Difference between revisions of "TopoJ"

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The TopoJ plugins help you analyze surfaces of bright objects in image stacks. You can load an example via ''File>Open Samples>SinteredAlumina (2.6MB)'':
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The TopoJ plugins help you analyze surfaces of bright objects in image stacks. You can load an example via ''File {{arrow}} Open Samples {{arrow}} SinteredAlumina (2.6MB)'':
  
 
[[Image:TopoJ-Sintered_Alumina.jpg]]
 
[[Image:TopoJ-Sintered_Alumina.jpg]]
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== Compute Topography ==
 
== Compute Topography ==
  
To compute the Topography, call ''Analyze>TopoJ>Compute Topography'':
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To compute the Topography, call ''Analyze {{arrow}} TopoJ {{arrow}} Compute Topography'':
  
 
[[Image:TopoJ-Dialog.jpg]]
 
[[Image:TopoJ-Dialog.jpg]]
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== Remove Slope ==
 
== Remove Slope ==
  
To remove the overall slope of the surface, click on the ''Analyze>TopoJ>Remove Slope'' menu item:
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To remove the overall slope of the surface, click on the ''Analyze {{arrow}} TopoJ {{arrow}} Remove Slope'' menu item:
  
 
[[Image:TopoJ-Remove_Slope.jpg]]
 
[[Image:TopoJ-Remove_Slope.jpg]]

Revision as of 14:37, 21 August 2015

TopoJ (ImageJ)
Author David Hovis
Maintainer David Hovis
Source on GitHub
Initial release 18/08/2010
Latest version 18/08/2010
Development status stable
Category Category:Plugins


The TopoJ plugins help you analyze surfaces of bright objects in image stacks. You can load an example via File › Open Samples › SinteredAlumina (2.6MB):

TopoJ-Sintered Alumina.jpg

Compute Topography

To compute the Topography, call Analyze › TopoJ › Compute Topography:

TopoJ-Dialog.jpg

The result looks like this:

TopoJ-Computed Topography.jpg

Remove Slope

To remove the overall slope of the surface, click on the Analyze › TopoJ › Remove Slope menu item:

TopoJ-Remove Slope.jpg