[ImageJ-bugs] [Bug 1040] New: Metadata collection interfering with opening virtual stack

bugzilla at fiji.sc bugzilla at fiji.sc
Mon Mar 30 12:04:47 CDT 2015


http://fiji.sc/bugzilla/show_bug.cgi?id=1040

            Bug ID: 1040
           Summary: Metadata collection interfering with opening virtual
                    stack
           Product: Fiji
           Version: unspecified
          Hardware: Macintosh
                OS: Mac OS
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: e.cram at neu.edu
                CC: e.cram at neu.edu

Mac 0S 10.9.5 - newest update of Fiji -now I can't make virtual stacks.  
I attempt to a open folder of tifs as a virtual stack by dragging the folder to
the >> symbol, or by using File>Import>Image Sequence. 
An error is generated for EACH tif as Fiji attempts to extract metadata. 
Fiji Warning "Expected positive value...; got 0.0" generated on each frame. See
uploaded screen grabs.
This is preventing me from making the stack in a finite amount of time. 
I have uploaded two screen grabs of the console windows.

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.9.5
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-462-11M4609
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-462
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150328005348)
Fiji: http://fiji.sc/update/ (last check:20150324232333)

Files not up-to-date:
  1ad3be0d (LOCAL_ONLY) 20140504174929 jars/jpedalSTD.jar

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