[ImageJ-bugs] [Bug 892] New: SCIFIO reads grayscale image stack as colored image

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=892

            Bug ID: 892
           Summary: SCIFIO reads grayscale image stack as colored image
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P3
         Component: ImageJ2
          Assignee: imagej-bugs at imagej.net
          Reporter: limjeremiah at gmail.com
                CC: limjeremiah at gmail.com
        Orig. Est.: 7.00

Created attachment 193
  --> http://fiji.sc/bugzilla/attachment.cgi?id=193&action=edit
Grayscale image opening up as pseudo-colored stack

Hi, thank you for your help. I've discovered a bug where opening a known
grayscale image using ImageJ2(SCIFIO) results in FIJI recognizing the image as
a colored one. The images are acquired using a high speed monochromatic CCD
sensor which is incapable of producing colored images. 

My temporary fix:
Tried converting to stack > hyperstack and specifying no color, that did not
work too.
Ultimately, turning off SCIFIO helped in restoring normal functionality.

Thank you for your time. Feel free to contact me for further information.







Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to:
C:\Users\limkh\DOCUME~1\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Users\limkh\DOCUME~1\FIJI-W~1\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140615084004)
Fiji: http://fiji.sc/update/ (last check:20140613070314)

Files not up-to-date:
  6348d2cf (LOCAL_ONLY) 20140807114026 plugins/LowpassFilters_.class
  e53b0aa8 (LOCAL_ONLY) 20140807162014 plugins/Macros/StartupMacros.fiji.ijm

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