[ImageJ-bugs] [Bug 1121] New: 3D Viewer plugin fails to launch.

bugzilla at fiji.sc bugzilla at fiji.sc
Mon Jul 20 05:52:59 CDT 2015 

http://fiji.sc/bugzilla/show_bug.cgi?id=1121

            Bug ID: 1121
           Summary: 3D Viewer plugin fails to launch.
           Product: Fiji
           Version: unspecified
          Hardware: Macintosh
                OS: Mac OS
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: grocott.timothy at gmail.com
                CC: grocott.timothy at gmail.com

Having updated Fiji today, the 3D Viewer plugin now fails to launch. The plugin
worked fine on Friday before I updated.

The following exception is printed to the console:

version = 1.5
Exception in thread "J3D-Renderer-1" java.lang.UnsatisfiedLinkError: no jogl in
java.library.path
    at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1886)
    at java.lang.Runtime.loadLibrary0(Runtime.java:849)
    at java.lang.System.loadLibrary(System.java:1088)
    at
com.sun.opengl.impl.NativeLibLoader.loadLibraryInternal(NativeLibLoader.java:189)
    at com.sun.opengl.impl.NativeLibLoader.access$000(NativeLibLoader.java:49)
    at
com.sun.opengl.impl.NativeLibLoader$DefaultAction.loadLibrary(NativeLibLoader.java:80)
    at
com.sun.opengl.impl.NativeLibLoader.loadLibrary(NativeLibLoader.java:103)
    at com.sun.opengl.impl.NativeLibLoader.access$200(NativeLibLoader.java:49)
    at com.sun.opengl.impl.NativeLibLoader$1.run(NativeLibLoader.java:111)
    at java.security.AccessController.doPrivileged(Native Method)
    at com.sun.opengl.impl.NativeLibLoader.loadCore(NativeLibLoader.java:109)
    at
com.sun.opengl.impl.macosx.MacOSXGLDrawableFactory.<clinit>(MacOSXGLDrawableFactory.java:53)
    at java.lang.Class.forName0(Native Method)
    at java.lang.Class.forName(Class.java:190)
    at
javax.media.opengl.GLDrawableFactory.getFactory(GLDrawableFactory.java:108)
    at javax.media.j3d.JoglPipeline$QueryCanvas.<init>(JoglPipeline.java:9010)
    at
javax.media.j3d.JoglPipeline.getBestConfiguration(JoglPipeline.java:8774)
    at javax.media.j3d.Renderer.doWork(Renderer.java:495)
    at javax.media.j3d.J3dThread.run(J3dThread.java:256)

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.9.5
  java.version => 1.7.0_55
  java.vendor => Oracle Corporation
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.7.0_55-b13
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 24.55-b03
  java.vm.vendor => Oracle Corporation
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.7
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /Library/Internet
Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150715220840)
Fiji: http://fiji.sc/update/ (last check:20150714172641)

Files not up-to-date:
  b732dbf2 (MODIFIED) 20150709103750 Contents/Info.plist
  1ad3be0d (LOCAL_ONLY) 20130220222017 jars/jpedalSTD.jar
  050fdbc5 (LOCAL_ONLY) 20150506230519 plugins/Atlas_Toolkit_1.0-SNAPSHOT.jar
  4ed3330f (LOCAL_ONLY) 20150526174630
plugins/Cell_Segmentation_3D_1.0-SNAPSHOT.jar
  3702fd24 (LOCAL_ONLY) 20140819180235 plugins/test_1.0-SNAPSHOT.jar
  d154c785 (LOCAL_ONLY) 20121218131047
plugins/zAtlas/Concurrent_Boxel_Projection_$1.class
  ff657229 (LOCAL_ONLY) 20121218131047
plugins/zAtlas/Concurrent_Boxel_Projection_.class
  cd67a477 (LOCAL_ONLY) 20131120110906
plugins/zAtlas/Extract_Nuclear_Signal_.class
  b543e229 (LOCAL_ONLY) 20140606153539
plugins/zAtlas/Label_Registration_3D_$1.class
  88881289 (LOCAL_ONLY) 20140606153539
plugins/zAtlas/Label_Registration_3D_$2.class
  f690e1e2 (LOCAL_ONLY) 20140606153539
plugins/zAtlas/Label_Registration_3D_.class
  dcc8c2a1 (LOCAL_ONLY) 20130929131029 plugins/zAtlas/Mean_from_Node_.class
  9db3aeb1 (LOCAL_ONLY) 20140119124228
plugins/zAtlas/Merge_Registered_Volumes_.class
  5ab56912 (LOCAL_ONLY) 20130111150417
plugins/zAtlas/NuclearSegmenter$Fvector3d.class
  daa1725c (LOCAL_ONLY) 20130111150417
plugins/zAtlas/NuclearSegmenter$Ivector3d.class
  775bc2c0 (LOCAL_ONLY) 20130111150417 plugins/zAtlas/NuclearSegmenter.class
  7e13b2cc (LOCAL_ONLY) 20130306164618 plugins/zAtlas/OrthogonalTransform.class
  63c32228 (LOCAL_ONLY) 20130512184220
plugins/zAtlas/OrthogonalTransformSequence$1.class
  b668837a (LOCAL_ONLY) 20130512184220
plugins/zAtlas/OrthogonalTransformSequence$OrthogonalPlane.class
  d3bdc333 (LOCAL_ONLY) 20130512184220
plugins/zAtlas/OrthogonalTransformSequence.class
  ddc80b2d (LOCAL_ONLY) 20131114222339
plugins/zAtlas/Project_to_Anatomy_$1.class
  44919b2c (LOCAL_ONLY) 20131114222339
plugins/zAtlas/Project_to_Anatomy_$2.class
  96b7940c (LOCAL_ONLY) 20131114222339
plugins/zAtlas/Project_to_Anatomy_$3.class
  06377a2e (LOCAL_ONLY) 20131114222339
plugins/zAtlas/Project_to_Anatomy_$GD.class
  d7084438 (LOCAL_ONLY) 20131114222339 plugins/zAtlas/Project_to_Anatomy_.class
  0eebc203 (LOCAL_ONLY) 20130627150154 plugins/zAtlas/Sample_Volumes_.class
  dc335d42 (LOCAL_ONLY) 20130512184016
plugins/zAtlas/Sequential_Orthogonal_Registration_$1.class
  74c0ac91 (LOCAL_ONLY) 20130512184016
plugins/zAtlas/Sequential_Orthogonal_Registration_$2.class
  1044e481 (LOCAL_ONLY) 20130512184016
plugins/zAtlas/Sequential_Orthogonal_Registration_.class
  c70158cc (LOCAL_ONLY) 20130628185017 plugins/zAtlas/StackRegister.class
  0ae985dc (LOCAL_ONLY) 20130307113816 plugins/zAtlas/Transform_Stack_$1.class
  19db5aa4 (LOCAL_ONLY) 20130307113816 plugins/zAtlas/Transform_Stack_$2.class
  5cedd6c3 (LOCAL_ONLY) 20130307113816 plugins/zAtlas/Transform_Stack_.class
  00b2ba4d (LOCAL_ONLY) 20130428233126
plugins/zAtlas/Transform_Stack_new_$1.class
  d146a7c9 (LOCAL_ONLY) 20130512021451
plugins/zAtlas/Transform_Stack_new_.class
  5a54607f (LOCAL_ONLY) 20130626173737
plugins/zAtlas/Tree_to_Volume_$Node.class
  9375f83c (LOCAL_ONLY) 20130626173737
plugins/zAtlas/Tree_to_Volume_$TreeProcessor.class
  dbde5b3f (LOCAL_ONLY) 20130626173737 plugins/zAtlas/Tree_to_Volume_.class
  68850723 (LOCAL_ONLY) 20130221104848
plugins/zAtlas/cSegment_Cell_Nuclei_$1.class
  6f18214f (LOCAL_ONLY) 20130221104848
plugins/zAtlas/cSegment_Cell_Nuclei_.class
  ea0435ae (LOCAL_ONLY) 20130917113455 plugins/zAtlas/log10.class
  5fb3e5aa (LOCAL_ONLY) 20120302012545
plugins/zAtlas/org-netbeans-swing-outline.jar

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