[ImageJ-bugs] [Bug 1045] New: Fiji does not open leica SP2 files (.lei)

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=1045

            Bug ID: 1045
           Summary: Fiji does not open leica SP2 files (.lei)
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: ahernandez at cib.csic.es
                CC: ahernandez at cib.csic.es

This is the exception message I get when I try to open a .lei file


(Fiji Is Just) ImageJ 2.0.0-rc-28/1.49q; Java 1.6.0_24 [64-bit]; Windows 7 6.1;
71MB of 2151MB (3%)

java.lang.ArithmeticException: / by zero
    at loci.formats.MetadataTools.populatePixelsOnly(MetadataTools.java:276)
    at loci.formats.MetadataTools.populateMetadata(MetadataTools.java:234)
    at loci.formats.MetadataTools.populatePixels(MetadataTools.java:134)
    at loci.formats.MetadataTools.populatePixels(MetadataTools.java:104)
    at loci.formats.in.LeicaReader.initFile(LeicaReader.java:656)
    at loci.formats.FormatReader.setId(FormatReader.java:1395)
    at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:493)
    at loci.plugins.in.ImportProcess.execute(ImportProcess.java:140)
    at loci.plugins.in.Importer.showDialogs(Importer.java:137)
    at loci.plugins.in.Importer.run(Importer.java:75)
    at loci.plugins.LociImporter.run(LociImporter.java:78)
    at ij.IJ.runUserPlugIn(IJ.java:199)
    at ij.IJ.runPlugIn(IJ.java:163)
    at ij.IJ.runPlugIn(IJ.java:152)
    at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:447)
    at HandleExtraFileTypes.run(HandleExtraFileTypes.java:66)
    at ij.IJ.runUserPlugIn(IJ.java:199)
    at ij.IJ.runPlugIn(IJ.java:163)
    at ij.IJ.runPlugIn(IJ.java:152)
    at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:486)
    at ij.io.Opener.openImage(Opener.java:360)
    at ij.io.Opener.openImage(Opener.java:239)
    at ij.io.Opener.open(Opener.java:106)
    at ij.io.Opener.openAndAddToRecent(Opener.java:288)
    at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:176)
    at ij.plugin.DragAndDrop.run(DragAndDrop.java:152)
    at java.lang.Thread.run(Thread.java:662)

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150328055348)
Fiji: http://fiji.sc/update/ (last check:20150325042333)
Bio-Formats: http://sites.imagej.net/Bio-Formats/ (last check:20150401032649)
LOCI: http://sites.imagej.net/LOCI/ (last check:20141210205338)

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