File list
This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 14:34, 28 September 2015 | GreenYellowSimultColourIllusion.png (file) |  |
4 KB | GreenYellowSimultColourIllusion.png the central circles are actually the same colour. But they dont look like they are. | 1 |
| 02:38, 31 July 2015 | Adler et al-2010-Cytometry Part A.pdf (file) |  |
599 KB | refutation of overlap coefficient | 1 |
| 09:46, 30 July 2015 | Scatterplotcoloc.jpg (file) |  |
12 KB | coloc scatterplot example from Tony Collins' WCIF site | 1 |
| 09:34, 30 July 2015 | ColocQuadrants.jpg (file) |  |
7 KB | from tony colling site , a nice graphice showing how thresholds split the scatter plot into 4 areas, which are used to calculate different measurement. from http://www.uhnresearch.ca/facilities/wcif/imagej/colour27.jpg | 1 |
| 09:17, 30 July 2015 | SpiralsRGY.png (file) |  |
20 KB | output of new spirals macro, in red and green for the blind | 1 |
| 09:16, 30 July 2015 | Ch1coloc.gif (file) |  |
46 KB | channel 1 coloc example image | 1 |
| 09:16, 30 July 2015 | Ch2coloc.jpg (file) |  |
16 KB | channel 2 coloc example image | 1 |
| 05:50, 29 April 2014 | Wu2010-crosscorrelationPPI Coloc.pdf (file) | |
2.36 MB | maths description of protein-protein proximity index, variant of image cross correlation spectroscopy coloc approach. | 1 |
| 08:19, 28 November 2011 | LietAlColoc.pdf (file) | |
791 KB | Lis method for colocalization analysis. | 1 |
| 15:20, 22 August 2011 | ColocBlur.gif (file) |  |
63 KB | from svi | 1 |
| 15:20, 22 August 2011 | ColocBGnoise.gif (file) |  |
94 KB | from svi | 1 |
| 15:19, 22 August 2011 | 500px-CrossTalkBleedThrough.jpg (file) |  |
18 KB | JYT made it | 1 |
| 15:19, 22 August 2011 | 500px-ColocalizationSampling.png (file) |  |
29 KB | JYT made it | 1 |
| 04:37, 14 June 2010 | Series Labeler Screen shot.png (file) |  |
97 KB | screen shot of sereis labeler in action with its non modal GUI , preview and relevant IJ gui bits also shown for colors and fonts. | 1 |
| 05:06, 16 July 2009 | NulceiDAPIconfocalSegmentationResults.png (file) |  |
437 KB | segmentation results for watershed tutoirial | 1 |
| 04:57, 16 July 2009 | NulceiDAPIconfocalAnalyzeParticles.png (file) |  |
88 KB | NulceiDAPIconfocalAnalyzeParticles.png is how to drive the "analyze particle"s built in imagej function in fiji . You need to se a threshold first, even for a "binary" image (because its not really binary, its still 8 bit or whatever) | 1 |
| 06:02, 15 July 2009 | NucleiDAPIconfocalWatershed.png (file) |  |
5 KB | NucleiDAPIconfocalWatershed.png is NucleiDAPIconfocal after smoothing, thresholding and watershed | 1 |
| 05:52, 15 July 2009 | NucleiDAPIconfocalAutoDefaultThresh.png (file) |  |
5 KB | Image:NucleiDAPIconfocalGauss3pxSigma.pngI is iDAPIconfocal.png after smoothing and auto threshold | 1 |
| 05:39, 15 July 2009 | NucleiDAPIconfocalGauss3pxSigma.png (file) |  |
124 KB | NucleiDAPIconfocalGauss3pxSigma.png is NucleiDAPIconfocal.png after gaussian blue or 3 pixel sigma | 1 |
| 05:19, 15 July 2009 | NucleiDAPIconfocal.png (file) |  |
239 KB | NucleiDAPIconfocal.png is a DAPI nuclear staining fluorescence micrograph of a cell dense, developing tissue taken with a confocal laser scanning microscope. | 1 |
| 07:20, 10 July 2009 | Fiji-ELMI2009.pdf (file) | |
3.75 MB | Dan White FIJI presentation from the ImageJ tutorial sessions at ELMI 2009 in dlasgow | 1 |
| 05:00, 5 June 2009 | ColocBleedThru.png (file) |  |
257 KB | fluorescence emission bleed through gives misleading results, as the signal from one channel appears also in the other! RThis looks like coloclaization! | 1 |
| 04:13, 5 June 2009 | ColocWithROI.png (file) |  |
293 KB | coloc with roi gives better results! as you dont analyse uninteresting background. | 1 |
| 03:50, 5 June 2009 | BadOffsetConfusesCostesAutoThreshold.png (file) |  |
321 KB | high offset in this dataset confuses the Costes autothreshold into setting one threshold below the lowest pixel intensity in the green channel. | 1 |
| 12:14, 4 June 2009 | ColocTestResult.png (file) |  |
377 KB | coloc test result | 1 |
| 12:13, 4 June 2009 | ColocTestGUI2.png (file) |  |
25 KB | colcoc test Costes parameters GUI | 1 |
| 12:12, 4 June 2009 | ColocTestGUI1.png (file) |  |
158 KB | coloc test GUI, select channels | 1 |
| 10:12, 4 June 2009 | Manders.pdf (file) | |
1.12 MB | manders et al paper describing split correlation coefficents foir colocalisation | 1 |
| 10:11, 4 June 2009 | Costes etalColoc.pdf (file) | |
449 KB | the costes et al coloc paper describing the auto thresholding and statistical significance by randomisation test | 1 |
| 09:08, 4 June 2009 | Coloc1b.png (file) |  |
164 KB | coloc threshold GUI settings | 1 |
| 09:07, 4 June 2009 | Coloc2.png (file) |  |
302 KB | coloc resuult showing bad offset and nonsense resuts from colco threshold due to bad images. | 1 |
| 09:05, 4 June 2009 | Coloc1.png (file) |  |
331 KB | coloc threshold command in menu | 1 |
| 08:41, 4 June 2009 | SplitChannels.png (file) |  |
231 KB | how to split channels of an rgb image or a multi channel composite image. | 1 |
| 09:30, 3 June 2009 | OffsetProblem.png (file) |  |
290 KB | blue and green channels of fluorescentcells.tiff with histograms, showing that there is a high consistent background in the green channel- a detector offset setting problem . | 1 |
| 09:13, 3 June 2009 | SaturatedDAPIHistogram.png (file) |  |
131 KB | added yellow highlights | 2 |
| 10:21, 2 June 2009 | LossyJPEGCompressionArtifacts1.png (file) |  |
22 KB | lossy jpeg compression artifacts in a tiff file fluorescentcells.tiff | 1 |
| 10:09, 2 June 2009 | SplitColourChannels.png (file) |  |
367 KB | image - color - split channels | 1 |
| 09:28, 2 June 2009 | OpenFluoCells.png (file) |  |
311 KB | how to open the fluorescentcells.tif sample dataset | 1 |
| 09:17, 2 June 2009 | ImageProperties.png (file) |  |
202 KB | added yellow mark for menu item | 2 |
| 02:36, 29 May 2009 | SpatialCalibrationSS2.png (file) |  |
478 KB | spatial calibration tutorial screen shot 2. yellow shows important stuff. | 1 |
| 02:21, 29 May 2009 | SpatialCalibrationSS1.png (file) |  |
620 KB | spatial calibration tutorial screen shot 1, showing line selection on the stage micrometer image, and the correct settings in the set scale tool with global turned on. Yellow highliths important stuff. | 1 |
| 10:31, 28 May 2009 | Disc60xwithoutoptovar.gif (file) |  |
120 KB | Image of a stopped spinning disk confocal scan head from Yokogawa, through a 60 x objective lens on an andor camera, on a n olympus ix71 stand. the holes are about 50 micron in dimeter and about 250 microns apart (but remeber this is the image of the disk | 1 |
| 10:22, 28 May 2009 | 60Xnooptovar.gif (file) |  |
253 KB | image of a stage micrometer through a 60x objective on an andor spinning disk confocal microscope in transmitted light mode on an Olympus IX71 stand. | 1 |
| 10:12, 16 October 2008 | QuantitativeImagingForColocalization0408b.pdf (file) | |
697 KB | slides from mpi-cbg image processing course, quantitative imaging for colocalisation analysis | 1 |
| 10:04, 16 October 2008 | White QuantitativeColocAnalysis0408a.pdf (file) | |
1.23 MB | slide from MPI-CBG Image Processing course on quantitative colocalisation analysis for microscopy images. | 1 |
