubFake.java:223)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:263)
at fiji.build.Fake.main(Fake.java:60)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
Downloading http://dev.loci.wisc.edu/maven2/snapshots/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/maven-metadata.xml.sha1 to C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\maven-metadata-snapshot.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of imglib-algorithms
Downloading http://dev.loci.wisc.edu/maven2/snapshots/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/maven-metadata.xml to C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\maven-metadata-snapshot.xml
Compiling 16 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\SPIM_Registration-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\Stitching_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcmail-jdk14\138\bcmail-jdk14-138.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcprov-jdk14\138\bcprov-jdk14-138.jar;C:\Users\jenkins\.m2\repository\loci\bio-formats\4.5-SNAPSHOT\bio-formats-4.5-20121214.052518-61.jar;C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\com\lowagie\itext\2.1.5\itext-2.1.5.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.5-SNAPSHOT\jai_imageio-4.5-20121214.052239-63.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\org\jfree\jcommon\1.0.17\jcommon-1.0.17.jar;C:\Users\jenkins\.m2\repository\org\jfree\jfreechart\1.0.14\jfreechart-1.0.14.jar;C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.5-SNAPSHOT\loci-common-4.5-20121214.052533-61.jar;C:\Users\jenkins\.m2\repository\loci\loci-legacy\4.5-SNAPSHOT\loci-legacy-4.5-20121214.052328-57.jar;C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.5-SNAPSHOT\loci_plugins-4.5-20121214.052546-60.jar;C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.5-SNAPSHOT\lwf-stubs-4.5-20121214.052404-62.jar;C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.5-SNAPSHOT\mdbtools-java-4.5-20121214.052257-63.jar;C:\Users\jenkins\.m2\repository\loci\metakit\4.5-SNAPSHOT\metakit-4.5-20121214.052503-61.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\edu\ucar\netcdf\4.0.03\netcdf-4.0.03.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.5-SNAPSHOT\ome-xml-4.5-20121214.052418-62.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\poi-loci\4.5-SNAPSHOT\poi-loci-4.5-20121214.052349-63.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.5-SNAPSHOT\scifio-4.5-20121214.052438-61.jar;C:\Users\jenkins\.m2\repository\loci\scifio-devel\4.5-SNAPSHOT\scifio-devel-4.5-20121214.052314-57.jar;C:\Users\jenkins\.m2\repository\javax\servlet\servlet-api\2.5\servlet-api-2.5.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar;C:\Users\jenkins\.m2\repository\xml-apis\xml-apis\1.3.04\xml-apis-1.3.04.jar, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\plugin\DescriptorParameters.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\plugin\Descriptor_based_registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\plugin\Descriptor_based_series_registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\plugin\Manual_Landmark_Selection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\ComparePair.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\Matching.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\OverlayFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\Particle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\DoneButtonListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\ExtendedPointMatch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\ListListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\LoadListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\Match.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\RemoveItemListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\SaveListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\Select_Points.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\SPIM_Registration-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\Stitching_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcmail-jdk14\138\bcmail-jdk14-138.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcprov-jdk14\138\bcprov-jdk14-138.jar;C:\Users\jenkins\.m2\repository\loci\bio-formats\4.5-SNAPSHOT\bio-formats-4.5-20121214.052518-61.jar;C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20121214.061811-1019.jar;C:\Users\jenkins\.m2\repository\com\lowagie\itext\2.1.5\itext-2.1.5.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.5-SNAPSHOT\jai_imageio-4.5-20121214.052239-63.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\org\jfree\jcommon\1.0.17\jcommon-1.0.17.jar;C:\Users\jenkins\.m2\repository\org\jfree\jfreechart\1.0.14\jfreechart-1.0.14.jar;C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.5-SNAPSHOT\loci-common-4.5-20121214.052533-61.jar;C:\Users\jenkins\.m2\repository\loci\loci-legacy\4.5-SNAPSHOT\loci-legacy-4.5-20121214.052328-57.jar;C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.5-SNAPSHOT\loci_plugins-4.5-20121214.052546-60.jar;C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.5-SNAPSHOT\lwf-stubs-4.5-20121214.052404-62.jar;C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.5-SNAPSHOT\mdbtools-java-4.5-20121214.052257-63.jar;C:\Users\jenkins\.m2\repository\loci\metakit\4.5-SNAPSHOT\metakit-4.5-20121214.052503-61.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\edu\ucar\netcdf\4.0.03\netcdf-4.0.03.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.5-SNAPSHOT\ome-xml-4.5-20121214.052418-62.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\poi-loci\4.5-SNAPSHOT\poi-loci-4.5-20121214.052349-63.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.5-SNAPSHOT\scifio-4.5-20121214.052438-61.jar;C:\Users\jenkins\.m2\repository\loci\scifio-devel\4.5-SNAPSHOT\scifio-devel-4.5-20121214.052314-57.jar;C:\Users\jenkins\.m2\repository\javax\servlet\servlet-api\2.5\servlet-api-2.5.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar;C:\Users\jenkins\.m2\repository\xml-apis\xml-apis\1.3.04\xml-apis-1.3.04.jar
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\Matching.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-core/ws/jars\mpicbg-20111128.jar'>
Dichromacy_ not up-to-date because 1 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Dichromacy_\src\main\java\Dichromacy_.java)
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Dichromacy_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Dichromacy_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Dichromacy_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Dichromacy_\src\main\java\Dichromacy_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Dichromacy_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Differentials_ not up-to-date because 1 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\src\main\java\Differentials_.java)
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\src\main\java\Differentials_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Directionality_ not up-to-date because 1 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\src\main\java\fiji\analyze\directionality\Directionality_.java)
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcmail-jdk14\138\bcmail-jdk14-138.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcprov-jdk14\138\bcprov-jdk14-138.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;C:\Users\jenkins\.m2\repository\com\lowagie\itext\2.1.5\itext-2.1.5.jar;C:\Users\jenkins\.m2\repository\org\jfree\jcommon\1.0.17\jcommon-1.0.17.jar;C:\Users\jenkins\.m2\repository\org\jfree\jfreechart\1.0.14\jfreechart-1.0.14.jar;C:\Users\jenkins\.m2\repository\javax\servlet\servlet-api\2.5\servlet-api-2.5.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\xml-apis\xml-apis\1.3.04\xml-apis-1.3.04.jar, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\src\main\java\fiji\analyze\directionality\Directionality_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcmail-jdk14\138\bcmail-jdk14-138.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcprov-jdk14\138\bcprov-jdk14-138.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;C:\Users\jenkins\.m2\repository\com\lowagie\itext\2.1.5\itext-2.1.5.jar;C:\Users\jenkins\.m2\repository\org\jfree\jcommon\1.0.17\jcommon-1.0.17.jar;C:\Users\jenkins\.m2\repository\org\jfree\jfreechart\1.0.14\jfreechart-1.0.14.jar;C:\Users\jenkins\.m2\repository\javax\servlet\servlet-api\2.5\servlet-api-2.5.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\xml-apis\xml-apis\1.3.04\xml-apis-1.3.04.jar
imageware not up-to-date because 30 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Access.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Buffer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Builder.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteBuffer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\BytePointwise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteProcess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteSet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Convolver.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Display.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleBuffer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoublePointwise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleProcess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleSet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatBuffer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatPointwise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatProcess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatSet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FMath.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ImageAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ImageWare.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Pointwise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Process.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortBuffer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortPointwise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortProcess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortSet.java)
Extended_Depth_Field not up-to-date because of imageware
imageware not up-to-date because 30 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Access.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Buffer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Builder.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteBuffer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\BytePointwise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteProcess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteSet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Convolver.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Display.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleBuffer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoublePointwise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleProcess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleSet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatBuffer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatPointwise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatProcess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatSet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FMath.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ImageAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ImageWare.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Pointwise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Process.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortBuffer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortPointwise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortProcess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortSet.java)
Compiling 30 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Access.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Buffer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Builder.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteBuffer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\BytePointwise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteProcess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Convolver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Display.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleBuffer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoublePointwise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleProcess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatBuffer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatPointwise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatProcess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FMath.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ImageAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ImageWare.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Pointwise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Process.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortBuffer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortPointwise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortProcess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortSet.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
wavelets not up-to-date because 5 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\src\main\java\wavelets\ComplexWaveFilter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\src\main\java\wavelets\ComplexWavelet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\src\main\java\wavelets\ImageAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\src\main\java\wavelets\WaveSpline.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\src\main\java\wavelets\WaveSplineFilter.java)
Compiling 5 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\src\main\java\wavelets\ComplexWaveFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\src\main\java\wavelets\ComplexWavelet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\src\main\java\wavelets\ImageAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\src\main\java\wavelets\WaveSpline.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\src\main\java\wavelets\WaveSplineFilter.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Compiling 31 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\target\imageware-2.0.0-SNAPSHOT.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\target\wavelets-2.0.0-SNAPSHOT.jar, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\Demo.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\AbstractEdfAlgorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\Color2BW.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\EdfComplexWavelets.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\EdfRealWavelets.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\EdfSobel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\EdfVariance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\EdfWaveletMaximumModulus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\LogSingleton.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\MorphologicalOperators.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\PostProcessing.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\ProcessTopology.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\Sobel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\Tools.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edf\Variance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edfgui\AboutDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edfgui\AbstractDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edfgui\AdvancedDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edfgui\BasicDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edfgui\ExtendedDepthOfField.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edfgui\LogPane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edfgui\MySlider.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edfgui\MyTableRenderer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edfgui\Parameters.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edfgui\SimpleTableModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edfgui\ThreadEdf.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\edfgui\ThreadTopoProc.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\EDF_Easy_.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\EDF_Expert_.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\EDF_Viewer3D_.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\surfacemap\SurfaceMap3D.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.47g\ij-1.47g.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\target\imageware-2.0.0-SNAPSHOT.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\jenkins\workspace\fiji-windows-core\src-plugins\wavelets\target\wavelets-2.0.0-SNAPSHOT.jar
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Extended_Depth_Field\src\main\java\surfacemap\SurfaceMap3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Skipping artifact TrakEM2_ (for FS_Align_TrakEM2): not found
Trying to download http://dev.loci.wisc.edu/maven2/releases/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:423)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:311)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:269)
at fiji.build.minimaven.POM.download(POM.java:107)
at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:692)
at fiji.build.minimaven.POM.findPOM(POM.java:608)
at fiji.build.minimaven.POM.getDependencies(POM.java:458)
at fiji.build.minimaven.POM.getDependencies(POM.java:425)
at fiji.build.minimaven.POM.upToDate(POM.java:119)
at fiji.build.SubFake.buildPOM(SubFake.java:270)
at fiji.build.SubFake.buildPOM(SubFake.java:255)
at fiji.build.SubFake.action(SubFake.java:223)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:263)
at fiji.build.Fake.main(Fake.java:60)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/maven-metadata.xml.sha1
Downloading http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/maven-metadata.xml.sha1 to C:\Users\jenkins\.m2\repository\sc\fiji\TrakEM2_\1.0b-SNAPSHOT\maven-metadata-snapshot.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of TrakEM2_
Downloading http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/maven-metadata.xml to C:\Users\jenkins\.m2\repository\sc\fiji\TrakEM2_\1.0b-SNAPSHOT\maven-metadata-snapshot.xml
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/TrakEM2_-1.0b-20121214.151658-1.pom.sha1
Downloading http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/TrakEM2_-1.0b-20121214.151658-1.pom.sha1 to C:\Users\jenkins\.m2\repository\sc\fiji\TrakEM2_\1.0b-SNAPSHOT\TrakEM2_-1.0b-20121214.151658-1.pom.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/TrakEM2_-1.0b-20121214.151658-1.pom
Downloading http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/TrakEM2_-1.0b-20121214.151658-1.pom to C:\Users\jenkins\.m2\repository\sc\fiji\TrakEM2_\1.0b-SNAPSHOT\TrakEM2_-1.0b-20121214.151658-1.pom
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/TrakEM2_-1.0b-20121214.151658-1.jar.sha1
Downloading http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/TrakEM2_-1.0b-20121214.151658-1.jar.sha1 to C:\Users\jenkins\.m2\repository\sc\fiji\TrakEM2_\1.0b-SNAPSHOT\TrakEM2_-1.0b-20121214.151658-1.jar.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/TrakEM2_-1.0b-20121214.151658-1.jar
Downloading TrakEM2_
Downloading http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/TrakEM2_-1.0b-20121214.151658-1.jar to C:\Users\jenkins\.m2\repository\sc\fiji\TrakEM2_\1.0b-SNAPSHOT\TrakEM2_-1.0b-20121214.151658-1.jar
Parsing C:\Users\jenkins\.m2\repository\sc\fiji\TrakEM2_\1.0b-SNAPSHOT\TrakEM2_-1.0b-20121214.151658-1.pom
Trying to download http://repo1.maven.org/maven2//sc/fiji/pom-trakem2/1.0-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://repo1.maven.org/maven2//sc/fiji/pom-trakem2/1.0-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:423)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:311)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:269)
at fiji.build.minimaven.POM.download(POM.java:107)
at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:692)
at fiji.build.minimaven.BuildEnvironment.parse(BuildEnvironment.java:177)
at fiji.build.minimaven.POM.findPOM(POM.java:638)
at fiji.build.minimaven.POM.getDependencies(POM.java:458)
at fiji.build.minimaven.POM.getDependencies(POM.java:425)
at fiji.build.minimaven.POM.upToDate(POM.java:119)
at fiji.build.SubFake.buildPOM(SubFake.java:270)
at fiji.build.SubFake.buildPOM(SubFake.java:255)
at fiji.build.SubFake.action(SubFake.java:223)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:263)
at fiji.build.Fake.main(Fake.java:60)
java.io.FileNotFoundException: Could not download pom-trakem2-1.0-SNAPSHOT.jar
at fiji.build.minimaven.POM.download(POM.java:113)
at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:692)
at fiji.build.minimaven.BuildEnvironment.parse(BuildEnvironment.java:177)
at fiji.build.minimaven.POM.findPOM(POM.java:638)
at fiji.build.minimaven.POM.getDependencies(POM.java:458)
at fiji.build.minimaven.POM.getDependencies(POM.java:425)
at fiji.build.minimaven.POM.upToDate(POM.java:119)
at fiji.build.SubFake.buildPOM(SubFake.java:270)
at fiji.build.SubFake.buildPOM(SubFake.java:255)
at fiji.build.SubFake.action(SubFake.java:223)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:263)
at fiji.build.Fake.main(Fake.java:60)
Could not download pom-trakem2: Could not download pom-trakem2-1.0-SNAPSHOT.jar
java.lang.RuntimeException: Parent not found: sc.fiji/pom-trakem2-1.0-SNAPSHOT
at fiji.build.minimaven.BuildEnvironment.parse(BuildEnvironment.java:181)
at fiji.build.minimaven.POM.findPOM(POM.java:638)
at fiji.build.minimaven.POM.getDependencies(POM.java:458)
at fiji.build.minimaven.POM.getDependencies(POM.java:425)
at fiji.build.minimaven.POM.upToDate(POM.java:119)
at fiji.build.SubFake.buildPOM(SubFake.java:270)
at fiji.build.SubFake.buildPOM(SubFake.java:255)
at fiji.build.SubFake.action(SubFake.java:223)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:263)
at fiji.build.Fake.main(Fake.java:60)
Parent not found: sc.fiji/pom-trakem2-1.0-SNAPSHOT
in rule (fiji.build.SubFake) pom-fiji-plugins <- src-plugins/
in rule (fiji.build.All) all <- ImageJ fiji pom-fiji-plugins
Build step 'Execute shell' marked build as failure
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