Difference between revisions of "User Guides"

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{{Book
 
{{Book
 
| image=FijiTrainingNotes.png
 
| image=FijiTrainingNotes.png
| link=https://cloudstor.aarnet.edu.au/plus/index.php/s/bxRU7kkoj2rIjCh
+
| link=https://goo.gl/ioB06O
| description=[https://cloudstor.aarnet.edu.au/plus/index.php/s/bxRU7kkoj2rIjCh Fiji Training Notes] including [https://cloudstor.aarnet.edu.au/plus/index.php/s/xdwcNFp0kafaNNN demo images] from the Australian national research and education network.
+
| description=[https://goo.gl/ioB06O Fiji Training Notes] including [https://goo.gl/wWrwsc demo images] from Monash University. Detailed screenshot and explaination steps on basic analysis through to macro code
 
}}
 
}}
 
</div>
 
</div>

Revision as of 16:10, 3 May 2017

Learn
Topics
Introduction
Getting Started
User Guides
Tutorials
Tips and Tricks
Presentations
Plugins
Techniques
All Techniques
Colocalization
Deconvolution
Registration
Segmentation
Stitching
Tracking
Visualization
Scripting
Overview
User input
Basics of script writing
Batch processing
Script Editor
Auto Imports
Templates
Running headlessly
Comparisons
Toolbox
Multithreading in Clojure
Multithreading in JavaScript
Chess in Jython
Languages
BeanShell
Groovy
ImageJ Macro
JavaScript
Lisp (Clojure)
MATLAB
Python (Jython)
R (Renjin)
Ruby (JRuby)
Scala
Imagej-user-guide.jpg
The ImageJ User Guide provides a thorough description of ImageJ's built-in functions.
Fiji-cookbook.png
The Fiji Cookbook provides an analysis-oriented introduction and user guide to ImageJ.
FluorescenceImageAnalysisIntro copy.jpg
Analyzing fluorescence microscopy images with ImageJ provides detailed information on image analysis using ImageJ.
Digital-image-processing-cover.jpg
A textbook covering many aspects of digital image processing, with code examples built with ImageJ.
BIASbookCover2016.png
A textbook for constructing bioimage analysis workflows using ImageJ macro, Matlab and R, to extract numbers out of image data. Freely downloadable from Wiley site.
FijiTrainingNotes.png
Fiji Training Notes including demo images from Monash University. Detailed screenshot and explaination steps on basic analysis through to macro code