[ImageJ-bugs] [Bug 893] New: Small compiler issue within the Fiji script editor

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=893

            Bug ID: 893
           Summary: Small compiler issue within the Fiji script editor
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: philippe.carl at unistra.fr
                CC: philippe.carl at unistra.fr

Dear all/Johannes,
I just figured out that the Fiji Script editor is not anymore compiling a java
file when it is calling a library that is linked to the plugin.
In order to try to make myself a little bit clearer, let me try to describe the
problem with an example.
in the case you download the Radial Profile Extended plugin
(http://rsb.info.nih.gov/ij/plugins/radial-profile-ext.html) and then explode
the jar file
(http://rsb.info.nih.gov/ij/plugins/download/jars/Radial_Profile_Angle_Ext.jar)
in a folder, you end up with a multi_plot folder (containing an extension of
the Plot classes) and the Radial_Profile_Angle_Ext .java and .class (as well as
the plugins.config) files.
And if you then try to Run the Radial_Profile_Angle_Ext .java file from a Fiji
Script editor window you get the following error:
Radial_Profile_Angle_Ext.java:18: package multi_plot does not exist
import multi_plot.*;
As the same file compiled through the Plugins->Compile_and_Run… feature is
compiling right.
Am I doing something wrong?
Should I change something within the code so this is still working (as I was
still developing code in the same way with success some weeks ago).
I thank you very much in advance for your help and/or suggestions.
My best regards,
Philippe

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Work\SOFTWA~1\Fiji/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Work\SOFTWA~1\Fiji

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140810142118)
Fiji: http://fiji.sc/update/ (last check:20140808200226)

Files not up-to-date:
  1c354c8b (LOCAL_ONLY) 20000413165800 luts/S_Pet.lut
  07c05d23 (LOCAL_ONLY) 20121217160354 luts/multitxt.lut
  bf66597a (LOCAL_ONLY) 20121218140114 luts/physicsmodtxt.lut
  6e6ad239 (LOCAL_ONLY) 20121217155828 luts/physicstxt.lut
  12fce5aa (LOCAL_ONLY) 20140718101359 plugins/ExtendedDepthField.txt
  7433440a (LOCAL_ONLY) 20130204161151 plugins/Image
Stabilizer/Image_Stabilizer.class
  03be9b84 (LOCAL_ONLY) 20130204161218 plugins/Image
Stabilizer/Image_Stabilizer_Log_Applier.class
  24c44d4d (LOCAL_ONLY) 20140506160726 plugins/Scripts/Ph_CARL/Close_All....ijm
  f12146b9 (LOCAL_ONLY) 20130206163024 plugins/Scripts/Ph_CARL/Close_All2.ijm
  9b4b29d2 (LOCAL_ONLY) 20140218154016
plugins/Scripts/Ph_CARL/Create_folder.ijm
  85c6344e (LOCAL_ONLY) 20131108164053
plugins/Scripts/Ph_CARL/Extract_coordinates.ijm
  ab3013fb (LOCAL_ONLY) 20131127144746
plugins/Scripts/Ph_CARL/Extract_coordinates2.ijm
  4d456e4f (LOCAL_ONLY) 20131119161132
plugins/Scripts/Ph_CARL/Fast/Reduce_Dimensionality2.ijm
  5110a5ad (LOCAL_ONLY) 20131119152640
plugins/Scripts/Ph_CARL/Fast/Set_slice_and_contrast.ijm
  7588f796 (LOCAL_ONLY) 20140718093041
plugins/Scripts/Ph_CARL/Fiji_always_on_top.js
  afaf85ed (LOCAL_ONLY) 20140718093035
plugins/Scripts/Ph_CARL/Fiji_always_on_top_end.js
  72733ef5 (LOCAL_ONLY) 20140220161413
plugins/Scripts/Ph_CARL/Filter_Images.ijm
  bb04c482 (LOCAL_ONLY) 20140704110222
plugins/Scripts/Ph_CARL/Maximum_Finder_Mod_Ext.class
  cb190657 (LOCAL_ONLY) 20130424162624
plugins/Scripts/Ph_CARL/Measure_ROI_values.ijm
  134592f3 (LOCAL_ONLY) 20121213101213
plugins/Scripts/Ph_CARL/Microscope_Scale_iMIC.class
  cbe8f8c1 (LOCAL_ONLY) 20121218094342
plugins/Scripts/Ph_CARL/Open_Recent_File_0.class
  8ba195e6 (LOCAL_ONLY) 20121218094751
plugins/Scripts/Ph_CARL/Open_Recent_File_1.class
  76008cf7 (LOCAL_ONLY) 20121218094721
plugins/Scripts/Ph_CARL/Open_Recent_File_2.class
  4f38fb08 (LOCAL_ONLY) 20140414135258
plugins/Scripts/Ph_CARL/Particle_Tracker_PIV_Inputs.jar
  b143d1c5 (LOCAL_ONLY) 20131004145906
plugins/Scripts/Ph_CARL/Reduce_Dimensionality.ijm
  8ab755b8 (LOCAL_ONLY) 20130528171542
plugins/Scripts/Ph_CARL/Resize_and_Save_as_TIFF_and_Close.ijm
  48262963 (LOCAL_ONLY) 20140218154016
plugins/Scripts/Ph_CARL/Save_FTTC_Pictures_Full_Experiment.ijm
  5c369cb4 (LOCAL_ONLY) 20130924104247
plugins/Scripts/Ph_CARL/Save_JPG_Traction.ijm
  fb4a4385 (LOCAL_ONLY) 20140218154016
plugins/Scripts/Ph_CARL/Save_JPG_Traction_Full_Experiment.ijm
  d11f8fb2 (LOCAL_ONLY) 20140218154016
plugins/Scripts/Ph_CARL/Save_PIV_FTTC_JPG_Full_Experiment.ijm
  4c3c67b6 (LOCAL_ONLY) 20140217095124
plugins/Scripts/Ph_CARL/Save_PIV_Pictures.ijm
  8bd3841b (LOCAL_ONLY) 20140217092614
plugins/Scripts/Ph_CARL/Save_PIV_Pictures_Full_Experiment.ijm
  f99cafae (LOCAL_ONLY) 20121108104349
plugins/Scripts/Ph_CARL/Save_SCFS_Data.ijm
  4da1c631 (LOCAL_ONLY) 20140207144548
plugins/Scripts/Ph_CARL/Save_SCFS_Data_new.ijm
  01611468 (LOCAL_ONLY) 20130118143346
plugins/Scripts/Ph_CARL/Save_as_TIFF_and_Close.ijm
  f7ff1d43 (LOCAL_ONLY) 20140610102635
plugins/Scripts/Ph_CARL/SegFA_PseudoTIRF.ijm
  3b022ee2 (LOCAL_ONLY) 20121212114323
plugins/Scripts/Ph_CARL/Shift_latéral.ijm
  70e6a55b (LOCAL_ONLY) 20130311151957
plugins/Scripts/Ph_CARL/Stack_to_Hyperstack.ijm
  ff04c0b0 (LOCAL_ONLY) 20140425094242
plugins/Scripts/Ph_CARL/Translation_Alignment.class
  96df2830 (LOCAL_ONLY) 20131007085502
plugins/Scripts/Ph_CARL/test/NumberParticles8_.ijm
  d34b5256 (LOCAL_ONLY) 20140730164535
plugins/Scripts/Ph_CARL/test/Versatile_Wand.class
  83cb8345 (LOCAL_ONLY) 20140723154636
plugins/Scripts/Ph_CARL/test/morphology_collection.jar
  99308836 (LOCAL_ONLY) 20131217165922 plugins/Traction Force 2/FTTC_.jar
  ec703275 (LOCAL_ONLY) 20140416161333 plugins/Traction Force 2/PIV_.jar
  7d5b3965 (LOCAL_ONLY) 20120711154540 plugins/Traction Force 2/javacv.jar
  90915f54 (LOCAL_ONLY) 20120711154548 plugins/Traction Force 2/jna.jar
  9e276f37 (LOCAL_ONLY) 20140610135439 plugins/Traction
Force/Traction_Force_Calculation_with_FRAP.class
  1a4c5bdf (LOCAL_ONLY) 20121129112014 plugins/X Shifter/X_Shifter.class
  d198e2f0 (LOCAL_ONLY) 20140702170514 plugins/arf/SegFA_PseudoTIRF_Dialog.ijm

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