Revision as of 16:14, 12 June 2013 by UniBas-IMCF (talk | contribs) (list + description of repository contents)

This account is mainly used to facilitate the distribution of Macros and Plugins for our users. Feel free to use this repository as you like.

To add the repository to your list of FiJi update sites, use this URI:

Macros and Plugins in the IMCF repository

Auto Run
Our custom auto run macros.
location: macros/AutoRun/
Action Bars
Our shortcut toolbars, requires the Action Bar plugin.
location: plugins/ActionBar/
IMCF Tools
Custom macros for users of our facility.
location: plugins/IMCF_Tools/
"Just another Coloc Plugin": a compilation of co-localization tools.
location: plugins/jacop_.jar
Scripts to record the desktop or a single window.
author: Albert Cardona
location: scripts/Record_*.py
Kinetochore Analysis
Plugin for analyzing kinetochores in 3D.
author / license: unknown, please check!!
location: plugins/Kinetochore_Analysis3D.class
FRAP plugins
FRAP Analysis
Tool for normalized analysis of single-spot FRAP experiments.
author: Philippe Carl (
location: plugins/FRAP_Analysis.class
Automatic detection of bleached and whole cell areas in pictures from FRAP experiments.
author: Joris Meys
location: plugins/frap_norm2.jar
Edge detection
Canny-Deriche filtering for edge detection.
author: Thomas Boudier, repackaged by Joris Meys
location: plugins/image_edge.jar

For more information about the IMCF please have a look at our website:

Imaging Core Facility of the Biozentrum, University of Basel, Switzerland.