Difference between revisions of "User:UniBas-IMCF"

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This account is mainly used to facilitate the distribution of Macros and Plugins for our users. Feel free to use this repository as you like.
 
This account is mainly used to facilitate the distribution of Macros and Plugins for our users. Feel free to use this repository as you like.
  
To add the repository to your list of FiJi update sites, use this URI:
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= Instructions =
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To add the repository to your list of FiJi update sites, use this address:
  
 
* [http://sites.imagej.net/UniBas-IMCF/ http://sites.imagej.net/UniBas-IMCF/]
 
* [http://sites.imagej.net/UniBas-IMCF/ http://sites.imagej.net/UniBas-IMCF/]
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Please see [[how to follow a 3rd party update site]] for detailed instructions how to enable an additional update site in your Fiji installation.
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PLEASE NOTE: you also need to enable the "IBMP-CNRS" update site that is already configured in Fiji (it's just not active by default). Otherwise the ActionBars won't work.
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= Description =
  
 
== Macros and Plugins in the IMCF repository ==
 
== Macros and Plugins in the IMCF repository ==

Revision as of 09:43, 7 October 2013

This account is mainly used to facilitate the distribution of Macros and Plugins for our users. Feel free to use this repository as you like.

Instructions

To add the repository to your list of FiJi update sites, use this address:

Please see how to follow a 3rd party update site for detailed instructions how to enable an additional update site in your Fiji installation.

PLEASE NOTE: you also need to enable the "IBMP-CNRS" update site that is already configured in Fiji (it's just not active by default). Otherwise the ActionBars won't work.

Description

Macros and Plugins in the IMCF repository

Auto Run
Our custom auto run macros.
location: macros/AutoRun/
Action Bars
Our shortcut toolbars, requires the Action Bar plugin.
location: plugins/ActionBar/
IMCF Tools
Custom macros for users of our facility.
location: plugins/IMCF_Tools/
JaCoP
"Just another Coloc Plugin": a compilation of co-localization tools.
location: plugins/jacop_.jar
Recording
Scripts to record the desktop or a single window.
author: Albert Cardona
location: scripts/Record_*.py
Kinetochore Analysis
Plugin for analyzing kinetochores in 3D.
author / license: unknown, please check!!
location: plugins/Kinetochore_Analysis3D.class
FRAP plugins
FRAP Analysis
Tool for normalized analysis of single-spot FRAP experiments.
author: Philippe Carl (phcarl@free.fr)
location: plugins/FRAP_Analysis.class
FRAP Norm
Automatic detection of bleached and whole cell areas in pictures from FRAP experiments.
author: Joris Meys
location: plugins/frap_norm2.jar
Edge detection
Canny-Deriche filtering for edge detection.
author: Thomas Boudier, repackaged by Joris Meys
location: plugins/image_edge.jar

For more information about the IMCF please have a look at our website:

Imaging Core Facility of the Biozentrum, University of Basel, Switzerland.