[ImageJ-bugs] [Bug 1179] New: macro waitForUser issue
bugzilla at fiji.sc
bugzilla at fiji.sc
Tue Oct 20 09:39:43 CDT 2015
http://fiji.sc/bugzilla/show_bug.cgi?id=1179
Bug ID: 1179
Summary: macro waitForUser issue
Product: Fiji
Version: unspecified
Hardware: PC
OS: Windows
Status: NEW
Severity: normal
Priority: P4
Component: Plugins
Assignee: imagej-bugs at imagej.net
Reporter: vbindoka at bsd.uchicago.edu
CC: vbindoka at bsd.uchicago.edu
I'm getting random failure of scripts with err mssg of "duplicate call
'waitForUser'"
My input is a n-CH stack. I ask the user to scroll to 3 certain CHs. The script
can stop on call 2 or call 3, OR run perfectly well !
My workaround was to add a line to do something {set current CH}, and that
seems to avoid the random stoppage!
example:
waitForUser("cfp","find CFP");
Stack.getPosition(cfp, s, fr);
Stack.setChannel(cfp); //bug fix, randomly stops due to 'duplicate call'
if JUST get CH
waitForUser("gfp","find GFP");
Stack.getPosition(gfp, s, fr);
Stack.setChannel(gfp);
waitForUser("rfp","find RFP");
Stack.getPosition(rfp, s, fr);
running without the setChannel lines creates the problem [randomly]
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: E:\SEP201~1/java/win64/jdk1.6.0_24//jre
imagej.dir => E:\SEP201~1
Information about the version of each plugin:
Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20151016203411)
Fiji: http://update.fiji.sc/ (last check:20151016212838)
3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last check:20151008015610)
Bio-Formats: http://sites.imagej.net/Bio-Formats/ (last check:20151019202648)
ClearVolume: http://sites.imagej.net/ClearVolume/ (last check:20150703051607)
FFMPEG: http://fiji.sc/~schindelin/ffmpeg-plugins/ (last check:20130606102449)
GDSC-SMLM: http://sites.imagej.net/GDSC-SMLM/ (last check:20151020071423)
HDF5: http://sites.imagej.net/Ronneber/ (last check:20150214064119)
Morphology: http://sites.imagej.net/Landini/ (last check:20140723095558)
MS-ECS-2D: http://sites.imagej.net/MS-ECS-2D/ (last check:20150821142350)
Stowers: http://research.stowers.org/imagejplugins/updates/ (last
check:20151015110606)
Files not up-to-date:
6e424a26 (UPDATEABLE) 20151019041345 jars/bio-formats/formats-api.jar
56e8145e (UPDATEABLE) 20151013073914 jars/bio-formats/formats-bsd.jar
6d337b7a (LOCAL_ONLY) 20140730142734 plugins/Accurate_Gaussian_Blur.class
6e9d50db (LOCAL_ONLY) 20140320051924 plugins/Adjustable_Watershed.class
306ad943 (LOCAL_ONLY) 20150721115948 plugins/Align3_TP.jar
12ec0761 (LOCAL_ONLY) 20120224100622 plugins/Align_RGB_planes.class
f98ce4f3 (LOCAL_ONLY) 20150721120238 plugins/Auto_Align_2.jar
b0398adb (LOCAL_ONLY) 20141028073350
plugins/DeconvolutionLab/DeconvolutionLab_.jar
11326750 (LOCAL_ONLY) 20050408103628 plugins/FFT1D.class
18f23277 (LOCAL_ONLY) 20050408103628 plugins/FourierSpace.class
44693e65 (LOCAL_ONLY) 20150325121214 plugins/Frac_Lac.jar
348da731 (LOCAL_ONLY) 20141126044659 plugins/GHT_.jar
15a0aac2 (LOCAL_ONLY) 20050408150536 plugins/GibsonPSF.class
52861b7c (LOCAL_ONLY) 20050408150244 plugins/GibsonPSFF.class
f481dc68 (LOCAL_ONLY) 20120817074900 plugins/Hybrid_2D_Filters.class
6b2de3e5 (LOCAL_ONLY) 20120817084143 plugins/Hybrid_3D_Filters.class
e9cb6eb7 (LOCAL_ONLY) 20150115083713 plugins/Image_CorrelationJ_1o.class
077159f3 (LOCAL_ONLY) 20150716125422 plugins/Image_Stabilizer.class
55624188 (LOCAL_ONLY) 20150716125430
plugins/Image_Stabilizer_Log_Applier.class
71ae5c42 (LOCAL_ONLY) 20140509130342 plugins/KalmanOpenStackFilter_.class
d0d470a1 (LOCAL_ONLY) 20150910042624 plugins/MIST_.jar
53c5c1ad (LOCAL_ONLY) 20141103073745 plugins/NL_Means_.jar
21927175 (LOCAL_ONLY) 20140808090713 plugins/PIV_.jar
b3b13b1f (LOCAL_ONLY) 20050408150244 plugins/PSFCredits$1.class
cb99705d (LOCAL_ONLY) 20050408150244 plugins/PSFCredits.class
de90b917 (LOCAL_ONLY) 20050408150536 plugins/PSFCreditsG$1.class
e33950eb (LOCAL_ONLY) 20050408150536 plugins/PSFCreditsG.class
9f2412ff (LOCAL_ONLY) 20141028082626 plugins/PSF_Generator.jar
5a3abd78 (LOCAL_ONLY) 20050408150536 plugins/PSF_Gibson_.class
65b190f7 (LOCAL_ONLY) 20121002063426 plugins/PSF_Simple_.class
57317a41 (LOCAL_ONLY) 20151008100259 plugins/Polynomial_Surface_Fit.class
12289f6e (LOCAL_ONLY) 20110916093010 plugins/PureDenoise_.jar
c800e20c (LOCAL_ONLY) 20151008092212 plugins/Thunder_STORM.jar
69b16199 (LOCAL_ONLY) 20050408103628 plugins/WaveDaub4.class
f0990b22 (LOCAL_ONLY) 20050408103628 plugins/WaveDaub4Filter.class
27901023 (LOCAL_ONLY) 20050408152652 plugins/Wavelet_Deconvolution_.class
7ad8e0c0 (UPDATEABLE) 20150406040305 plugins/gdsc_smlm-0.3.1-SNAPSHOT.jar
71331805 (LOCAL_ONLY) 20140314082430 plugins/jacop_.jar
9bbfb280 (LOCAL_ONLY) 20140225135257 plugins/octane2_.jar
--
You are receiving this mail because:
You are the assignee for the bug.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://imagej.net/pipermail/imagej-bugs/attachments/20151020/75a4fc42/attachment-0001.html>
More information about the Imagej-bugs
mailing list