[ImageJ-builds] Build failed in Jenkins: fiji-windows-core #158

Mon Aug 27 15:42:09 CDT 2012

See <https://qa.nest-initiative.org/job/fiji-windows-core/158/changes>

Changes:

[johannes.schindelin] Build.sh: use correct ij.dir

------------------------------------------
[...truncated 1070 lines...]
Colocalisation_Analysis not up-to-date because 42 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\Accumulator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\Algorithm.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\AutoThresholdRegression.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\CostesSignificanceTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\Histogram2D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\InputCheck.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\LiHistogram2D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\LiICQ.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\MandersColocalization.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\MissingPreconditionException.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\PearsonsCorrelation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\SpearmanRankCorrelation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\Colocalisation_Test.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\Colocalisation_Threshold.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\ColocImgLibGadgets.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\Coloc_2.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\DataContainer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\MaskFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\Statistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\ThresholdMode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\algorithm\math\ImageStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\predicate\MaskPredicate.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\predicate\Predicate.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\PredicateCursor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\TwinCursor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\EasyDisplay.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\NamedContainer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\PDFWriter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\ResultHandler.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\SingleWindowDisplay.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\ValueResult.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\Warning.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\ColocalisationTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\CostesSignificanceTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\ImprovedNoise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\LiICQTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\MandersColocalizationTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\MaskAndRoiTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\PearsonsCorrelationTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\SpearmanRankTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\StatisticsTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\TestImageAccessor.java)
Compiling 42 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-algorithms\2.0.0-SNAPSHOT\imglib2-algorithms-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\com\itextpdf\itextpdf\5.1.1\itextpdf-5.1.1.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\Accumulator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\Algorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\AutoThresholdRegression.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\CostesSignificanceTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\Histogram2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\InputCheck.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\LiHistogram2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\LiICQ.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\MandersColocalization.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\MissingPreconditionException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\PearsonsCorrelation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\algorithms\SpearmanRankCorrelation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\Colocalisation_Test.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\Colocalisation_Threshold.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\ColocImgLibGadgets.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\Coloc_2.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\DataContainer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\MaskFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\Statistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\gadgets\ThresholdMode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\algorithm\math\ImageStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\predicate\MaskPredicate.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\predicate\Predicate.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\PredicateCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\net\imglib2\TwinCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\EasyDisplay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\NamedContainer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\PDFWriter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\ResultHandler.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\SingleWindowDisplay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\ValueResult.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\Warning.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\ColocalisationTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\CostesSignificanceTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\ImprovedNoise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\LiICQTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\MandersColocalizationTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\MaskAndRoiTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\PearsonsCorrelationTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\SpearmanRankTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\StatisticsTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\tests\TestImageAccessor.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-algorithms\2.0.0-SNAPSHOT\imglib2-algorithms-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\com\itextpdf\itextpdf\5.1.1\itextpdf-5.1.1.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\SingleWindowDisplay.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Trying to download http://dev.loci.wisc.edu/maven2/releases/org/apache/commons/commons-math/3.0-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/org/apache/commons/commons-math/3.0-SNAPSHOT/maven-metadata.xml.sha1
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at java.net.URL.openStream(URL.java:1010)
	at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:408)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:305)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:263)
	at fiji.build.minimaven.POM.download(POM.java:104)
	at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:680)
	at fiji.build.minimaven.POM.getDependencies(POM.java:447)
	at fiji.build.minimaven.POM.getDependencies(POM.java:422)
	at fiji.build.minimaven.POM.upToDate(POM.java:116)
	at fiji.build.SubFake.buildPOM(SubFake.java:267)
	at fiji.build.SubFake.buildPOM(SubFake.java:255)
	at fiji.build.SubFake.action(SubFake.java:223)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:242)
	at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/org/apache/commons/commons-math/3.0-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/org/apache/commons/commons-math/3.0-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of commons-math
Parsing C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.pom
Parsing C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.pom
Parsing C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.pom
Trainable_Segmentation not up-to-date because 37 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\AttributeClassPair.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\BalancedRandomForest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\BalancedRandomTree.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\GiniFunction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\InformationGainFunction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\SplitFunction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\Splitter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\VotesCollector.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\Benchmark.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\DataCache.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\FastRandomForest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\FastRandomTree.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\FastRfBagging.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\FastRfUtils.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\SplitCriteria.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\VotesCollector.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\FeatureStack.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\FeatureStack3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\FeatureStackArray.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\filters\Entropy_Filter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\filters\Kuwahara.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\filters\Lipschitz_.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\ImageOverlay.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\AdjustedRandError.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\ClassificationStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\ClusteredWarpingMismatches.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\Metrics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\PixelError.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\RandError.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\WarpingError.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\WarpingResults.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\RoiListOverlay.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\Trainable_Segmentation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\utils\PrincipalComponentAnalysis.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\utils\Utils.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\WekaSegmentation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\Weka_Segmentation.java)
Compiling 37 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\Anisotropic_Diffusion_2D\target\Anisotropic_Diffusion_2D-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\Stitching_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\bio-formats\4.4-SNAPSHOT\bio-formats-4.4-20120628.152312-122.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.jar;C:\Users\jenkins\.m2\repository\org\apache\commons\commons-math\3.0-SNAPSHOT\commons-math-3.0-20120702.214056-1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\target\imagescience-2.4.0.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-algorithms\2.0.0-SNAPSHOT\imglib2-algorithms-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120824.082226-155.jar;C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.4-SNAPSHOT\loci_plugins-4.4-20120824.082409-144.jar;C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.4-SNAPSHOT\mdbtools-java-4.4-20120628.152154-132.jar;C:\Users\jenkins\.m2\repository\loci\metakit\4.4-SNAPSHOT\metakit-4.4-20120628.152303-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\essi-unidata\netcdf-java\4.0.41\netcdf-java-4.0.41.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120824.082257-155.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\poi-loci\4.4-SNAPSHOT\poi-loci-4.4-20120628.152218-132.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120824.082317-112.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\AttributeClassPair.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\BalancedRandomForest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\BalancedRandomTree.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\GiniFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\InformationGainFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\SplitFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\Splitter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\VotesCollector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\Benchmark.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\DataCache.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\FastRandomForest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\FastRandomTree.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\FastRfBagging.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\FastRfUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\SplitCriteria.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\VotesCollector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\FeatureStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\FeatureStack3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\FeatureStackArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\filters\Entropy_Filter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\filters\Kuwahara.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\filters\Lipschitz_.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\ImageOverlay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\AdjustedRandError.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\ClassificationStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\ClusteredWarpingMismatches.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\Metrics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\PixelError.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\RandError.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\WarpingError.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\WarpingResults.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\RoiListOverlay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\Trainable_Segmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\utils\PrincipalComponentAnalysis.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\utils\Utils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\WekaSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\Weka_Segmentation.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\Anisotropic_Diffusion_2D\target\Anisotropic_Diffusion_2D-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\Stitching_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\bio-formats\4.4-SNAPSHOT\bio-formats-4.4-20120628.152312-122.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.jar;C:\Users\jenkins\.m2\repository\org\apache\commons\commons-math\3.0-SNAPSHOT\commons-math-3.0-20120702.214056-1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\target\imagescience-2.4.0.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-algorithms\2.0.0-SNAPSHOT\imglib2-algorithms-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120824.082226-155.jar;C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.4-SNAPSHOT\loci_plugins-4.4-20120824.082409-144.jar;C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.4-SNAPSHOT\mdbtools-java-4.4-20120628.152154-132.jar;C:\Users\jenkins\.m2\repository\loci\metakit\4.4-SNAPSHOT\metakit-4.4-20120628.152303-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\essi-unidata\netcdf-java\4.0.41\netcdf-java-4.0.41.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120824.082257-155.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\poi-loci\4.4-SNAPSHOT\poi-loci-4.4-20120628.152218-132.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120824.082317-112.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
jep not up-to-date because 319 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\Diff.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DifferentiationVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\AdditionDiffRule.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\ChainRuleDiffRules.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\DivideDiffRule.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\MacroDiffRules.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\MacroFunctionDiffRules.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\MultiplyDiffRule.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\PassThroughDiffRule.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\PowerDiffRule.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\SubtractDiffRule.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DiffRulesI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DJep.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DPrintVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DSymbolTable.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DVariable.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DVariableFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\PartialDerivative.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GAdd.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GComparative.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GDivide.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GList.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GLogical.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GMod.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GMultiply.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GNot.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GPower.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GSubtract.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GUMinus.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\GOperatorSet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\GroupI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\GroupJep.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\AlgebraicExtension.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\BigReals.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\ExtendedFreeGroup.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\FreeGroup.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\Group.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\Integers.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\PermutationGroup.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\Quaternions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\Rationals.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\Reals.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\Zn.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\AbelianGroupI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\FieldI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\HasDivI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\HasListI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\HasModI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\HasPowerI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\IntegralDomainI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\OrderedSetI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\RingI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\PolynomialVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\values\AlgebraicExtensionElement.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\values\FreeGroupElement.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\values\HasComplexValueI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\values\Permutation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\values\Polynomial.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\values\Rational.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\jama\Inverse.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\jama\JamaUtil.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\jama\Rank.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\jama\Solve.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MArrayAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MAssign.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MDiff.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MIf.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MList.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MMap.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MPower.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MSum.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixEvaluator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixJep.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixNodeFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixOperatorSet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixPartialDerivative.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixPreprocessor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixSpecialEvaluationI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixVariable.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixVariableFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixVariableI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\nodeTypes\ASTMConstant.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\nodeTypes\ASTMFunNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\nodeTypes\ASTMVarNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\nodeTypes\MatrixNodeI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\SpecialPreProcessorI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\mrpe\MRpCommandList.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\mrpe\MRpEval.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\mrpe\MRpRes.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rewrite\AbstractRewrite.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rewrite\CollectPowers.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rewrite\ExpandBrackets.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rewrite\ExpandPower.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rewrite\RewriteRuleI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rewrite\RewriteVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rpe\RpCommand.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rpe\RpCommandList.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rpe\RpEval.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\AbstractPNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\Monomial.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\MutiableMonomial.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\MutiablePolynomial.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\PConstant.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\PFunction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\PNodeI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\Polynomial.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\PolynomialCreator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\POperator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\PVariable.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\Dimensions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\ArrayAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\BinaryOperatorI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Determinant.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Diagonal.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Ele.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\ElementComparative.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\ElementDivide.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\ElementMultiply.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\ExteriorProduct.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\GenMat.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\GetDiagonal.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Id.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Length.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\MAdd.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\MDivide.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\MDot.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\MMultiply.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\MSubtract.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\MUMinus.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\NaryOperatorI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Size.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Trace.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Transpose.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\UnaryOperatorI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\VEle.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\VList.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\VMap.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\VPower.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\VRange.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\VSum.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\values\Matrix.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\values\MatrixValueI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\values\MVector.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\values\Scaler.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\values\Tensor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\VectorEvaluator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\VectorJep.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\VOperatorSet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\BaseFormat.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\CommandVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\CommandVisitorI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\DeepCopyVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\DoNothingVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\ErrorCatchingVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\Eval.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Define.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\FromBase.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Max.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\MaxArg.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Min.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\MinArg.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Product.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Simpson.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Sum.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\SumType.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\ToBase.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Trapezium.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\XAssign.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\MacroFunction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\NodeFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\PrintVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\SimplificationVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\SubstitutionVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\TreeUtils.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XEvaluatorVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XJep.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XMath.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XOperator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XOperatorSet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\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kins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Abs.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Add.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcCosine.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcCosineH.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcSine.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcSineH.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcTangent.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcTangent2.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcTanH.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Arg.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Assign.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Binomial.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\CallbackEvaluationI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Ceil.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Comparative.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ComplexPFMC.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Conjugate.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Cosine.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\CosineH.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Cross.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Divide.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Dot.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Ele.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Exp.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Floor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\If.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Imaginary.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\List.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Logarithm.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Logical.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\LValueI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Modulus.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Multiply.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\NaturalLogarithm.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Not.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Polar.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\PostfixMathCommand.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\PostfixMathCommandI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Power.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Random.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Range.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Real.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Round.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Sine.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\SineH.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\SpecialEvaluationI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\SquareRoot.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Str.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Subtract.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Sum.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Tangent.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\TanH.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\UMinus.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\FunctionTable.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\JavaCharStream.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\JEP.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\JJTParserState.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\Node.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\Operator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\OperatorSet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ParseException.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\Parser.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ParserConstants.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ParserDumpVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ParserTokenManager.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ParserTreeConstants.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ParserVisitor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\SimpleNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\SymbolTable.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\Token.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\TokenMgrError.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\type\Complex.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\type\DoubleNumberFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\type\NumberFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\Variable.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\VariableFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\Console.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\Evaluator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\Fractal.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\FractalCanvas.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\FunctionPlotter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\GraphCanvas.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\LargeExpressionTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\SimpleTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\ThreadTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\ThreadTestThread.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jeptesting\AllTests.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jeptesting\BugsTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jeptesting\ComplexTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jeptesting\JEPTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jeptesting\LogarithmTest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jeptesting\NaturalLogarithmTest.java)
Compiling 319 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\jep
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\Diff.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DifferentiationVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\AdditionDiffRule.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\ChainRuleDiffRules.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\DivideDiffRule.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\MacroDiffRules.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\MacroFunctionDiffRules.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\MultiplyDiffRule.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\PassThroughDiffRule.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\PowerDiffRule.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\diffRules\SubtractDiffRule.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DiffRulesI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DJep.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DPrintVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DSymbolTable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DVariable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\DVariableFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\djep\PartialDerivative.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GAdd.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GComparative.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GDivide.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GList.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GLogical.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GMod.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GMultiply.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GNot.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GPower.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GSubtract.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\function\GUMinus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\GOperatorSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\GroupI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\GroupJep.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\AlgebraicExtension.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\BigReals.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\ExtendedFreeGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\FreeGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\Group.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\Integers.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\PermutationGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\Quaternions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\Rationals.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\Reals.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\groups\Zn.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\AbelianGroupI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\FieldI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\HasDivI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\HasListI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\HasModI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\HasPowerI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\IntegralDomainI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\OrderedSetI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\interfaces\RingI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\PolynomialVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\values\AlgebraicExtensionElement.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\values\FreeGroupElement.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\values\HasComplexValueI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\values\Permutation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\values\Polynomial.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\groupJep\values\Rational.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\jama\Inverse.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\jama\JamaUtil.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\jama\Rank.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\jama\Solve.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MArrayAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MAssign.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MDiff.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MIf.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MList.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MMap.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MPower.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\function\MSum.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixEvaluator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixJep.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixNodeFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixOperatorSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixPartialDerivative.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixPreprocessor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixSpecialEvaluationI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixVariable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixVariableFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\MatrixVariableI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\nodeTypes\ASTMConstant.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\nodeTypes\ASTMFunNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\nodeTypes\ASTMVarNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\nodeTypes\MatrixNodeI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\matrixJep\SpecialPreProcessorI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\mrpe\MRpCommandList.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\mrpe\MRpEval.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\mrpe\MRpRes.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rewrite\AbstractRewrite.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rewrite\CollectPowers.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rewrite\ExpandBrackets.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rewrite\ExpandPower.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rewrite\RewriteRuleI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rewrite\RewriteVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rpe\RpCommand.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rpe\RpCommandList.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\rpe\RpEval.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\AbstractPNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\Monomial.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\MutiableMonomial.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\MutiablePolynomial.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\PConstant.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\PFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\PNodeI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\Polynomial.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\PolynomialCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\POperator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\sjep\PVariable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\Dimensions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\ArrayAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\BinaryOperatorI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Determinant.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Diagonal.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Ele.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\ElementComparative.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\ElementDivide.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\ElementMultiply.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\ExteriorProduct.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\GenMat.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\GetDiagonal.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Id.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Length.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\MAdd.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\MDivide.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\MDot.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\MMultiply.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\MSubtract.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\MUMinus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\NaryOperatorI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Size.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Trace.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\Transpose.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\UnaryOperatorI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\VEle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\VList.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\VMap.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\VPower.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\VRange.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\function\VSum.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\values\Matrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\values\MatrixValueI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\values\MVector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\values\Scaler.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\values\Tensor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\VectorEvaluator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\VectorJep.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\vectorJep\VOperatorSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\BaseFormat.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\CommandVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\CommandVisitorI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\DeepCopyVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\DoNothingVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\ErrorCatchingVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\Eval.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Define.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\FromBase.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Max.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\MaxArg.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Min.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\MinArg.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Product.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Simpson.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Sum.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\SumType.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\ToBase.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\Trapezium.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\function\XAssign.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\MacroFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\NodeFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\PrintVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\SimplificationVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\SubstitutionVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\TreeUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XEvaluatorVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XJep.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XMath.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XOperator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XOperatorSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XSymbolTable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XVariable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djep\xjep\XVariableFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\AssignmentExample.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\BlockStatments.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\Console.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\DiffExample.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\DJepApplet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\DJepConsole.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\GroupConsole.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\JamaConsole.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\MatrixConsole.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\MatrixExample.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\MatrixSpeed.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\MRpDiffExample.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\MRpExample.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\MRpSpeed.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\MRpSurfExample.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\ObserverConsole.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\PrintExample.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\RpExample.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\RpSpeed.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\SJepConsole.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\VectorConsole.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\VectorExample.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\VectorPrint.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\XJepConsole.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepExamples\XJepExample.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepJUnit\AllTests.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepJUnit\DJepTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepJUnit\GroupJepTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepJUnit\JepTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepJUnit\MatrixJepTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepJUnit\MRpTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepJUnit\RewriteTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepJUnit\RpTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepJUnit\SJepTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepJUnit\VectorJepTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\lsmp\djepJUnit\XJepTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ASTConstant.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ASTFunNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ASTStart.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ASTVarNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\evaluation\CommandElement.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\evaluation\CommandEvaluator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\evaluation\ExpressionCompiler.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\EvaluatorI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\EvaluatorVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Abs.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Add.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcCosine.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcCosineH.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcSine.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcSineH.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcTangent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcTangent2.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ArcTanH.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Arg.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Assign.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Binomial.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\CallbackEvaluationI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Ceil.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Comparative.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\ComplexPFMC.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Conjugate.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Cosine.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\CosineH.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Cross.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Divide.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Dot.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Ele.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Exp.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Floor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\If.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Imaginary.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\List.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Logarithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Logical.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\LValueI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Modulus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Multiply.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\NaturalLogarithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Not.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Polar.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\PostfixMathCommand.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\PostfixMathCommandI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Power.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Random.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Range.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Real.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Round.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Sine.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\SineH.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\SpecialEvaluationI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\SquareRoot.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Str.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Subtract.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Sum.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\Tangent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\TanH.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\function\UMinus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\FunctionTable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\JavaCharStream.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\JEP.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\JJTParserState.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\Node.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\Operator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\OperatorSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ParseException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\Parser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ParserConstants.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ParserDumpVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ParserTokenManager.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ParserTreeConstants.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\ParserVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\SimpleNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\SymbolTable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\Token.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\TokenMgrError.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\type\Complex.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\type\DoubleNumberFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\type\NumberFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\Variable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jep\VariableFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\Console.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\Evaluator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\Fractal.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\FractalCanvas.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\FunctionPlotter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\GraphCanvas.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\LargeExpressionTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\SimpleTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\ThreadTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jepexamples\ThreadTestThread.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jeptesting\AllTests.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jeptesting\BugsTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jeptesting\ComplexTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jeptesting\JEPTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jeptesting\LogarithmTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\src\main\java\org\nfunk\jeptesting\NaturalLogarithmTest.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Image_Expression_Parser not up-to-date because 45 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibAbs.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibAdd.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibArcCosine.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibArcSine.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibArcTangent.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibArcTangent2.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibBandPassFilter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibCeil.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibComparison.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibCosine.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibDithering.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibDivide.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibExp.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibFloor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibFunction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibGaussConv.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibLog.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibLogical.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibModulus.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibMultiply.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibNormalize.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibPower.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibRound.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibSine.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibSquareRoot.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibSubtract.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibTangent.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibUMinus.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\SingleOperandAbstractFunction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\SingleOperandPixelBasedAbstractFunction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\TwoOperandsAbstractFunction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\TwoOperandsPixelBasedAbstractFunction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\ImgLibNumberFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\ImgLibOperatorSet.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\ImgLibParser.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\ImgLibUtils.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\test\TestImgLibAlgorithms.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\test\TestSingleOperandPixelBasedFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\test\TestSingleOperandPixelBasedOperators.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\test\TestTwoOperandsPixelBasedFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\test\TestTwoOperandsPixelBasedOperators.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\test\TestUtilities.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\process\IepGui.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\process\Image_Expression_Parser.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\process\Test_JEP.java)
Compiling 45 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\target\jep-2.4.1.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibAbs.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibAdd.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibArcCosine.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibArcSine.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibArcTangent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibArcTangent2.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibBandPassFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibCeil.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibComparison.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibCosine.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibDithering.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibDivide.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibExp.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibFloor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibGaussConv.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibLog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibLogical.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibModulus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibMultiply.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibNormalize.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibPower.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibRound.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibSine.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibSquareRoot.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibSubtract.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibTangent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\ImgLibUMinus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\SingleOperandAbstractFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\SingleOperandPixelBasedAbstractFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\TwoOperandsAbstractFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\function\TwoOperandsPixelBasedAbstractFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\ImgLibNumberFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\ImgLibOperatorSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\ImgLibParser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\ImgLibUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\test\TestImgLibAlgorithms.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\test\TestSingleOperandPixelBasedFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\test\TestSingleOperandPixelBasedOperators.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\test\TestTwoOperandsPixelBasedFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\test\TestTwoOperandsPixelBasedOperators.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\expressionparser\test\TestUtilities.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\process\IepGui.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\process\Image_Expression_Parser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\src\main\java\fiji\process\Test_JEP.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Image_Expression_Parser\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\jep\target\jep-2.4.1.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.8.1\junit-4.8.1.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
SPIM_Opener not up-to-date because 16 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Check_Directories.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Combine_SPIM_Projects.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Count_Files.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\DoubleSlider.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MaximumProjector.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MinimumProjector.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\OpenerGenericDialog.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Projector.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Rename.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMExperiment.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMRegularStack.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMStack.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMVirtualStack.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIM_Opener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\XMLReader.java)
Compiling 16 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Check_Directories.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Combine_SPIM_Projects.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Count_Files.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\DoubleSlider.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MaximumProjector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MinimumProjector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\OpenerGenericDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Projector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Rename.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMExperiment.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMRegularStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMVirtualStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIM_Opener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\XMLReader.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Parsing C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.pom
SPIM_Registration not up-to-date because 144 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Apply_External_Transformation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Bead_Registration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Multi_View_Deconvolution.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Multi_View_Fusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Regtest.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\FileOpenMenuEntry.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\GraphFrame.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\MouseListenerTimelapse.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\RegistrationStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\TimeLapseDisplay.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\ICP.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\PointMatchIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\SimplePointMatchIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\AbstractPointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\exception\NoSuitablePointsException.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LinkedPoint.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LocalCoordinateSystemPointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Matcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorSubsetMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Quaternion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SimpleMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SubsetMatcher.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\FixedModel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\RigidModelOld3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantAffineModel3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantFixedModel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantModel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel2D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantSimilarityModel3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\ModelPointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\LinearDistance.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\ManhattanDistance.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SimilarityMeasure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SquareDistance.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\SimplePointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\PointNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\TestPointDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\VirtualPointNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\ClusterReconstruction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\Blending.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimple.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimpleFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightenerFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\Entropy.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\EntropyFloatArray3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFast.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFastFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\FusionControl.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContent.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContentFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightenerFactory.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalell.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalellMaxWeight.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequential.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequentialDifferentOutput.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\PreDeconvolutionFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\SPIMImageFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserException.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserGeneral.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserObject.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserSPIM.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ImgLibSaver.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\IOFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ParsePattern.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ProgramConfiguration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\SPIMConfiguration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\TextFileAccess.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\XMLFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\Java3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\PointMatchGeneric.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\SketchTikZFileObject.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationPhaseCorrelation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationSPIM.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileSPIM.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\ExtractPSF.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonFFT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonMultiViewDeconvolution.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\AdjustInput.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\BayesMVDeconvolution.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Block.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\CUDAConvolution.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Deconvolver.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRInput.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\preprocessing\AutomaticAngleSetup.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\Reconstruction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\Bead.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadRegistration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadSegmentation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadStructure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatisticsImpl.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorPairWise.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\DoGMaximum.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\LaPlaceFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\RejectStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\AbstractDetection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystem3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystemSecure3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CorrespondenceExtraction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\ModelBased3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\SparseCorrespondenceExtraction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\Detection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionRegistration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionSegmentation.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionStructure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionView.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleiConfiguration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\Nucleus.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusIdentification.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusStructure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ComponentProperties.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ConnectedComponent.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewDataBeads.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewStructure.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\segmentation\InteractiveDoG.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\simulation\SimulateBeadImage.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\FastMatrix.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\FastMatrixN.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\JacobiDouble.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Line.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Plane.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Point3d.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Triangle.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\BeadTransformGroup.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Motion3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\PreviewRegistration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Viewer3dFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationFunctions.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationSketchTikZ.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizeBeads.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\util\TransformUtils.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\MultiChannel_SPIM_Registration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIMRegistrationAbstract.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration_File.java)
Compiling 144 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration
[-source, 1.5, -target, 1.5, -classpath, 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C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\exception\NoSuitablePointsException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LinkedPoint.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LocalCoordinateSystemPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Matcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorSubsetMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Quaternion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SimpleMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SubsetMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\FixedModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\RigidModelOld3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantAffineModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantFixedModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantSimilarityModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\ModelPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\LinearDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\ManhattanDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SimilarityMeasure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SquareDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\SimplePointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\PointNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\TestPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\VirtualPointNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\ClusterReconstruction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\Blending.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimple.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimpleFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightenerFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\Entropy.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\EntropyFloatArray3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFast.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFastFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\FusionControl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContentFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightenerFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalell.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalellMaxWeight.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequential.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequentialDifferentOutput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\PreDeconvolutionFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\SPIMImageFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserGeneral.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ImgLibSaver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\IOFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ParsePattern.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ProgramConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\SPIMConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\TextFileAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\XMLFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\Java3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\PointMatchGeneric.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\SketchTikZFileObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationPhaseCorrelation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\ExtractPSF.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonFFT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonMultiViewDeconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\AdjustInput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\BayesMVDeconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Block.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\CUDAConvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Deconvolver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRInput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\preprocessing\AutomaticAngleSetup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\Reconstruction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\Bead.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatisticsImpl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorPairWise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\DoGMaximum.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\LaPlaceFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\RejectStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\AbstractDetection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystem3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystemSecure3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CorrespondenceExtraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\ModelBased3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\SparseCorrespondenceExtraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\Detection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleiConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\Nucleus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ComponentProperties.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ConnectedComponent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewDataBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\segmentation\InteractiveDoG.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\simulation\SimulateBeadImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\FastMatrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\FastMatrixN.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\JacobiDouble.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Line.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Plane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Point3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Triangle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\BeadTransformGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Motion3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\PreviewRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Viewer3dFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationSketchTikZ.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizeBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\util\TransformUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\MultiChannel_SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIMRegistrationAbstract.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration_File.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120824.082226-155.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120824.082257-155.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120824.082317-112.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Graph_Cut not up-to-date because 4 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Graph_Cut\src\main\java\graphcut\Graph.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Graph_Cut\src\main\java\graphcut\GraphCut.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Graph_Cut\src\main\java\graphcut\Graph_Cut.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Graph_Cut\src\main\java\graphcut\ImageOverlay.java)
Compiling 4 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Graph_Cut
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Graph_Cut\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Graph_Cut\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Graph_Cut\src\main\java\graphcut\Graph.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Graph_Cut\src\main\java\graphcut\GraphCut.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Graph_Cut\src\main\java\graphcut\Graph_Cut.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Graph_Cut\src\main\java\graphcut\ImageOverlay.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Graph_Cut\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
weave_jy2java not up-to-date because 1 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\weave_jy2java\src\main\java\fiji\scripting\Weaver.java)
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\weave_jy2java
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\weave_jy2java\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\target\BeanShell_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\target\CLI_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\target\Clojure_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter\target\JRuby_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_\target\Javascript_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter\target\Jython_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas\target\Refresh_Javas-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\target\Script_Editor-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\fifesoft\autocomplete\0.4\autocomplete-0.4.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\Users\jenkins\.m2\repository\org\clojure\clojure\1.3.0\clojure-1.3.0.jar;C:\Users\jenkins\.m2\repository\org\apache\commons\commons-math\3.0-SNAPSHOT\commons-math-3.0-20120702.214056-1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fake\target\fake-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\org\jruby\jruby\1.6.7.2\jruby-1.6.7.2.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;C:\Users\jenkins\.m2\repository\com\fifesoft\rsyntaxtextarea\1.4.1\rsyntaxtextarea-1.4.1.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\weave_jy2java\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\weave_jy2java\src\main\java\fiji\scripting\Weaver.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\weave_jy2java\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\target\BeanShell_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\target\CLI_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\target\Clojure_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter\target\JRuby_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_\target\Javascript_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter\target\Jython_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas\target\Refresh_Javas-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\target\Script_Editor-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\fifesoft\autocomplete\0.4\autocomplete-0.4.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\Users\jenkins\.m2\repository\org\clojure\clojure\1.3.0\clojure-1.3.0.jar;C:\Users\jenkins\.m2\repository\org\apache\commons\commons-math\3.0-SNAPSHOT\commons-math-3.0-20120702.214056-1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fake\target\fake-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\org\jruby\jruby\1.6.7.2\jruby-1.6.7.2.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;C:\Users\jenkins\.m2\repository\com\fifesoft\rsyntaxtextarea\1.4.1\rsyntaxtextarea-1.4.1.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\weave_jy2java\src\main\java\fiji\scripting\Weaver.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing C:\Users\jenkins\.m2\repository\org\jfree\jcommon\1.0.17\jcommon-1.0.17.pom
Parsing C:\Users\jenkins\.m2\repository\org\jdom\jdom-contrib\1.1.3\jdom-contrib-1.1.3.pom
Parsing C:\Users\jenkins\.m2\repository\org\jdom\jdom\1.1.3\jdom-1.1.3.pom
Parsing C:\Users\jenkins\.m2\repository\org\jfree\jfreechart\1.0.14\jfreechart-1.0.14.pom
Parsing C:\Users\jenkins\.m2\repository\javax\servlet\servlet-api\2.5\servlet-api-2.5.pom
Parsing C:\Users\jenkins\.m2\repository\com\lowagie\itext\2.1.5\itext-2.1.5.pom
Parsing C:\Users\jenkins\.m2\repository\bouncycastle\bcmail-jdk14\138\bcmail-jdk14-138.pom
Parsing C:\Users\jenkins\.m2\repository\bouncycastle\bcprov-jdk14\138\bcprov-jdk14-138.pom
Parsing C:\Users\jenkins\.m2\repository\jgrapht\jgrapht-jdk1.6\0.8.1\jgrapht-jdk1.6-0.8.1.pom
Parsing C:\Users\jenkins\.m2\repository\jgraph\jgraphx\1.10.0.3\jgraphx-1.10.0.3.pom
TrackMate_ not up-to-date because 185 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\AbstractTMAction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\CaptureOverlayAction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\CopyOverlayAction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\ExportTracksToXML.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\ExtractTrackStackAction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\GrabSpotImageAction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\ISBIChallengeExporter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\LinkNew3DViewerAction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\PlotNSpotsVsTimeAction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\RadiusToEstimatedAction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\RecalculateFeatureAction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\ResetRadiusAction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\ResetSpotTimeFeatureAction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\action\TrackMateAction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\Dimension.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\FeatureFilter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\FeatureAnalyzer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\FeatureModel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\AbstractSpotFeatureAnalyzer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\BlobContrast.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\BlobContrastAndSNR.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\BlobDescriptiveStatistics.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\BlobMorphology.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\IndependentSpotFeatureAnalyzer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\RadiusEstimator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\SpotFeatureAnalyzer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\SpotIconGrabber.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\track\TrackBranchingAnalyzer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\track\TrackDurationAnalyzer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\track\TrackFeatureAnalyzer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\track\TrackSpeedStatisticsAnalyzer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\ActionChooserPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\ActionListenablePanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\BasicSegmenterConfigurationPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\DisplayerChoiceDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\DisplayerPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\FilterGuiPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\FilterPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\GuiReader.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\GuiSaver.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\ImagePlusChooser.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\InitFilterPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JNumericTextField.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JPanelColorByFeatureGUI.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JPanelFeaturePenalty.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JPanelFeatureSelectionGui.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JPanelTrackerSettingsMain.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LAPTrackerSettingsPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LaunchDisplayerDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\ListChooserPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LoadDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LogPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LogSegmenterConfigurationPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\NearestNeighborTrackerSettingsPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SaveDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SegmentationDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SegmenterChoiceDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SegmenterConfigurationPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SegmenterConfigurationPanelDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SimpleLAPTrackerSettingsPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SomeDialogDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SpotFilterDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\StartDialogPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackerChoiceDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackerConfigurationPanel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackerConfigurationPanelDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackFilterDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackingDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackMateWizard.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\WizardController.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\WizardPanelDescriptor.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\InfoTextable.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\io\TmXmlKeys.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\io\TmXmlReader.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\io\TmXmlWriter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\Logger.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\AbstractSpotSegmenter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\tr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mate\tracking\costfunction\MergingCostFunction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\SplittingCostFunction.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\CostMatrixCreator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\LAPTrackerCostMatrixCreator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\LinkingCostMatrixCreator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\TrackSegmentCostMatrixCreator.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\FastLAPTracker.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\AssignmentAlgorithm.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\AssignmentProblem.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\HungarianAlgorithm.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\MunkresKuhnAlgorithm.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\kdtree\NearestNeighborTracker.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\kdtree\NearestNeighborTrackerSettings.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\kdtree\SpotNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\LAPTracker.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\LAPTrackerSettings.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\LAPUtils.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\SimpleFastLAPTracker.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\SimpleLAPTracker.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\SpotTracker.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\TrackerSettings.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateModel.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateModelChangeEvent.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateModelChangeListener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateSelectionChangeEvent.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateSelectionChangeListener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMate_.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\util\DefaultFileFilter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\util\TMUtils.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\util\TrackSplitter.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\AbstractTrackMateModelView.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\HyperStackDisplayer.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\SpotEditTool.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\SpotOverlay.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\TrackOverlay.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\threedviewer\SpotDisplayer3D.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\threedviewer\SpotGroupNode.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\t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Compiling 185 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_
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C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\Dimension.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\FeatureFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\FeatureAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\FeatureModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\AbstractSpotFeatureAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\BlobContrast.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\BlobContrastAndSNR.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\BlobDescriptiveStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\BlobMorphology.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\IndependentSpotFeatureAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\RadiusEstimator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\SpotFeatureAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\spot\SpotIconGrabber.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\track\TrackBranchingAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\track\TrackDurationAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\track\TrackFeatureAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\features\track\TrackSpeedStatisticsAnalyzer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\ActionChooserPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\ActionListenablePanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\BasicSegmenterConfigurationPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\DisplayerChoiceDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\DisplayerPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\FilterGuiPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\FilterPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\GuiReader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\GuiSaver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\ImagePlusChooser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\InitFilterPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JNumericTextField.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JPanelColorByFeatureGUI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JPanelFeaturePenalty.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JPanelFeatureSelectionGui.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\JPanelTrackerSettingsMain.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LAPTrackerSettingsPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LaunchDisplayerDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\ListChooserPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LoadDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LogPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\LogSegmenterConfigurationPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\NearestNeighborTrackerSettingsPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SaveDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SegmentationDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SegmenterChoiceDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SegmenterConfigurationPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SegmenterConfigurationPanelDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SimpleLAPTrackerSettingsPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SomeDialogDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\SpotFilterDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\StartDialogPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackerChoiceDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackerConfigurationPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackerConfigurationPanelDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackFilterDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackingDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\TrackMateWizard.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\WizardController.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\gui\WizardPanelDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\InfoTextable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\io\TmXmlKeys.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\io\TmXmlReader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\io\TmXmlWriter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\Logger.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\AbstractSpotSegmenter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\BasicSegmenterSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\DogSegmenter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\DownSampleLogSegmenter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\DownSampleLogSegmenterConfigurationPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\DownSampleLogSegmenterSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\LogSegmenter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\LogSegmenterSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\ManualSegmenter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\SegmenterSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\segmentation\SpotSegmenter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\Settings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\Spot.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\SpotCollection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\SpotImp.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\ClassNames_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\ConcurrentSpotTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\DogSegmenterTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\GUIReader_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\HangingTracking_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\HyperStackDisplayerTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\JPanelTrackerSettings_Test.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\LAPTrackerTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\LogSegmenterTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\MultiThread_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\NNTrackerTest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\PeakPickerSegmenterTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\RadiusEstimator_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\SingleFrame_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\SpotDisplayer3DTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\SpotFeatureGrapher_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\SpotGroupNodeTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\TmXmlReaderTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\TrackMateModel_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\TrackMate_TestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tests\TrackVisualizerTestDrive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\CostFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\GapClosingCostFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\LinkingCostFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\MergingCostFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\SplittingCostFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\CostMatrixCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\LAPTrackerCostMatrixCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\LinkingCostMatrixCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\TrackSegmentCostMatrixCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\FastLAPTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\AssignmentAlgorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\AssignmentProblem.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\HungarianAlgorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\MunkresKuhnAlgorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\kdtree\NearestNeighborTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\kdtree\NearestNeighborTrackerSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\kdtree\SpotNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\LAPTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\LAPTrackerSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\LAPUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\SimpleFastLAPTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\SimpleLAPTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\SpotTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\TrackerSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateModelChangeEvent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateModelChangeListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateSelectionChangeEvent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateSelectionChangeListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMate_.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\util\DefaultFileFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\util\TMUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\util\TrackSplitter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\AbstractTrackMateModelView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\HyperStackDisplayer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\SpotEditTool.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\SpotOverlay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\TrackOverlay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\threedviewer\SpotDisplayer3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\threedviewer\SpotGroupNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\threedviewer\TrackDisplayNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\TrackMateModelView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\TrackMateSelectionView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\FeaturePlotSelectionPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\InfoPane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\JGraphXAdapter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxScaledLabelShape.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxSideTextShape.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxTrackGraphComponent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxTrackGraphLayout.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxTrackSchemeSvgCanvas.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\SaveAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\SpotFeatureGrapher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\SpotImageUpdater.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\TrackSchemeFrame.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\TrackSchemePopupMenu.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\TrackSchemeToolbar.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\XYEdgeRenderer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\XYEdgeSeries.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\XYEdgeSeriesCollection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\algorithm\gauss\DifferenceOfGaussianRealNI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\algorithm\laplace\LoGKernelFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\AbstractSpecialCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\CoordsCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\DiscCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\DomainCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\SphereCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\Utils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\chart\annotations\XYTextSimpleAnnotation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\chart\ExportableChartPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\chart\renderer\InterpolatePaintScale.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\chart\util\ChartExporter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\data\statistics\LogHistogramDataset.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\batik\batik\1.8\batik-1.8.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcmail-jdk14\138\bcmail-jdk14-138.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcprov-jdk14\138\bcprov-jdk14-138.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\com\lowagie\itext\2.1.5\itext-2.1.5.jar;C:\Users\jenkins\.m2\repository\com\itextpdf\itextpdf\5.1.1\itextpdf-5.1.1.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\org\jfree\jcommon\1.0.17\jcommon-1.0.17.jar;C:\Users\jenkins\.m2\repository\org\jdom\jdom\1.1.3\jdom-1.1.3.jar;C:\Users\jenkins\.m2\repository\org\jdom\jdom-contrib\1.1.3\jdom-contrib-1.1.3.jar;C:\Users\jenkins\.m2\repository\org\jfree\jfreechart\1.0.14\jfreechart-1.0.14.jar;C:\Users\jenkins\.m2\repository\jgrapht\jgrapht-jdk1.6\0.8.1\jgrapht-jdk1.6-0.8.1.jar;C:\Users\jenkins\.m2\repository\jgraph\jgraphx\1.10.0.3\jgraphx-1.10.0.3.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120824.082226-155.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120824.082257-155.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120824.082317-112.jar;C:\Users\jenkins\.m2\repository\javax\servlet\servlet-api\2.5\servlet-api-2.5.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\xml-apis\xml-apis\1.3.04\xml-apis-1.3.04.jar
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/loci-common/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/loci-common/4.4-SNAPSHOT/maven-metadata.xml.sha1
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at java.net.URL.openStream(URL.java:1010)
	at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:408)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:305)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:263)
	at fiji.build.minimaven.POM.download(POM.java:104)
	at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:680)
	at fiji.build.minimaven.POM.getDependencies(POM.java:447)
	at fiji.build.minimaven.POM.getDependencies(POM.java:459)
	at fiji.build.minimaven.POM.getDependencies(POM.java:422)
	at fiji.build.minimaven.POM.upToDate(POM.java:116)
	at fiji.build.SubFake.buildPOM(SubFake.java:267)
	at fiji.build.SubFake.buildPOM(SubFake.java:255)
	at fiji.build.SubFake.action(SubFake.java:223)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:242)
	at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci-common/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci-common/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of loci-common
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/loci_plugins/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/loci_plugins/4.4-SNAPSHOT/maven-metadata.xml.sha1
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at java.net.URL.openStream(URL.java:1010)
	at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:408)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:305)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:263)
	at fiji.build.minimaven.POM.download(POM.java:104)
	at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:680)
	at fiji.build.minimaven.POM.getDependencies(POM.java:447)
	at fiji.build.minimaven.POM.getDependencies(POM.java:459)
	at fiji.build.minimaven.POM.getDependencies(POM.java:422)
	at fiji.build.minimaven.POM.upToDate(POM.java:116)
	at fiji.build.SubFake.buildPOM(SubFake.java:267)
	at fiji.build.SubFake.buildPOM(SubFake.java:255)
	at fiji.build.SubFake.action(SubFake.java:223)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:242)
	at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci_plugins/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci_plugins/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of loci_plugins
Trying to download http://dev.loci.wisc.edu/maven2/releases/net/imagej/ij/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/releases/net/imagej/ij/maven-metadata.xml
Checking for new version of ij
Descriptor_based_registration not up-to-date because 16 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\plugin\DescriptorParameters.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\plugin\Descriptor_based_registration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\plugin\Descriptor_based_series_registration.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\plugin\Manual_Landmark_Selection.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\ComparePair.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\Matching.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\OverlayFusion.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\Particle.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\DoneButtonListener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\ExtendedPointMatch.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\ListListener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\LoadListener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\Match.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\RemoveItemListener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\SaveListener.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\Select_Points.java)
Compiling 16 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\SPIM_Registration-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\Stitching_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\bio-formats\4.4-SNAPSHOT\bio-formats-4.4-20120628.152312-122.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120824.082226-155.jar;C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.4-SNAPSHOT\loci_plugins-4.4-20120824.082409-144.jar;C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.4-SNAPSHOT\mdbtools-java-4.4-20120628.152154-132.jar;C:\Users\jenkins\.m2\repository\loci\metakit\4.4-SNAPSHOT\metakit-4.4-20120628.152303-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\essi-unidata\netcdf-java\4.0.41\netcdf-java-4.0.41.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120824.082257-155.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\poi-loci\4.4-SNAPSHOT\poi-loci-4.4-20120628.152218-132.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120824.082317-112.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\plugin\DescriptorParameters.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\plugin\Descriptor_based_registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\plugin\Descriptor_based_series_registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\plugin\Manual_Landmark_Selection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\ComparePair.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\Matching.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\OverlayFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\Particle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\DoneButtonListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\ExtendedPointMatch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\ListListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\LoadListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\Match.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\RemoveItemListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\SaveListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\selection\Select_Points.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\SPIM_Registration-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\Stitching_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\bio-formats\4.4-SNAPSHOT\bio-formats-4.4-20120628.152312-122.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120824.082226-155.jar;C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.4-SNAPSHOT\loci_plugins-4.4-20120824.082409-144.jar;C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.4-SNAPSHOT\mdbtools-java-4.4-20120628.152154-132.jar;C:\Users\jenkins\.m2\repository\loci\metakit\4.4-SNAPSHOT\metakit-4.4-20120628.152303-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\essi-unidata\netcdf-java\4.0.41\netcdf-java-4.0.41.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120824.082257-155.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\poi-loci\4.4-SNAPSHOT\poi-loci-4.4-20120628.152218-132.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120824.082317-112.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\Matching.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Fiji_Package_Maker not up-to-date because 6 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\Packager.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\Package_Maker.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\TarBz2Packager.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\TarGzPackager.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\TarPackager.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\ZipPackager.java)
Compiling 6 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\target\Fiji_Updater-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\Packager.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\Package_Maker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\TarBz2Packager.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\TarGzPackager.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\TarPackager.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\ZipPackager.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\target\Fiji_Updater-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Package_Maker\src\main\java\fiji\packaging\TarBz2Packager.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/ome-xml/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/ome-xml/4.4-SNAPSHOT/maven-metadata.xml.sha1
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at java.net.URL.openStream(URL.java:1010)
	at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:408)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:305)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:263)
	at fiji.build.minimaven.POM.download(POM.java:104)
	at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:680)
	at fiji.build.minimaven.POM.getDependencies(POM.java:447)
	at fiji.build.minimaven.POM.getDependencies(POM.java:422)
	at fiji.build.minimaven.POM.upToDate(POM.java:116)
	at fiji.build.SubFake.buildPOM(SubFake.java:267)
	at fiji.build.SubFake.buildPOM(SubFake.java:255)
	at fiji.build.SubFake.buildPOM(SubFake.java:255)
	at fiji.build.SubFake.action(SubFake.java:223)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:242)
	at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/ome-xml/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/ome-xml/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of ome-xml
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at java.net.URL.openStream(URL.java:1010)
	at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:408)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:305)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:263)
	at fiji.build.minimaven.POM.download(POM.java:104)
	at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:680)
	at fiji.build.minimaven.POM.getDependencies(POM.java:447)
	at fiji.build.minimaven.POM.getDependencies(POM.java:422)
	at fiji.build.minimaven.POM.upToDate(POM.java:116)
	at fiji.build.SubFake.buildPOM(SubFake.java:267)
	at fiji.build.SubFake.buildPOM(SubFake.java:255)
	at fiji.build.SubFake.buildPOM(SubFake.java:255)
	at fiji.build.SubFake.action(SubFake.java:223)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:242)
	at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of scifio
Updater_Fix not up-to-date because 2 source files are not up-to-date (C:\jenkins\workspace\fiji-windows-core\src-plugins\Updater_Fix\src\main\java\fiji\updater\BinaryPList.javaC:\jenkins\workspace\fiji-windows-core\src-plugins\Updater_Fix\src\main\java\fiji\updater\Fix.java)
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Updater_Fix
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Updater_Fix\target\classes, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Updater_Fix\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Updater_Fix\src\main\java\fiji\updater\BinaryPList.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Updater_Fix\src\main\java\fiji\updater\Fix.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Updater_Fix\target\classes
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Updater_Fix\src\main\java\fiji\updater\BinaryPList.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.ExecuteProgram) fiji <- ImageJ
Checking prerequisites of (fiji.build.ExecuteProgram) ImageJ <- plugins/Fiji_Update...
Building (fiji.build.ExecuteProgram) fiji <- ImageJ
Executing: 'bin/copy-file.bsh' 'ImageJ' 'fiji'
Falling back to calling it with BeanShell (bsh.jar was not found in classpath)
java.io.IOException: Cannot run program "bin/copy-file.bsh" (in directory "."): CreateProcess error=193, %1 is not a valid Win32 application
	at java.lang.ProcessBuilder.start(ProcessBuilder.java:460)
	at java.lang.Runtime.exec(Runtime.java:593)
	at fiji.build.Fake.execute(Fake.java:890)
	at fiji.build.Fake.execute(Fake.java:821)
	at fiji.build.ExecuteProgram.action(ExecuteProgram.java:73)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:242)
	at fiji.build.Fake.main(Fake.java:56)
Caused by: java.io.IOException: CreateProcess error=193, %1 is not a valid Win32 application
	at java.lang.ProcessImpl.create(Native Method)
	at java.lang.ProcessImpl.<init>(ProcessImpl.java:81)
	at java.lang.ProcessImpl.start(ProcessImpl.java:30)
	at java.lang.ProcessBuilder.start(ProcessBuilder.java:453)
	... 11 more
Program failed: 'bin/copy-file.bsh $PRE $TARGET'
java.io.IOException: Cannot run program "bin/copy-file.bsh" (in directory "."): CreateProcess error=193, %1 is not a valid Win32 application
	in rule (fiji.build.ExecuteProgram) fiji <- ImageJ
	in rule (fiji.build.All) all <- ImageJ fiji pom-fiji-plugins
Build step 'Execute shell' marked build as failure