[ImageJ-bugs] [Bug 944] New: Errors during ImageJ launch
bugzilla at fiji.sc
bugzilla at fiji.sc
Wed Oct 15 08:23:24 CDT 2014
http://fiji.sc/bugzilla/show_bug.cgi?id=944
Bug ID: 944
Summary: Errors during ImageJ launch
Product: Fiji
Version: unspecified
Hardware: Macintosh
OS: Mac OS
Status: NEW
Severity: normal
Priority: P4
Component: Plugins
Assignee: imagej-bugs at imagej.net
Reporter: felix.meyenhofer at unifr.ch
CC: felix.meyenhofer at unifr.ch
I am launching ImageJ from within IntelliJ using the following lines:
final ImageJ ij = net.imagej.Main.launch(args);
ij.command().run(MyPlugin.class, true);
Then it throws
[WARNING] Ignoring non-existent scripts directory:
/Users/turf/Sources/imageJ/ij2/unifr_bioimage/scripts
[ERROR] Exception during event handling:
[Event] org.scijava.module.event.ModulesUpdatedEvent
context = org.scijava.Context at 521ba1d9
consumed = false
items[0] = label='About ImageJ...',
iconPath='/icons/commands/information.png', priority=0.0, enabled=true,
pluginType=Command
items[1] = label='Preferences', priority=0.0, enabled=true,
pluginType=Command
items[2] = label='Quit', iconPath='/icons/commands/door_in.png',
priority=0.0, enabled=true, pluginType=Command
[Subscriber] org.scijava.menu.DefaultMenuService [priority = 0.0]
[Method] protected void
org.scijava.menu.DefaultMenuService.onEvent(org.scijava.module.event.ModulesUpdatedEvent)
java.lang.NullPointerException
at org.scijava.menu.ShadowMenu.addChild(ShadowMenu.java:532)
at org.scijava.menu.ShadowMenu.addChild(ShadowMenu.java:529)
at org.scijava.menu.ShadowMenu.addChild(ShadowMenu.java:529)
at org.scijava.menu.ShadowMenu.addChild(ShadowMenu.java:529)
at org.scijava.menu.ShadowMenu.addChild(ShadowMenu.java:529)
at org.scijava.menu.ShadowMenu.addChild(ShadowMenu.java:529)
at org.scijava.menu.ShadowMenu.addChild(ShadowMenu.java:529)
at org.scijava.menu.ShadowMenu.addInternal(ShadowMenu.java:478)
at org.scijava.menu.ShadowMenu.addAll(ShadowMenu.java:351)
at org.scijava.menu.ShadowMenu.<init>(ShadowMenu.java:117)
at
org.scijava.menu.DefaultMenuService.addModules(DefaultMenuService.java:154)
at
org.scijava.menu.DefaultMenuService.rootMenus(DefaultMenuService.java:179)
at org.scijava.menu.DefaultMenuService.onEvent(DefaultMenuService.java:118)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.scijava.event.DefaultEventService$ProxySubscriber.onEvent(DefaultEventService.java:278)
at
org.scijava.event.DefaultEventService$ProxySubscriber.onEvent(DefaultEventService.java:252)
at
org.bushe.swing.event.ThreadSafeEventService.publish(ThreadSafeEventService.java:971)
at org.scijava.event.DefaultEventBus.access$101(DefaultEventBus.java:56)
at org.scijava.event.DefaultEventBus$1.run(DefaultEventBus.java:197)
at
org.scijava.thread.DefaultThreadService$1.run(DefaultThreadService.java:147)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:199)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
at java.awt.EventQueue.access$400(EventQueue.java:82)
at java.awt.EventQueue$2.run(EventQueue.java:676)
at java.awt.EventQueue$2.run(EventQueue.java:674)
at java.security.AccessController.doPrivileged(Native Method)
at
java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
[WARNING] No widget found for input: input
My pom.xml looks like:
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>net.imagej</groupId>
<artifactId>pom-imagej</artifactId>
<version>2.35</version>
<relativePath />
</parent>
<groupId>unifr-bioimage-ij2</groupId>
<artifactId>sandbox-2</artifactId>
<version>1.0.0-SNAPSHOT</version>
<name>Sandbox (ij2)</name>
<description></description>
<repositories>
<repository>
<id>imagej.public</id>
<url>http://maven.imagej.net/content/groups/public</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>net.imagej</groupId>
<artifactId>imagej</artifactId>
</dependency>
</dependencies>
</project>
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.9.5
java.version => 1.6.0_65
java.vendor => Apple Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_65-b14-462-11M4609
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 20.65-b04-462
java.vm.vendor => Apple Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: null
imagej.dir => /Users/turf/Applications/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140802175300)
Fiji: http://fiji.sc/update/ (last check:20140730210634)
3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last check:20140604080506)
BigDataViewer: http://sites.imagej.net/Pietzsch/ (last check:20140619131159)
BioVoxxel: http://sites.imagej.net/BioVoxxel/ (last check:20140730101642)
GDSC: http://sites.imagej.net/GDSC/ (last check:20140801132211)
LOCI: http://sites.imagej.net/LOCI/ (last check:20140401205514)
Morphology: http://sites.imagej.net/Landini/ (last check:20140723165558)
MOSAIC ToolSuite:
http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/ (last
check:20140801113045)
OMERO 5.0: http://sites.imagej.net/OMERO-5.0/ (last check:20140606044302)
PHANTAST: http://sites.imagej.net/Nicjac/ (last check:20140224235450)
Files not up-to-date:
ae78ded1 (MODIFIED) 20140707223122 Contents/Info.plist
6a342927 (MODIFIED) 20140925143930 jars/ij-1.49e.jar
f1c0db92 (LOCAL_ONLY) 20140704111856 plugins/Boris_Ratiometrics.jar
1f12fc21 (LOCAL_ONLY) 20140708111023 plugins/IntSeg_3D.jar
5f60d96e (LOCAL_ONLY) 20140708111029 plugins/Watershed_.jar
3814d5a6 (LOCAL_ONLY) 20140704130405 plugins/jars/bij.jar
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