Difference between revisions of "TopoJ"

(Fix link)
Line 4: Line 4:
 
| maintainer            = David Hovis
 
| maintainer            = David Hovis
 
| author                = David Hovis
 
| author                = David Hovis
| source                = [http://pacific.mpi-cbg.de/cgi-bin/gitweb.cgi?p=fiji.git;a=blob;f=src-plugins/TopoJ_/Compute_Topography.java;hb=refs/heads/master in gitweb]
+
| source                = [http://fiji.sc/cgi-bin/gitweb.cgi?p=fiji.git;a=blob;f=src-plugins/TopoJ_/src/main/java/Compute_Topography.java in gitweb]
 
| released              = 18/08/2010
 
| released              = 18/08/2010
 
| latest version        = 18/08/2010
 
| latest version        = 18/08/2010

Revision as of 17:15, 16 July 2012

TopoJ (ImageJ)
Author David Hovis
Maintainer David Hovis
Source in gitweb
Initial release 18/08/2010
Latest version 18/08/2010
Development status stable
Category Category:Plugins


The TopoJ plugins help you analyze surfaces of bright objects in image stacks. You can load an example via File>Open Samples>SinteredAlumina (2.6MB):

TopoJ-Sintered Alumina.jpg

Compute Topography

To compute the Topography, call Analyze>TopoJ>Compute Topography:

TopoJ-Dialog.jpg

The result looks like this:

TopoJ-Computed Topography.jpg

Remove Slope

To remove the overall slope of the surface, click on the Analyze>TopoJ>Remove Slope menu item:

TopoJ-Remove Slope.jpg