[ImageJ-builds] Build failed in Jenkins: fiji-full #455

[Jenkins Daemon]

See <https://qa.nest-initiative.org/job/fiji-full/455/changes>

Changes:

[stephan.preibisch] Deconvolution works as chunk or in blocks, ready for CUDA

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Checking prerequisites of (fiji.build.SubFake) plugins/Skeletonize3D_.jar <- src-pl...
Building (fiji.build.SubFake) plugins/Skeletonize3D_.jar <- src-pl...
Parsing src-plugins/Skeletonize3D_/pom.xml
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Skeletonize3D_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Skeletonize3D_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Skeletonize3D_/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Skeletonize3D_/src/main/java/Skeletonize3D_/Skeletonize3D_.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Skeletonize3D_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/BalloonSegmentation_.jar <- ...
Building (fiji.build.SubFake) plugins/BalloonSegmentation_.jar <- ...
Parsing src-plugins/BalloonSegmentation_/pom.xml
Compiling 9 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/classes,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/src/main/java/Jama/Matrix.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/src/main/java/Jama/SingularValueDecomposition.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/src/main/java/Jama/CholeskyDecomposition.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/src/main/java/Jama/util/Maths.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/src/main/java/Jama/examples/MagicSquareExample.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/src/main/java/Jama/QRDecomposition.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/src/main/java/Jama/LUDecomposition.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/src/main/java/Jama/EigenvalueDecomposition.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/src/main/java/Jama/test/TestMatrix.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/classes>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/src/main/java/Jama/Matrix.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 8 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/Jama-1.0.2.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_/src/main/java/utils/CenterlineSlice.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_/src/main/java/utils/Watershed.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_/src/main/java/utils/Kinematics.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_/src/main/java/utils/RandPermutation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/BalloonSequence.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/BalloonPopulation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/Balloon.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/Jama-1.0.2.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/panorama_.jar <- src-plugins...
Building (fiji.build.SubFake) plugins/panorama_.jar <- src-plugins...
Parsing src-plugins/panorama_/pom.xml
Parsing /home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.pom
Parsing /home/jenkins/.m2/repository/mpicbg/mpicbg_/2.0.0-SNAPSHOT/mpicbg_-2.0.0-20120704.040457-1.pom
Compiling 6 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/panorama_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/panorama_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:/home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg_/2.0.0-SNAPSHOT/mpicbg_-2.0.0-20120704.040457-1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/panorama_/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/panorama_/src/main/java/mpicbg/panorama/EquirectangularPanorama_View.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/panorama_/src/main/java/mpicbg/panorama/HomogeneousMapping.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/panorama_/src/main/java/mpicbg/panorama/EquirectangularProjection.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/panorama_/src/main/java/mpicbg/panorama/RectlinearCamera.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/panorama_/src/main/java/mpicbg/panorama/Panorama_View.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/panorama_/src/main/java/mpicbg/panorama/PanoramaCamera.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/panorama_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:/home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg_/2.0.0-SNAPSHOT/mpicbg_-2.0.0-20120704.040457-1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Checking prerequisites of (fiji.build.SubFake) plugins/Arrow_.jar <- src-plugins/Ar...
Building (fiji.build.SubFake) plugins/Arrow_.jar <- src-plugins/Ar...
Parsing src-plugins/Arrow_/pom.xml
Compiling 26 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/ij/gui/ShapeRoiHelper.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/statistics/RoiStatistics.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/IntArray.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/TicToc.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/DoubleArray.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/ArrayBase.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/MenuItemDiverter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/SplitString.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/FloatArray.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/MenuItemHelper.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/Levenshtein.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/JFrameCommandFinder.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/GenericDialogPlus.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/CommandFinderBase.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/OverlayedImageCanvas.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/JImagePanel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/AbstractAnnotation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/debugging/Object_Inspector.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/SliceListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/AbstractTool.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/ToolWithOptions.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/ToolToggleListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/SliceObserver.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/AbstractTrackingTool.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/Debug.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/JNI.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/JFrameCommandFinder.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Arrow_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Arrow_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Arrow_/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Arrow_/src/main/java/fiji/util/ArrowShape.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Arrow_/src/main/java/fiji/util/ArrowTool.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Arrow_/src/main/java/fiji/util/ArrowOptionPanel.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Arrow_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/Color_Histogram.jar <- src-p...
Building (fiji.build.SubFake) plugins/Color_Histogram.jar <- src-p...
Parsing src-plugins/Color_Histogram/pom.xml
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Color_Histogram>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Color_Histogram/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Color_Histogram/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Color_Histogram/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Checking prerequisites of (fiji.build.SubFake) plugins/mpicbg_.jar <- jars/ij.jar j...
Checking prerequisites of (fiji.build.SubFake) jars/ij.jar <- jars/javac.jar module...
Checking prerequisites of (fiji.build.SubFake) jars/javac.jar <- src-plugins/javac/
Building (fiji.build.SubFake) jars/javac.jar <- src-plugins/javac/
Parsing src-plugins/javac/pom.xml
Compiling 250 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/target/classes,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/TypeVariable.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/ReferenceType.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/TypeVisitor.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/NullType.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/TypeMirror.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/PrimitiveType.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/MirroredTypesException.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/NoType.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/ArrayType.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/ExecutableType.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/DeclaredType.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/ErrorType.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/UnknownTypeException.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/src/main/java/javax/lang/model/type/WildcardType.java,> 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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/javac/target/classes>
Parsing modules/ImageJA/pom.xml
Checking prerequisites of (fiji.build.SubFake) jars/mpicbg.jar <- jars/ij.jar jars/...
Checking prerequisites of (fiji.build.SubFake) jars/Jama.jar <- src-plugins/Jama/
Parsing src-plugins/Jama/pom.xml
mpicbg.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.SubFake) jars/mpicbg.jar <- jars/ij.jar jars/...
Building in modules/mpicbg/
Checking prerequisites of (fiji.build.CompileJar) mpicbg.jar <- mpicbg/models/Bound...
mpicbg.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) mpicbg.jar <- mpicbg/models/Bound...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-full/ws/build/jars/mpicbg/mpicbg> -source 1.6 -target 1.6 -classpath jars/ij.jar:jars/Jama.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext ./modules/mpicbg/mpicbg/models/Boundable.java ./modules/mpicbg/mpicbg/ij/integral/InteractiveSquarePMCC.java ./modules/mpicbg/mpicbg/models/TileConfiguration.java ./modules/mpicbg/mpicbg/ij/integral/InteractiveVariance.java ./modules/mpicbg/mpicbg/models/InvertibleInterpolatedModel.java ./modules/mpicbg/mpicbg/ij/clahe/ByteApply.java ./modules/mpicbg/mpicbg/models/TranslationModel2D.java ./modules/mpicbg/mpicbg/models/Transforms.java ./modules/mpicbg/mpicbg/models/AbstractAffineModel2D.java ./modules/mpicbg/mpicbg/ij/integral/InteractiveTilt.java ./modules/mpicbg/mpicbg/models/ErrorStatistic.java ./modules/mpicbg/mpicbg/ij/integral/IntegralImage.java ./modules/mpicbg/mpicbg/ij/integral/LongRGBIntegralImage.java ./modules/mpicbg/mpicbg/util/RingBuffer.java ./modules/mpicbg/mpicbg/ij/stack/InverseTransformMapping.java ./modules/mpicbg/mpicbg/ij/clahe/PlugIn.java ./modules/mpicbg/mpicbg/ij/InvertibleTransformMapping.java ./modules/mpicbg/mpicbg/ij/integral/Tilt.java ./modules/mpicbg/mpicbg/ij/clahe/FloatApply.java ./modules/mpicbg/mpicbg/models/MovingLeastSquaresMesh.java ./modules/mpicbg/mpicbg/models/InvertibleCoordinateTransformList.java ./modules/mpicbg/mpicbg/models/InverseCoordinateTransformMap2D.java ./modules/mpicbg/mpicbg/models/InterpolatedModel.java ./modules/mpicbg/mpicbg/models/TranslationModel3D.java ./modules/mpicbg/mpicbg/models/TransformList.java ./modules/mpicbg/mpicbg/models/InvertibleCoordinateTransform.java ./modules/mpicbg/mpicbg/models/InterpolatedAffineModel2D.java ./modules/mpicbg/mpicbg/models/SpringMesh.java ./modules/mpicbg/mpicbg/models/Tile.java ./modules/mpicbg/mpicbg/util/DCT.java ./modules/mpicbg/mpicbg/ij/integral/BlockStatistics.java ./modules/mpicbg/mpicbg/models/InverseCoordinateTransformList.java ./modules/mpicbg/mpicbg/models/NoninvertibleModelException.java ./modules/mpicbg/mpicbg/imagefeatures/FloatArray2DScaleOctaveDoGDetector.java ./modules/mpicbg/mpicbg/ij/MappingThread.java ./modules/mpicbg/mpicbg/models/TransformMeshMap2D.java ./modules/mpicbg/mpicbg/util/Util.java ./modules/mpicbg/mpicbg/ij/integral/NormalizeLocalContrast.java ./modules/mpicbg/mpicbg/models/Vertex.java ./modules/mpicbg/mpicbg/imagefeatures/Feature.java ./modules/mpicbg/mpicbg/ij/integral/DifferenceOfMean.java ./modules/mpicbg/mpicbg/ij/clahe/Util.java ./modules/mpicbg/mpicbg/imagefeatures/FloatArray2DMOPS.java ./modules/mpicbg/mpicbg/ij/integral/LongIntegralImage.java ./modules/mpicbg/mpicbg/ij/InvertibleMapping.java ./modules/mpicbg/mpicbg/models/SimilarityModel2D.java ./modules/mpicbg/mpicbg/ij/clahe/Flat.java ./modules/mpicbg/mpicbg/ij/integral/AbstractInteractiveBlockFilter.java ./modules/mpicbg/mpicbg/util/RealSum.java ./modules/mpicbg/mpicbg/models/MovingLeastSquaresTransform2.java ./modules/mpicbg/mpicbg/models/InvertibleBoundable.java ./modules/mpicbg/mpicbg/ij/integral/Util.java ./modules/mpicbg/mpicbg/ij/PaintInvertibleCoordinateTransformThread.java ./modules/mpicbg/mpicbg/models/AbstractAffineModel3D.java ./modules/mpicbg/mpicbg/models/InverseBoundable.java ./modules/mpicbg/mpicbg/models/RigidModel3D.java ./modules/mpicbg/mpicbg/ij/InteractiveMapping.java ./modules/mpicbg/mpicbg/ij/integral/InteractivePMCC.java ./modules/mpicbg/mpicbg/ij/Mapping.java ./modules/mpicbg/mpicbg/models/RigidModel2D.java ./modules/mpicbg/mpicbg/models/Affine2D.java ./modules/mpicbg/mpicbg/imagefeatures/FloatArray.java ./modules/mpicbg/mpicbg/models/Model.java ./modules/mpicbg/mpicbg/ij/stack/Mapping.java ./modules/mpicbg/mpicbg/imagefeatures/FloatArray2D.java ./modules/mpicbg/mpicbg/models/InterpolatedAffineModel3D.java ./modules/mpicbg/mpicbg/ij/integral/DoubleIntegralImage.java ./modules/mpicbg/mpicbg/ij/FeatureTransform.java ./modules/mpicbg/mpicbg/ij/util/Filter.java ./modules/mpicbg/mpicbg/models/MovingLeastSquaresTransform.java ./modules/mpicbg/mpicbg/models/ElasticMovingLeastSquaresMesh.java ./modules/mpicbg/mpicbg/imagefeatures/FloatArray2DSIFT.java ./modules/mpicbg/mpicbg/models/CoordinateTransform.java ./modules/mpicbg/mpicbg/imagefeatures/Filter.java ./modules/mpicbg/mpicbg/models/IllDefinedDataPointsException.java ./modules/mpicbg/mpicbg/ij/InverseMapping.java ./modules/mpicbg/mpicbg/ij/clahe/ShortApply.java ./modules/mpicbg/mpicbg/models/TransformMesh.java ./modules/mpicbg/mpicbg/models/AffineModel2D.java ./modules/mpicbg/mpicbg/models/CoordinateTransformList.java ./modules/mpicbg/mpicbg/ij/blockmatching/BlockMatching.java ./modules/mpicbg/mpicbg/util/Timer.java ./modules/mpicbg/mpicbg/models/Affine3D.java ./modules/mpicbg/mpicbg/ij/SIFT.java ./modules/mpicbg/mpicbg/ij/integral/Mean.java ./modules/mpicbg/mpicbg/ij/clahe/FastByteApply.java ./modules/mpicbg/mpicbg/ij/integral/InteractiveStandardDeviation.java ./modules/mpicbg/mpicbg/ij/integral/RemoveOutliers.java ./modules/mpicbg/mpicbg/ij/integral/Scale.java ./modules/mpicbg/mpicbg/ij/clahe/FastFlat.java ./modules/mpicbg/mpicbg/models/CoordinateTransformMap2D.java ./modules/mpicbg/mpicbg/util/Matrix3x3.java ./modules/mpicbg/mpicbg/ij/visualization/PointVis.java ./modules/mpicbg/mpicbg/ij/integral/BlockPMCC.java ./modules/mpicbg/mpicbg/models/PointMatch.java ./modules/mpicbg/mpicbg/ij/clahe/Apply.java ./modules/mpicbg/mpicbg/models/NotEnoughDataPointsException.java ./modules/mpicbg/mpicbg/ij/clahe/RGBApply.java ./modules/mpicbg/mpicbg/ij/integral/IntIntegralImage.java ./modules/mpicbg/mpicbg/ij/InverseTransformMapping.java ./modules/mpicbg/mpicbg/ij/integral/InteractiveScale.java ./modules/mpicbg/mpicbg/ij/TransformMeshMapping.java ./modules/mpicbg/mpicbg/imagefeatures/ImageArrayConverter.java ./modules/mpicbg/mpicbg/ij/integral/InteractiveDifferenceOfMean.java ./modules/mpicbg/mpicbg/models/CoordinateTransformMesh.java ./modules/mpicbg/mpicbg/ij/integral/InteractiveMean.java ./modules/mpicbg/mpicbg/imagefeatures/FloatArray2DScaleOctave.java ./modules/mpicbg/mpicbg/models/InverseCoordinateTransform.java ./modules/mpicbg/mpicbg/models/HomographyModel2D.java ./modules/mpicbg/mpicbg/models/AffineModel3D.java ./modules/mpicbg/mpicbg/ij/InteractiveInvertibleCoordinateTransform.java ./modules/mpicbg/mpicbg/models/AbstractModel.java ./modules/mpicbg/mpicbg/ij/util/Util.java ./modules/mpicbg/mpicbg/models/AbstractMovingLeastSquaresTransform.java ./modules/mpicbg/mpicbg/imagefeatures/FloatArray2DFeatureTransform.java ./modules/mpicbg/mpicbg/models/Spring.java ./modules/mpicbg/mpicbg/ij/MOPS.java ./modules/mpicbg/mpicbg/ij/TransformMapping.java ./modules/mpicbg/mpicbg/models/Point.java
Note: ./modules/mpicbg/mpicbg/ij/InteractiveInvertibleCoordinateTransform.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: ./modules/mpicbg/mpicbg/models/InvertibleCoordinateTransformList.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making ./modules/mpicbg/mpicbg.jar from <https://qa.nest-initiative.org/job/fiji-full/ws/build/jars/mpicbg/mpicbg/mpicbg/ij/FeatureTransform.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/jars/mpicbg/mpicbg/mpicbg/ij/InteractiveInvertibleCoordinateTransform$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/jars/mpicbg/mpicbg/mpicbg/ij/InteractiveInvertibleCoordinateTransform$Tuple.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/jars/mpicbg/mpicbg/mpicbg/ij/InteractiveInvertibleCoordinateTransform.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/jars/mpicbg/mpicbg/mpicbg/ij/InteractiveMapping.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/jars/mpicbg/mpicbg/mpicbg/ij/InverseMapping.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/jars/mpicbg/mpicbg/mpicbg/ij/InverseTransformMapping.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/jars/mpicbg/mpicbg/mpicbg/ij/InvertibleMapping.class> 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Leaving modules/mpicbg/
jars/mpicbg.jar is not up-to-date because modules/mpicbg/mpicbg.jar is newer: Fri Aug 10 17:27:14 CEST 2012 < Fri Aug 10 17:27:18 CEST 2012
mpicbg_.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.SubFake) plugins/mpicbg_.jar <- jars/ij.jar j...
Building in modules/mpicbg/
Checking prerequisites of (fiji.build.CompileJar) mpicbg_.jar <- mpicbg/ij/plugin/A...
mpicbg_.jar is not up-to-date because of jars/ij.jar
Building (fiji.build.CompileJar) mpicbg_.jar <- mpicbg/ij/plugin/A...
Compiling .java files: javac -encoding UTF8 -d <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_> -source 1.6 -target 1.6 -classpath jars/ij.jar:jars/mpicbg.jar:./modules/mpicbg/mpicbg.jar -Djava.ext.dirs=<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/lib/ext>:/usr/java/packages/lib/ext ./modules/mpicbg/mpicbg/ij/plugin/AbstractBlockFilter.java ./modules/mpicbg/SIFT_ExtractPointRoi.java ./modules/mpicbg/mpicbg/ij/plugin/StandardDeviation.java ./modules/mpicbg/mpicbg/ij/plugin/ElasticAlign.java ./modules/mpicbg/Transform_Affine.java ./modules/mpicbg/mpicbg/ij/plugin/PMCCBlockFlow.java ./modules/mpicbg/mpicbg/ij/plugin/RemoveSaturated.java ./modules/mpicbg/mpicbg/ij/plugin/NormalizeLocalContrast.java ./modules/mpicbg/mpicbg/ij/plugin/ElasticMontage.java ./modules/mpicbg/mpicbg/ij/plugin/DiffusionMask.java ./modules/mpicbg/Transform_MovingLeastSquaresMesh.java ./modules/mpicbg/MOPS_ExtractPointRoi.java ./modules/mpicbg/Transform_Similarity.java ./modules/mpicbg/mpicbg/ij/plugin/MSEGaussianFlow.java ./modules/mpicbg/mpicbg/ij/plugin/MSEBlockFlow.java ./modules/mpicbg/mpicbg/ij/plugin/RemoveOutliers.java ./modules/mpicbg/Find_PointRoi.java ./modules/mpicbg/mpicbg/ij/plugin/AbstractBlockStatistics.java ./modules/mpicbg/mpicbg/ij/plugin/AlignStacksWithLandmarks.java ./modules/mpicbg/Transform_Roi.java ./modules/mpicbg/Transform_Rigid.java ./modules/mpicbg/Transform_RegularizedAffine.java ./modules/mpicbg/Stack_Rotate.java ./modules/mpicbg/SIFT_Align.java ./modules/mpicbg/mpicbg/ij/plugin/SampleVariance.java ./modules/mpicbg/mpicbg/ij/plugin/Mean.java ./modules/mpicbg/Transform_Perspective.java
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: ./modules/mpicbg/SIFT_Align.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Making ./modules/mpicbg/mpicbg_.jar from <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Find_PointRoi.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/MOPS_ExtractPointRoi$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/MOPS_ExtractPointRoi$Param.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/MOPS_ExtractPointRoi.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/SIFT_Align$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/SIFT_Align$Param.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/SIFT_Align.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/SIFT_ExtractPointRoi$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/SIFT_ExtractPointRoi$Param.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/SIFT_ExtractPointRoi.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Stack_Rotate$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Stack_Rotate$GUI.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Stack_Rotate$MappingThread.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Stack_Rotate.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_Affine.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_MovingLeastSquaresMesh.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_Perspective.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_RegularizedAffine.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_Rigid.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_Roi.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/Transform_Similarity.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/AbstractBlockFilter.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/AbstractBlockStatistics.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/AlignStacksWithLandmarks.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/DiffusionMask.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign$2.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign$Features.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign$Param.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign$PointMatches.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign$Triple.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticAlign.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticMontage$1.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/ElasticMontage$2.class> 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<https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/NormalizeLocalContrast.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/PMCCBlockFlow.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/RemoveOutliers.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/RemoveSaturated.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/SampleVariance.class> <https://qa.nest-initiative.org/job/fiji-full/ws/build/plugins/mpicbg_/mpicbg_/mpicbg/ij/plugin/StandardDeviation.class>  LICENSE  plugins.config
Leaving modules/mpicbg/
plugins/mpicbg_.jar is not up-to-date because modules/mpicbg/mpicbg_.jar is newer: Fri Aug 10 17:27:14 CEST 2012 < Fri Aug 10 17:27:18 CEST 2012
Checking prerequisites of (fiji.build.SubFake) plugins/CorrectBleach_.jar <- src-pl...
Building (fiji.build.SubFake) plugins/CorrectBleach_.jar <- src-pl...
Parsing src-plugins/CorrectBleach_/pom.xml
Compiling 8 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramMatcher.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramPlot.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_/src/main/java/histogram2/Util.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_/src/main/java/histogram2/PiecewiseLinearCdf.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/Graph_Cut.jar <- src-plugins...
Building (fiji.build.SubFake) plugins/Graph_Cut.jar <- src-plugins...
Parsing src-plugins/Graph_Cut/pom.xml
Parsing /home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.pom
Parsing /home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.pom
Compiling 251 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core>
[-classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/classes,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/src/main/java/mpicbg/imglib/labeling/DefaultLabelingCursorStrategy.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/src/main/java/mpicbg/imglib/labeling/Labeling.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/src/main/java/mpicbg/imglib/labeling/LocalizableLabelingCursor.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/src/main/java/mpicbg/imglib/labeling/BoundingBox.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/src/main/java/mpicbg/imglib/labeling/LabelingMapping.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/src/main/java/mpicbg/imglib/labeling/LabelingCursorStrategyFactory.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/src/main/java/mpicbg/imglib/labeling/LabelingType.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/src/main/java/mpicbg/imglib/labeling/LabelingCursorStrategy.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/src/main/java/mpicbg/imglib/labeling/LocalizableLabelingPerimeterCursor.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/src/main/java/mpicbg/imglib/labeling/DefaultLabelingCursorStrategyFactory.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/src/main/java/mpicbg/imglib/exception/ImgLibException.java,> 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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/classes>
Compiling 87 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms>
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<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/kdtree/NearestNeighborSearch.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/kdtree/DistanceComparator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/kdtree/node/NonLeaf.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/kdtree/node/Node.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/kdtree/node/SimpleNode.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/kdtree/node/Leaf.java,> 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<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/MultiThreadedAlgorithm.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/floydsteinberg/FloydSteinbergDithering.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/integral/IntegralImageLong.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/integral/IntegralImageDouble.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/integral/IntegralImage.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/integral/ScaleAreaAveraging2d.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/histogram/arbitrary/RealHistogramBinFactory.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/histogram/Histogram.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/histogram/HistogramKey.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/histogram/discrete/DiscreteIntHistogramBinFactory.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/histogram/HistogramBinFactory.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/histogram/HistogramBin.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/peak/GaussianMultiDLM.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/peak/GaussianPeakFitterND.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/peak/FitFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/peak/LevenbergMarquardtSolver.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/projection/MaxProjection.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/src/main/java/mpicbg/imglib/algorithm/mirror/MirrorImage.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/imglib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.jar
Compiling 21 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij>
[-classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/imglib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/target/imglib-algorithms-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/type/numeric/RGBALegacyType.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/cursor/imageplus/ImagePlusLocalizableCursor.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/cursor/imageplus/ImagePlusCursor.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/cursor/imageplus/ImagePlusLocalizablePlaneCursor.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/cursor/imageplus/ImagePlusLocalizableByDimCursor.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/cursor/imageplus/ImagePlusCursor2D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/cursor/imageplus/ImagePlusLocalizableByDimOutOfBoundsCursor.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/image/display/imagej/SliceTransformableExtractionFloat.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/image/display/imagej/ImageJFunctions.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/image/display/imagej/ImageJVirtualDisplay.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/image/display/imagej/RGBALegacyTypeDisplay.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/image/display/imagej/InverseTransformDescription.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/image/display/imagej/SliceTransformableExtraction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/image/display/imagej/ImageJVirtualStack.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/image/ImagePlusAdapter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/container/imageplus/ShortImagePlus.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/container/imageplus/ImagePlusContainerFactory.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/container/imageplus/IntImagePlus.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/container/imageplus/ByteImagePlus.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/container/imageplus/ImagePlusContainer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/src/main/java/mpicbg/imglib/container/imageplus/FloatImagePlus.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/imglib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/target/imglib-algorithms-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 4 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Graph_Cut>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Graph_Cut/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/imglib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/target/imglib-algorithms-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/target/imglib-ij-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Graph_Cut/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Graph_Cut/src/main/java/graphcut/GraphCut.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Graph_Cut/src/main/java/graphcut/Graph_Cut.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Graph_Cut/src/main/java/graphcut/ImageOverlay.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Graph_Cut/src/main/java/graphcut/Graph.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Graph_Cut/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/imglib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/target/imglib-algorithms-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/target/imglib-ij-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/Descriptor_based_registratio...
Building (fiji.build.SubFake) plugins/Descriptor_based_registratio...
Parsing src-plugins/Descriptor_based_registration/pom.xml
Parsing /home/jenkins/.m2/repository/junit/junit/4.5/junit-4.5.pom
Parsing /home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-parent/1.5.10/slf4j-parent-1.5.10.pom
Parsing /home/jenkins/.m2/repository/log4j/log4j/1.2.14/log4j-1.2.14.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-log4j12/1.5.10/slf4j-log4j12-1.5.10.pom
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Parsing /home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.pom
Parsing /home/jenkins/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.pom
Parsing /home/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.pom
Parsing /home/jenkins/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.pom
Parsing /home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.pom
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Parsing /home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.pom
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Parsing /home/jenkins/.m2/repository/jfree/jcommon/1.0.15/jcommon-1.0.15.pom
Parsing /home/jenkins/.m2/repository/jfree/jfreechart/1.0.13/jfreechart-1.0.13.pom
Parsing /home/jenkins/.m2/repository/jfree/jcommon/1.0.16/jcommon-1.0.16.pom
Parsing /home/jenkins/.m2/repository/org/sonatype/oss/oss-parent/7/oss-parent-7.pom
Parsing /home/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.pom
Parsing /home/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.pom
Parsing /home/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.pom
Parsing /home/jenkins/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.pom
Parsing /home/jenkins/.m2/repository/essi-unidata/netcdf-java/4.0.41/netcdf-java-4.0.41.pom
Compiling 22 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization>
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Compiling 190 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib>
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Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 121 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer>
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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/Jama-1.0.2.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/imglib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/junit/junit/4.5/junit-4.5.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 32 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins>
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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/Jama-1.0.2.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/home/jenkins/.m2/repository/junit/junit/4.5/junit-4.5.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/MinimumProjector.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/MaximumProjector.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/Count_Files.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMRegularStack.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/Projector.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/DoubleSlider.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/Combine_SPIM_Projects.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMStack.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/OpenerGenericDialog.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/XMLReader.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMVirtualStack.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMExperiment.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIM_Opener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/Check_Directories.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/Rename.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 344 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai>
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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/target/classes>:/home/jenkins/.m2/repository/com/sun/clibwrapper_jiio/1.1/clibwrapper_jiio-1.1.jar
<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/src/com/sun/media/imageioimpl/plugins/pnm/PNMImageWriter.java>:148: warning: sun.security.action.GetPropertyAction is internal proprietary API and may be removed in a future release
               new sun.security.action.GetPropertyAction("line.separator"));
                                      ^
<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/src/com/sun/media/imageioimpl/plugins/pnm/PNMImageReader.java>:136: warning: sun.security.action.GetPropertyAction is internal proprietary API and may be removed in a future release
               new sun.security.action.GetPropertyAction("line.separator"));
                                      ^
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 warnings
Compiling 47 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/common>
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Compiling 196 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/scifio>
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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/scifio/target/classes>:/home/jenkins/.m2/repository/com/sun/clibwrapper_jiio/1.1/clibwrapper_jiio-1.1.jar:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/target/jai_imageio-4.4-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/common/target/loci-common-4.4-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/stubs/lwf-stubs/target/lwf-stubs-4.4-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/ome-xml/target/ome-xml-4.4-SNAPSHOT.jar>:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/scifio/src/loci/formats/itk/ITKBridgeJNI.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/io>
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Compiling 143 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration>
[-source, 1.5, -target, 1.5, -classpath, 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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins/target/Fiji_Plugins-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jama/target/Jama-1.0.2.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener/target/SPIM_Opener-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/sun/clibwrapper_jiio/1.1/clibwrapper_jiio-1.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/ImageJA/target/ij-1.47a.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/core/target/imglib-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/algorithms/target/imglib-algorithms-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/ij/target/imglib-ij-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/imglib/imglib1/io/target/imglib-io-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/forks/jai/target/jai_imageio-4.4-SNAPSHOT.jar>:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar:/home/jenkins/.m2/repository/jfree/jcommon/1.0.15/jcommon-1.0.15.jar:/home/jenkins/.m2/repository/jfree/jcommon/1.0.16/jcommon-1.0.16.jar:/home/jenkins/.m2/repository/jfree/jfreechart/1.0.13/jfreechart-1.0.13.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/home/jenkins/.m2/repository/junit/junit/4.5/junit-4.5.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/common/target/loci-common-4.4-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/stubs/lwf-stubs/target/lwf-stubs-4.4-SNAPSHOT.jar>:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/home/jenkins/.m2/repository/mpicbg/mpicbg/20120621/mpicbg-20120621.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/ome-xml/target/ome-xml-4.4-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/bio-formats/components/scifio/target/scifio-4.4-SNAPSHOT.jar>:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/home/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.jar
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java>:126: cannot find symbol
symbol  : method setExtendImageByKernelSize(boolean)
location: class mpicbg.imglib.algorithm.fft.FourierConvolution<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.real.FloatType>
				this.fftConvolution1.setExtendImageByKernelSize( false );
				                    ^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java>:131: cannot find symbol
symbol  : method setExtendImageByKernelSize(boolean)
location: class mpicbg.imglib.algorithm.fft.FourierConvolution<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.real.FloatType>
				this.fftConvolution2.setExtendImageByKernelSize( false );
				                    ^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/Block.java>:314: cannot find symbol
symbol  : method setExtendImageByKernelSize(boolean)
location: class mpicbg.imglib.algorithm.fft.FourierConvolution<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.real.FloatType>
		t2.setExtendImageByKernelSize( false );
		  ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
3 errors
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
	at fiji.build.minimaven.POM.build(POM.java:223)
	at fiji.build.minimaven.POM.build(POM.java:177)
	at fiji.build.minimaven.POM.buildJar(POM.java:164)
	at fiji.build.SubFake.action(SubFake.java:184)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:242)
	at fiji.build.Fake.main(Fake.java:56)
Compile error: 1
	in rule (fiji.build.SubFake) plugins/Descriptor_based_registratio...
	in rule (fiji.build.All) all <- ImageJ fiji jars/VectorString.jar...
Build step 'Execute shell' marked build as failure
Archiving artifacts