http://fiji.sc/bugzilla/show_bug.cgi?id=1134
Bug ID: 1134
Summary: Rotation of czi file opened as virtual stack only
retains single z slice
Product: Fiji
Version: unspecified
Hardware: PC
OS: Windows
Status: NEW
Severity: normal
Priority: P4
Component: Plugins
Assignee: imagej-bugs at imagej.net
Reporter: jan.eglinger at gmail.com
CC: jan.eglinger at gmail.com
To reproduce:
- open a czi file containing multiple z slices, using Bio-formats importer
with "Open as virtual stack"
- Image > Transform > Rotate 90 Degrees Right
- scroll through the stack
All z slices appear the same now, being copies of the slice that was active
when performing the rotation.
On multi-channel images, the channels are retained (i.e. different images), but
the z slices are lost (i.e. all copies of the same plane).
This bug seems to be specific for files opened via Bio-formats, since opening
tif files via Import > TIFF Virtual Stack and then performing rotation works as
expected.
Cheers,
Jan
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
C:\UTILIT~1\FIJI-L~1\Fiji.app/java/win64/jdk1.6.0_24//jre
imagej.dir => C:\UTILIT~1\FIJI-L~1\Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150722045527)
Fiji: http://fiji.sc/update/ (last check:20150724215809)
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