Difference between revisions of "SNT: Analysis"

(Sholl Analysis)
(Sholl Analysis)
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=Sholl Analysis=
 
=Sholl Analysis=
[[Image:Snt-Sholl-Coarse-Intructions.png|right|thumb|300px|Initiating Sholl Analysis: First method]]
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[[Image:Snt-Sholl-Coarse-Intructions.png|right|thumb|200px|Initiating Sholl Analysis: coarse method]]
 
To initiate [https://imagej.net/Sholl_Analysis Sholl Analysis], you must select a focal point. You can do it coarsely by right-clicking near a node and choosing ''Sholl Analysis at Nearest Node'' from the contextual menu (Shortcut: {{key|Alt}} + {{key|Shift}} + {{key|A}}.   
 
To initiate [https://imagej.net/Sholl_Analysis Sholl Analysis], you must select a focal point. You can do it coarsely by right-clicking near a node and choosing ''Sholl Analysis at Nearest Node'' from the contextual menu (Shortcut: {{key|Alt}} + {{key|Shift}} + {{key|A}}.   
  
{{clear}}
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Alternatively, for precise positioning of the center of analysis:
 
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# Mouse over the path of interest. Press {{key|G}} to activate it.
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# Press {{key|Alt}}+{{key|Shift}} to select a node along the path.
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# Press {{key|Alt}}+{{key|Shift}}+{{key|A}} to start analysis.
 
<div align="center">
 
<div align="center">
 
<ul>  
 
<ul>  
<li style="display:inline-block;"> [[Image:Snt-Sholl-Precise-Step-1.png|none|thumb|325px|1) Select path]] </li>
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<li style="display:inline-block;"> [[Image:Snt-Sholl-Precise-Step-1.png|none|thumb|200px|1) Select path]] </li>
<li style="display:inline-block;"> [[Image:Snt-Sholl-Precise-Step-2.png|none|thumb|325px|2) Snap cursor to node along path]] </li>
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<li style="display:inline-block;"> [[Image:Snt-Sholl-Precise-Step-2.png|none|thumb|200px|2) Snap cursor to node]] </li>
<li style="display:inline-block;"> [[Image:Snt-Sholl-Precise-Step-3.png|none|thumb|325px|3) After pressing "Alt+Shift+A"]] </li>
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<li style="display:inline-block;"> [[Image:Snt-Sholl-Precise-Step-3.png|none|thumb|350px|3) Press "Alt+Shift+A"]] </li>
 
</ul>
 
</ul>
 
</div>
 
</div>

Revision as of 19:08, 12 December 2019

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Sholl Analysis

Initiating Sholl Analysis: coarse method

To initiate Sholl Analysis, you must select a focal point. You can do it coarsely by right-clicking near a node and choosing Sholl Analysis at Nearest Node from the contextual menu (Shortcut: Alt + Shift + A.

Alternatively, for precise positioning of the center of analysis:

  1. Mouse over the path of interest. Press G to activate it.
  2. Press Alt+ Shift to select a node along the path.
  3. Press Alt+ Shift+A to start analysis.
  • 1) Select path
  • 2) Snap cursor to node
  • 3) Press "Alt+Shift+A"


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