[ImageJ-builds] Build failed in Jenkins: fiji-windows-full #231
Jenkins Daemon
jenkins at qa.nest-initiative.org
Mon Dec 10 06:07:48 CST 2012
See <https://qa.nest-initiative.org/job/fiji-windows-full/231/changes>
Changes:
[saalfeld] Fakefile needs explicit version numbers of dependencies
[saalfeld] added example script for color compositions of two stacks
[saalfeld] updated mpicbg
------------------------------------------
[...truncated 122 lines...]
Synchronizing submodule url for 'ij-plugins'
Synchronizing submodule url for 'modules/imagej5d'
Synchronizing submodule url for 'modules/imagej2'
Synchronizing submodule url for 'imglib'
Synchronizing submodule url for 'modules/javassist'
Synchronizing submodule url for 'jsch'
Synchronizing submodule url for 'junit'
Synchronizing submodule url for 'jython'
Synchronizing submodule url for 'mpicbg'
Synchronizing submodule url for 'tcljava'
Synchronizing submodule url for 'weka'
++ git ls-files --stage
++ sed -n 's/^160000 .\{40\} 0.//p'
++ grep -v java/
+ SUBMODULES='modules/AutoComplete
modules/ImageJA
modules/RSyntaxTextArea
modules/Retrotranslator
modules/TrakEM2
modules/batik
modules/clojure
modules/commons-math
modules/ij-plugins
modules/image5d
modules/imagej2
modules/imglib
modules/javassist
modules/jsch
modules/junit
modules/jython
modules/mpicbg
modules/tcljava
modules/weka'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/AutoComplete
Submodule 'AutoComplete' () registered for path 'modules/AutoComplete'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/ImageJA
Submodule 'ImageJA' () registered for path 'modules/ImageJA'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/RSyntaxTextArea
Submodule 'RSyntaxTextArea' () registered for path 'modules/RSyntaxTextArea'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/Retrotranslator
Submodule 'Retrotranslator' () registered for path 'modules/Retrotranslator'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/TrakEM2
Submodule 'TrakEM2' () registered for path 'modules/TrakEM2'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/batik
Submodule 'batik' () registered for path 'modules/batik'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/clojure
Submodule 'clojure' () registered for path 'modules/clojure'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/commons-math
Submodule 'commons-math' () registered for path 'modules/commons-math'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/ij-plugins
Submodule 'ij-plugins' () registered for path 'modules/ij-plugins'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/image5d
Submodule 'modules/imagej5d' () registered for path 'modules/image5d'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/imagej2
Submodule 'modules/imagej2' () registered for path 'modules/imagej2'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/imglib
Submodule 'imglib' () registered for path 'modules/imglib'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/javassist
Submodule 'modules/javassist' () registered for path 'modules/javassist'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/jsch
Submodule 'jsch' () registered for path 'modules/jsch'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/junit
Submodule 'junit' () registered for path 'modules/junit'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/jython
Submodule 'jython' () registered for path 'modules/jython'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/mpicbg
Submodule 'mpicbg' () registered for path 'modules/mpicbg'
Submodule path 'modules/mpicbg': checked out 'e982ec5bd30c8dbe3a478e021ad577521490ae3e'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/tcljava
Submodule 'tcljava' () registered for path 'modules/tcljava'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/weka
Submodule 'weka' () registered for path 'modules/weka'
+ git submodule foreach 'git clean -dfx'
Entering 'java/win64'
Entering 'modules/AutoComplete'
Entering 'modules/ImageJA'
Entering 'modules/RSyntaxTextArea'
Entering 'modules/Retrotranslator'
Entering 'modules/TrakEM2'
Entering 'modules/batik'
Entering 'modules/clojure'
Entering 'modules/commons-math'
Entering 'modules/ij-plugins'
Entering 'modules/image5d'
Entering 'modules/imagej2'
Entering 'modules/imglib'
Entering 'modules/javassist'
Entering 'modules/jsch'
Entering 'modules/junit'
Entering 'modules/jython'
Entering 'modules/mpicbg'
Entering 'modules/tcljava'
Entering 'modules/weka'
[fiji-windows-full] $ sh -xe C:\Users\jenkins\AppData\Local\Temp\hudson8843831977209587353.sh
+ export PATH=/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin
+ PATH=/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin
+ sh -x ./Build.sh -Dminimaven.updateinterval=1 -- verbose=true
+ set -a
++ dirname ./Build.sh
+ CWD=.
++ sed -n 's/^.<version>\(.*\)<\/version>.*/\1/p'
+ VERSION=2.0.0-SNAPSHOT
+ FAKE_JAR=jars/fake-2.0.0-SNAPSHOT.jar
+ PATHSEP=:
++ uname -s
+ UNAME_S=MINGW32_NT-6.1
+ case "$UNAME_S" in
++ cd .
++ pwd
+ CWD=/c/jenkins/workspace/fiji-windows-full
+ PATHSEP=';'
+ case "$PROCESSOR_ARCHITEW6432" in
+ platform=win64
+ java_submodule=win64
+ exe=.exe
+ test -n win64
+ test -z ''
++ get_java_home
++ test -d ''
++ test -n win64
++ test -d /c/jenkins/workspace/fiji-windows-full/java/win64
+++ ls -t /c/jenkins/workspace/fiji-windows-full/java/win64
+++ head -n 1
++ echo /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ JAVA_HOME=/c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ test -z win64
+ test -f /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/lib/tools.jar
+ test -f /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/../lib/tools.jar
+ case "$JAVA_HOME" in
+ test -n /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ test -d /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ test -d /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ test -d /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/jre
+ export PATH=/c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/bin:/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin
+ PATH=/c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/bin:/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin
+ : build fake.jar, making sure javac is in the PATH
++ get_java_home
++ test -d /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
++ echo /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
++ get_java_home
++ test -d /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
++ echo /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ PATH=/c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/bin:/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin:/c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/bin:/c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/../bin
+ ensure_fake_is_built
++ need_to_build_fake
++ cd /c/jenkins/workspace/fiji-windows-full
++ test -f jars/fake-2.0.0-SNAPSHOT.jar
++ echo YesPlease
++ return
++ return
+ test -z YesPlease
+ cd /c/jenkins/workspace/fiji-windows-full
+ : blow previous builds away
+ rm -f jars/fake.jar
+ rm -rf src-plugins/fake/target/classes
+ mkdir -p src-plugins/fake/target/classes
+ : compile classes
++ find src-plugins/fake/ -name '*.java'
+ java -jar precompiled/javac.jar -source 1.5 -target 1.5 -classpath precompiled/javac.jar -d src-plugins/fake/target/classes src-plugins/fake/src/main/java/fiji/build/All.java src-plugins/fake/src/main/java/fiji/build/ByteCodeAnalyzer.java src-plugins/fake/src/main/java/fiji/build/CompileClass.java src-plugins/fake/src/main/java/fiji/build/CompileCProgram.java src-plugins/fake/src/main/java/fiji/build/CompileJar.java src-plugins/fake/src/main/java/fiji/build/CompileNativeLibrary.java src-plugins/fake/src/main/java/fiji/build/CopyJar.java src-plugins/fake/src/main/java/fiji/build/ExecuteProgram.java src-plugins/fake/src/main/java/fiji/build/Fake.java src-plugins/fake/src/main/java/fiji/build/FakeException.java src-plugins/fake/src/main/java/fiji/build/GlobFilter.java src-plugins/fake/src/main/java/fiji/build/minimaven/BuildEnvironment.java src-plugins/fake/src/main/java/fiji/build/minimaven/Coordinate.java src-plugins/fake/src/main/java/fiji/build/minimaven/JarClassLoader.java src-plugins/fake/src/main/java/fiji/build/minimaven/JavaCompiler.java src-plugins/fake/src/main/java/fiji/build/minimaven/POM.java src-plugins/fake/src/main/java/fiji/build/minimaven/ReadInto.java src-plugins/fake/src/main/java/fiji/build/minimaven/SnapshotPOMHandler.java src-plugins/fake/src/main/java/fiji/build/minimaven/VersionPOMHandler.java src-plugins/fake/src/main/java/fiji/build/MiniMaven.java src-plugins/fake/src/main/java/fiji/build/MultiIterable.java src-plugins/fake/src/main/java/fiji/build/ObsoleteClassFiles.java src-plugins/fake/src/main/java/fiji/build/ParallelMaker.java src-plugins/fake/src/main/java/fiji/build/Parser.java src-plugins/fake/src/main/java/fiji/build/Rule.java src-plugins/fake/src/main/java/fiji/build/Special.java src-plugins/fake/src/main/java/fiji/build/StreamDumper.java src-plugins/fake/src/main/java/fiji/build/SubFake.java src-plugins/fake/src/main/java/fiji/build/Util.java
+ : compile .jar using MiniMaven
+ cd src-plugins
+ java -Dij.dir=.. -classpath 'fake/target/classes;../precompiled/javac.jar' -DartifactId=fake fiji.build.MiniMaven jar
Compiling 29 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\fake
+ cp fake/target/fake-2.0.0-SNAPSHOT.jar ../jars/
+ case "$UNAME_S" in
++ cd /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
++ pwd -W
+ export JAVA_HOME=c:/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ JAVA_HOME=c:/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ sh /c/jenkins/workspace/fiji-windows-full/bin/ImageJ.sh --build -Dminimaven.updateinterval=1 -- verbose=true
Checking prerequisites of (fiji.build.All) all <- ImageJ fiji pom-fiji-plugins
Checking prerequisites of (fiji.build.ExecuteProgram) fiji <- ImageJ
Checking prerequisites of (fiji.build.ExecuteProgram) ImageJ <-
Building (fiji.build.ExecuteProgram) ImageJ <-
Executing: 'sh' 'bin/download-launchers.sh' 'snapshot' 'win64'
Executing (win32 on win64 using SYSWOW64\cmd.exe): 'C:\Windows\SYSWOW64\cmd.exe' '/C' 'sh' 'bin/download-launchers.sh' 'snapshot' 'win64'
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 341 100 341 0 0 1213 0 --:--:-- --:--:-- --:--:-- 2185
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 359 100 359 0 0 918 0 --:--:-- --:--:-- --:--:-- 2301
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 14791 100 14791 0 0 39442 0 --:--:-- --:--:-- --:--:-- 59164
Fixing jars/ij-launcher-2.0.0-SNAPSHOT.jar...
Processing 8 file(s) from jars\ij-launcher-2.0.0-SNAPSHOT.jar to jars\ij-launcher-2.0.0-SNAPSHOT.jar.new.
Transformed 4 file(s).
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
14 571k 14 84746 0 0 108k 0 0:00:05 --:--:-- 0:00:05 132k
64 571k 64 371k 0 0 204k 0 0:00:02 0:00:01 0:00:01 221k
100 571k 100 571k 0 0 261k 0 0:00:02 0:00:02 --:--:-- 279k
ImageJ is not up-to-date because C:\jenkins\workspace\fiji-windows-full\jars\fake-2.0.0-SNAPSHOT.jar is newer: Thu Jan 01 01:00:00 CET 1970 < Mon Dec 10 13:05:42 CET 2012
Checking prerequisites of (fiji.build.ExecuteProgram) ImageJ <-
Building (fiji.build.ExecuteProgram) fiji <- ImageJ
Executing: 'bin/copy-file.bsh' 'ImageJ' 'fiji'
Falling back to calling it with BeanShell (bsh.jar was not found in classpath)
java.io.IOException: Cannot run program "bin/copy-file.bsh" (in directory "."): CreateProcess error=193, %1 is not a valid Win32 application
at java.lang.ProcessBuilder.start(ProcessBuilder.java:460)
at java.lang.Runtime.exec(Runtime.java:593)
at fiji.build.Fake.execute(Fake.java:911)
at fiji.build.Fake.execute(Fake.java:842)
at fiji.build.ExecuteProgram.action(ExecuteProgram.java:73)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:263)
at fiji.build.Fake.main(Fake.java:60)
Caused by: java.io.IOException: CreateProcess error=193, %1 is not a valid Win32 application
at java.lang.ProcessImpl.create(Native Method)
at java.lang.ProcessImpl.<init>(ProcessImpl.java:81)
at java.lang.ProcessImpl.start(ProcessImpl.java:30)
at java.lang.ProcessBuilder.start(ProcessBuilder.java:453)
... 11 more
Program failed: 'bin/copy-file.bsh $PRE $TARGET'
java.io.IOException: Cannot run program "bin/copy-file.bsh" (in directory "."): CreateProcess error=193, %1 is not a valid Win32 application
in rule (fiji.build.ExecuteProgram) fiji <- ImageJ
in rule (fiji.build.All) all <- ImageJ fiji pom-fiji-plugins
Build step 'Execute shell' marked build as failure
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