[ImageJ-bugs] [Bug 946] New: can't open .ids file with IFiji/ImageJ2 Bio-formats Importer

bugzilla at fiji.sc bugzilla at fiji.sc
Thu Oct 16 22:06:14 CDT 2014


http://fiji.sc/bugzilla/show_bug.cgi?id=946

            Bug ID: 946
           Summary: can't open .ids file with IFiji/ImageJ2 Bio-formats
                    Importer
           Product: Fiji
           Version: unspecified
          Hardware: Macintosh
                OS: Mac OS
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: kinesin2003 at yahoo.com
                CC: kinesin2003 at yahoo.com

I had a .ids file here to open, and at first it looks like this is going fine. 
But then it says, "Sorry, there was a problem during import" and the text
window (log) that pops up says this:

loci.formats.FormatException: ICS file not found.
    at loci.formats.in.ICSReader.initFile(ICSReader.java:775)
    at loci.formats.FormatReader.setId(FormatReader.java:1317)
    at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:494)
    at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
    at loci.plugins.in.Importer.showDialogs(Importer.java:141)
    at loci.plugins.in.Importer.run(Importer.java:79)
    at loci.plugins.LociImporter.run(LociImporter.java:81)
    at ij.IJ.runUserPlugIn(IJ.java:202)
    at ij.IJ.runPlugIn(IJ.java:166)
    at ij.Executer.runCommand(Executer.java:131)
    at ij.Executer.run(Executer.java:64)
    at java.lang.Thread.run(Thread.java:695)

Can you help?
I've heard that Image J used to be able to open the .ids type of files, hoping
we can still do that.

  best regards,
    Laura

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.9.4
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-462-11M4609
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-462
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20141015131008)
Fiji: http://fiji.sc/update/ (last check:20141014055500)

Files not up-to-date:
  9f4f8151 (OBSOLETE_UNINSTALLED) 20140707074617 jars/jython-2.5.2.jar

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