[ImageJ-bugs] [Bug 989] HDF5 plugin doesnt load

bugzilla at fiji.sc bugzilla at fiji.sc
Wed Feb 4 11:23:26 CST 2015


http://fiji.sc/bugzilla/show_bug.cgi?id=989

Niko Ehrenfeuchter <nikolaus.ehrenfeuchter at unibas.ch> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
                 CC|                            |nikolaus.ehrenfeuchter at unib
                   |                            |as.ch

--- Comment #4 from Niko Ehrenfeuchter <nikolaus.ehrenfeuchter at unibas.ch> ---
Hi all,

here is the corresponding stack trace from running Fiji with "--debug":

---------------------------------------
There was a problem with the class
ch.systemsx.cisd.hdf5.HDF5DataTypeInformation which can be found here:
/opt/packages/Fiji.app/jars/jhdf5-13.06.2.jar
/opt/packages/Fiji.app/plugins/cisd-jhdf5-batteries_included_lin_win_mac.jar

WARNING: multiple locations found!
java.lang.NoSuchMethodError:
ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.isSigned()Z
    at HDF5ImageJ.dsInfoToTypeString(HDF5ImageJ.java:799)
    at HDF5_Reader_Vibez.recursiveGetInfo(HDF5_Reader_Vibez.java:423)
    at HDF5_Reader_Vibez.recursiveGetInfo(HDF5_Reader_Vibez.java:451)
    at HDF5_Reader_Vibez.run(HDF5_Reader_Vibez.java:167)
    at ij.IJ.runUserPlugIn(IJ.java:202)
    at ij.IJ.runPlugIn(IJ.java:166)
    at ij.Executer.runCommand(Executer.java:131)
    at ij.Executer.run(Executer.java:64)
    at java.lang.Thread.run(Thread.java:662)

java.lang.NoSuchMethodException: Could not find method
ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.isSigned()Z
There was a problem with the class
ch.systemsx.cisd.hdf5.HDF5DataTypeInformation which can be found here:
/opt/packages/Fiji.app/jars/jhdf5-13.06.2.jar
/opt/packages/Fiji.app/plugins/cisd-jhdf5-batteries_included_lin_win_mac.jar

WARNING: multiple locations found!
java.lang.NoSuchMethodError:
ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.isSigned()Z
    at HDF5ImageJ.dsInfoToTypeString(HDF5ImageJ.java:799)
    at HDF5_Reader_Vibez.recursiveGetInfo(HDF5_Reader_Vibez.java:423)
    at HDF5_Reader_Vibez.recursiveGetInfo(HDF5_Reader_Vibez.java:451)
    at HDF5_Reader_Vibez.run(HDF5_Reader_Vibez.java:167)
    at ij.IJ.runUserPlugIn(IJ.java:202)
    at ij.IJ.runPlugIn(IJ.java:166)
    at ij.Executer.runCommand(Executer.java:131)
    at ij.Executer.run(Executer.java:64)
    at java.lang.Thread.run(Thread.java:662)

    at HDF5ImageJ.dsInfoToTypeString(HDF5ImageJ.java:799)
    at HDF5_Reader_Vibez.recursiveGetInfo(HDF5_Reader_Vibez.java:423)
    at HDF5_Reader_Vibez.recursiveGetInfo(HDF5_Reader_Vibez.java:451)
    at HDF5_Reader_Vibez.run(HDF5_Reader_Vibez.java:167)
    at ij.IJ.runUserPlugIn(IJ.java:202)
    at ij.IJ.runPlugIn(IJ.java:166)
    at ij.Executer.runCommand(Executer.java:131)
    at ij.Executer.run(Executer.java:64)
    at java.lang.Thread.run(Thread.java:662)
---------------------------------------

Cheers
Niko

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