Difference between revisions of "Temporal-Color Code"
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[[Image:K_temporal_color_coded_listeria.png | 256px | Temporal-Color Coded]] | [[Image:K_temporal_color_coded_listeria.png | 256px | Temporal-Color Coded]] | ||
{{-}} | {{-}} | ||
| − | {{Infobox | + | {{Infobox |
| name = Temporal-Color Code | | name = Temporal-Color Code | ||
| software = Fiji | | software = Fiji | ||
| − | | author = [http://cmci.embl.de Kota Miura], | + | | author = [http://cmci.embl.de Kota Miura], {{Person|Schindelin}} |
| maintainer = [http://cmci.embl.de Kota Miura] ([mailto:miura@embl.de]) | | maintainer = [http://cmci.embl.de Kota Miura] ([mailto:miura@embl.de]) | ||
| − | | source = | + | | source = {{GitHub|repo=fiji|path=plugins/Scripts/Image/Hyperstacks/Temporal-Color_Code.ijm}} |
| released = 29 Nov 2010 | | released = 29 Nov 2010 | ||
| latest version = 29 Nov 2010 | | latest version = 29 Nov 2010 | ||
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== Temporal-Color Code == | == Temporal-Color Code == | ||
| − | Generates a temporal-color coded XY 2D image from HyperStack. Works with both 2D time series and 3D time series. | + | Generates a temporal-color coded XY 2D image (above right) from HyperStack (above left). Works with both 2D time series and 3D time series. |
;Be sure to set the dimensional sizes (especially Z and T) properly with Image/Properties. | ;Be sure to set the dimensional sizes (especially Z and T) properly with Image/Properties. | ||
| + | |||
| + | = Work Flow = | ||
| + | |||
| + | With a hyperstack window activated (at the most front among other images), select '''Image/Hyperstacks/Temporal-Color''' Code. | ||
| + | |||
| + | In dialog window, select a LUT from drop down menu. Selected LUT will be used for color coding the time. You could also set the range of frames to be coded. Default is full frames. There is also an option check-box for generating color-scale bar in separate window. This will show correspondence between color and frame number in the color coded image. | ||
[[Category:Plugins]] | [[Category:Plugins]] | ||
[[Category:Color processing]] | [[Category:Color processing]] | ||
Latest revision as of 12:23, 8 October 2015
| Temporal-Color Code (Fiji) | |
|---|---|
| Author | Kota Miura, Johannes Schindelin |
| Maintainer | Kota Miura ([1]) |
| Source | on GitHub |
| Initial release | 29 Nov 2010 |
| Latest version | 29 Nov 2010 |
| Development status | beta |
Temporal-Color Code
Generates a temporal-color coded XY 2D image (above right) from HyperStack (above left). Works with both 2D time series and 3D time series.
- Be sure to set the dimensional sizes (especially Z and T) properly with Image/Properties.
Work Flow
With a hyperstack window activated (at the most front among other images), select Image/Hyperstacks/Temporal-Color Code.
In dialog window, select a LUT from drop down menu. Selected LUT will be used for color coding the time. You could also set the range of frames to be coded. Default is full frames. There is also an option check-box for generating color-scale bar in separate window. This will show correspondence between color and frame number in the color coded image.
