Difference between revisions of "TopoJ"

(Add TopoJ)
 
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[[Image:TopoJ-Sintered_Alumina.jpg]]
 
[[Image:TopoJ-Sintered_Alumina.jpg]]
 
To see the surface structure, use ''Plugins>3D Viewer'':
 
 
[[Image:TopoJ-Volume_Rendering.jpg]]
 
  
 
== Compute Topography ==
 
== Compute Topography ==
  
To computer the Topography, call ''Analyze>TopoJ>Compute Topography'':
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To compute the Topography, call ''Analyze>TopoJ>Compute Topography'':
  
 
[[Image:TopoJ-Dialog.jpg]]
 
[[Image:TopoJ-Dialog.jpg]]

Revision as of 07:54, 31 August 2010

TopoJ (ImageJ)
Author David Hovis
Maintainer David Hovis
Source in gitweb
Initial release 18/08/2010
Latest version 18/08/2010
Development status stable
Category Category:Plugins


The TopoJ plugins help you analyze surfaces of bright objects in image stacks. You can load an example via File>Open Samples>SinteredAlumina (2.6MB):

TopoJ-Sintered Alumina.jpg

Compute Topography

To compute the Topography, call Analyze>TopoJ>Compute Topography:

TopoJ-Dialog.jpg

For the sample image, a window value of 5 is appropriate. The result looks like this:

TopoJ-Computed Topography.jpg

Remove Slope

To remove the overall slope of the surface, click on the Analyze>TopoJ>Remove Slope menu item:

TopoJ-Remove Slope.jpg