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Shape Filter

372 bytes added, 17:26, 13 December 2018
Fix "list of update sites" link
| software = ImageJ/Fiji
| name = Shape Filter Plugin
| author = Thorsten Wagner{{Person|Twagner}}| maintainer = Thorsten Wagner (wagner@biomedical-imaging.de){{Person|Twagner}}
| filename = shape_filter_x.y.z.jar [https://github.com/thorstenwagner/ij-shape-filter/releases/latest [1]]
| source = Github [https://github.com/thorstenwagner/ij-shape-filter [2]]
| latest version = v1.4.0 2 (21 Sep 201514 July 2016)
| status = active
= General Description =
The ImageJ Shape Filter Plugin uses use the [https://github.com/thorstenwagner/ij-blob [ij-blob]] library to characterize and filter objects in binary scenes by its shape. Therefore, several features are calculated as shown below.
[[File:Shape Filter GUI.png|200px|thumb]]
 
If you like to cite the Shape Filter plugin in a scientific publication, please cite:
 
Wagner, T and Lipinski, H 2013. IJBlob: An ImageJ Library for Connected Component Analysis and Shape Analysis. Journal of Open Research Software 1(1):e6, DOI: http://dx.doi.org/10.5334/jors.ae
 
 
== Shape Features ==
* '''Min. Feret Diameter''': the minimum distance between the two parallel tangents touching the particle outline in all directions.
* '''Max. Inscr. Circle Diameter''': The diameter of the maximum inscribed circle.
* '''Area eq. circle diameter''': Equivalent circle diameter <math>2\sqrt{\frac{A}{\pi}}</math>* '''Long Side Minimum Bounding Rectangle'''(<math>L</math>): The larger side of the minimum bounding rectangle.* '''Short Side Minimum Bounding Rectangle'''(<math>S</math>): The smaller side of the minimum bounding rectangle.
* '''Aspect Ratio''': Defined as <math>L/S</math>
* '''Area to Perimeter Ratio''': Defined as <math>A/P</math>
=Installation=
You could simply use our update site "[http://fiji.sc/List_of_update_sites biomedgroup]{{ListOfUpdateSites|Biomedgroup}}" to install the shape filter plugin.
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