[ImageJ-bugs] [Bug 896] New: Fiji cannot open PGMs after the recent updates

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=896

            Bug ID: 896
           Summary: Fiji cannot open PGMs after the recent updates
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: itsmasonnnn at gmail.com
                CC: itsmasonnnn at gmail.com

I've been using FIJI for a project of mine for the past year, and since the
past month, it's been failing to import any sort of PGM that my program
outputs. This is the output of the exception it gives me:

(Fiji Is Just) ImageJ 2.0.0-rc-9/1.49d; Java 1.6.0_24 [64-bit]; Windows 7 6.1;
12MB of 6131MB (<1%)

java.lang.NumberFormatException: For input string: "2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
2 2 2 2 2"

    at
java.lang.NumberFormatException.forInputString(NumberFormatException.java:48)

    at java.lang.Integer.parseInt(Integer.java:458)

    at java.lang.Integer.parseInt(Integer.java:499)

    at io.scif.formats.PGMFormat$Parser.typedParse(PGMFormat.java:183)

    at io.scif.formats.PGMFormat$Parser.typedParse(PGMFormat.java:161)

    at io.scif.AbstractParser.parse(AbstractParser.java:252)

    at io.scif.AbstractParser.parse(AbstractParser.java:335)

    at io.scif.AbstractParser.parse(AbstractParser.java:52)

    at io.scif.AbstractReader.setSource(AbstractReader.java:270)

    at
io.scif.services.DefaultInitializeService.initializeReader(DefaultInitializeService.java:90)

    at io.scif.img.ImgOpener.createReader(ImgOpener.java:542)

    at io.scif.img.ImgOpener.openImgs(ImgOpener.java:144)

    at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:266)

    at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:250)

    at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:78)

    at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)

    at
net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:135)

    at
net.imagej.legacy.DefaultLegacyHooks.interceptFileOpen(DefaultLegacyHooks.java:421)

    at
net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:154)

    at ij.IJ.runPlugIn(IJ.java)

    at ij.Executer.runCommand(Executer.java:131)

    at ij.Executer.run(Executer.java:64)

    at java.lang.Thread.run(Thread.java:662)

Thanks.

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: D:\DOWNLO~1\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => D:\DOWNLO~1\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140802105300)
Fiji: http://fiji.sc/update/ (last check:20140730140634)

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