[ImageJ-bugs] [Bug 911] New: Bio-Formats Importer cannot read new .lif format

bugzilla at fiji.sc bugzilla at fiji.sc
Wed Aug 20 14:29:15 CDT 2014


http://fiji.sc/bugzilla/show_bug.cgi?id=911

            Bug ID: 911
           Summary: Bio-Formats Importer cannot read new .lif format
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: astout at mail.med.upenn.edu
                CC: astout at mail.med.upenn.edu

Our new Leica STED confocal is running version 4.0.0.11706 of LAS AF.  Fiji is
unable to import the resulting .lif files acquired on this system using the
Bio-Formats Importer plugin.

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Users\Public\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Users\Public\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140710135854)
Fiji: http://fiji.sc/update/ (last check:20140709163742)

Files not up-to-date:
  a1a0d20a (MODIFIED) 20140708145824 jars/imagej-common-0.8.0.jar
  e8dfe85e (MODIFIED) 20140820152503 jars/imagej-common-0.8.2.jar
  9654e601 (MODIFIED) 20140731143959 jars/imagej-updater-0.5.0.jar
  04d82cff (MODIFIED) 20140820152503 jars/imagej-updater-0.6.1.jar
  4f9cde52 (MODIFIED) 20140708145908 jars/scifio-0.15.4.jar
  2f8d5769 (MODIFIED) 20140820152502 jars/scifio-0.16.1.jar
  06ac0d2a (MODIFIED) 20140731143959 jars/scijava-common-2.27.0.jar
  1f43a668 (MODIFIED) 20140820152502 jars/scijava-common-2.30.0.jar

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