[ImageJ-bugs] [Bug 1161] Sld files open in Windows but not Mac

bugzilla at fiji.sc bugzilla at fiji.sc
Mon Oct 5 12:32:53 CDT 2015


http://fiji.sc/bugzilla/show_bug.cgi?id=1161

Curtis Rueden <ctrueden at wisc.edu> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|CONFIRMED                   |RESOLVED
         Resolution|---                         |MOVED

--- Comment #7 from Curtis Rueden <ctrueden at wisc.edu> ---
I tested this on Windows 7, and received a different exception:

(Fiji Is Just) ImageJ 2.0.0-rc-39/1.50b; Java 1.8.0_05 [64-bit]; Windows 7 6.1;
32MB of 1527MB (2%)

java.lang.AssertionError: Failed with exception: The file is not a valid
SlideBook document. Z plane index too large.

    at loci.formats.in.SlideBook6Reader.getZPosition(Native Method)
    at loci.formats.in.SlideBook6Reader.initFile(SlideBook6Reader.java:277)
    at loci.formats.FormatReader.setId(FormatReader.java:1426)
    at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)
    at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)
    at loci.plugins.in.Importer.showDialogs(Importer.java:137)
    at loci.plugins.in.Importer.run(Importer.java:75)
    at loci.plugins.LociImporter.run(LociImporter.java:78)
    at ij.IJ.runUserPlugIn(IJ.java:212)
    at ij.IJ.runPlugIn(IJ.java:176)
    at ij.Executer.runCommand(Executer.java:132)
    at ij.Executer.run(Executer.java:65)
    at java.lang.Thread.run(Thread.java:745)

This suggests a likely cause of the file working on your Windows 7 systems,
Glen: you have the matching version of SlideBook installed on those systems,
with the SlideBook native library available on your path. Bio-Formats picks
this up, uses it, and is thus able to read these files. Whereas on my Windows 7
system, the native library version does not match (almost certainly is out of
date) -- hence the error above.

Anyway, I filed this issue with the Bio-Formats team at:
   https://github.com/openmicroscopy/bioformats/issues/2008

You can track further progress on the issue there.

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