Difference between revisions of "TopoJ"

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{{Infobox Plugin
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{{ComponentStats:sc.fiji:TopoJ_}}The TopoJ plugins help you analyze surfaces of bright objects in image stacks. You can load an example via {{bc | File | Open Samples | SinteredAlumina (2.6MB)}}:
| software              = ImageJ
 
| name                  = TopoJ
 
| maintainer            = David Hovis
 
| author                = David Hovis
 
| source                = [http://pacific.mpi-cbg.de/cgi-bin/gitweb.cgi?p=fiji.git;a=blob;f=src-plugins/TopoJ_/Compute_Topography.java;hb=refs/heads/master in gitweb]
 
| released              = 18/08/2010
 
| latest version        = 18/08/2010
 
| status                = stable
 
| category              = [[:Category:Plugins]]
 
}}
 
 
 
The TopoJ plugins help you analyze surfaces of bright objects in image stacks. You can load an example via ''File>Open Samples>SinteredAlumina (2.6MB)'':
 
  
 
[[Image:TopoJ-Sintered_Alumina.jpg]]
 
[[Image:TopoJ-Sintered_Alumina.jpg]]
 
To see the surface structure, use ''Plugins>3D Viewer'':
 
 
[[Image:TopoJ-Volume_Rendering.jpg]]
 
  
 
== Compute Topography ==
 
== Compute Topography ==
  
To computer the Topography, call ''Analyze>TopoJ>Compute Topography'':
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To compute the Topography, call {{bc | Analyze | TopoJ | Compute Topography}}:
  
 
[[Image:TopoJ-Dialog.jpg]]
 
[[Image:TopoJ-Dialog.jpg]]
  
For the sample image, a window value of ''5'' is appropriate. The result looks like this:
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The result looks like this:
  
 
[[Image:TopoJ-Computed_Topography.jpg]]
 
[[Image:TopoJ-Computed_Topography.jpg]]
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== Remove Slope ==
 
== Remove Slope ==
  
To remove the overall slope of the surface, click on the ''Analyze>TopoJ>Remove Slope'' menu item:
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To remove the overall slope of the surface, click on the {{bc | Analyze | TopoJ | Remove Slope}} menu item:
  
 
[[Image:TopoJ-Remove_Slope.jpg]]
 
[[Image:TopoJ-Remove_Slope.jpg]]

Latest revision as of 21:08, 3 June 2017

TopoJ
Project Fiji
URL https://imagej.net/TopoJ
Source on GitHub
License GPLv3
Release 2.0.1
Date Sat Apr 29 23:12:49 CDT 2017
Development status Stable
Support status None
Team
Founders David Hovis
Leads -
Developers -
Debuggers -
Reviewers -
Support -
Maintainers Curtis Rueden
Contributors David Hovis, Johannes Schindelin, Mark Hiner

The TopoJ plugins help you analyze surfaces of bright objects in image stacks. You can load an example via File  › Open Samples  › SinteredAlumina (2.6MB):

TopoJ-Sintered Alumina.jpg

Compute Topography

To compute the Topography, call Analyze  › TopoJ  › Compute Topography:

TopoJ-Dialog.jpg

The result looks like this:

TopoJ-Computed Topography.jpg

Remove Slope

To remove the overall slope of the surface, click on the Analyze  › TopoJ  › Remove Slope menu item:

TopoJ-Remove Slope.jpg