Difference between revisions of "Presentations"
(→Workshops: Add segmentation and macro workshops) |
(List the workshop presenter as simply "LOCI". Easier to read, and hopefully more future-proof.) |
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| Intro to Fiji | | Intro to Fiji | ||
| [http://workshops.imagej.net/fiji-intro.pdf slides (PDF)], [http://workshops.imagej.net/fiji-intro.odp slides (ODP)] | | [http://workshops.imagej.net/fiji-intro.pdf slides (PDF)], [http://workshops.imagej.net/fiji-intro.odp slides (ODP)] | ||
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| - | | - | ||
| − | | | + | | [[LOCI]] |
| Segmentation in Fiji | | Segmentation in Fiji | ||
| [http://workshops.imagej.net/fiji-segmentation.pdf slides (PDF)], [http://workshops.imagej.net/fiji-segmentation.odp slides (ODP)] | | [http://workshops.imagej.net/fiji-segmentation.pdf slides (PDF)], [http://workshops.imagej.net/fiji-segmentation.odp slides (ODP)] | ||
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| - | | - | ||
| − | | | + | | [[LOCI]] |
| Macros in Fiji | | Macros in Fiji | ||
| [http://workshops.imagej.net/fiji-macros.pdf slides (PDF)], [http://workshops.imagej.net/fiji-macros.odp slides (ODP)] | | [http://workshops.imagej.net/fiji-macros.pdf slides (PDF)], [http://workshops.imagej.net/fiji-macros.odp slides (ODP)] | ||
Revision as of 14:10, 21 October 2015
Contents
Talks
| Date | Presenter | Title | Resources | |
|---|---|---|---|---|
| 2015 ImageJ Conference | ||||
| Keynotes | ||||
| 2015-Sep-03 | Wayne Rasband | Introduction to ImageJ | ||
| 2015-Sep-03 | Curtis Rueden | ImageJ2 and Fiji: The ImageJ2 platform, and the Fiji distribution of ImageJ | ||
| 2015-Sep-04 | Mark Tsuchida | Microscope control and image acquisition with Micro-Manager | ||
| 2015-Sep-04 | Florian Jug | Getting stuff done – Software synergy with ImageJ + KNIME | ||
| Featured presentations | ||||
| 2015-Sep-04 | Pariksheet Nanda | Sharing the value of software freedom with non-programmers | ||
| 2015-Sep-04 | Tiago Ferreira | Alternative approaches for neuronal morphometry | ||
| 2015-Sep-03 | John Bogovic | The Thin Plate Spline method for smooth non-rigid transformations | ||
| Lightning talks | ||||
| 2015-Sep-04 | Anne Alerding | Quantifying soybean stem tissues using common tools in ImageJ & Fiji | ||
| 2015-Sep-03 | Fabrice de Chaumont | Yet another ImageJ friend: Icy | ||
| 2015-Sep-03 | Jesus Manuel Falagan | Plugins to import, visualize, process & write astronomical FITS files | ||
| 2015-Sep-04 | Bill Heeschen | Quantitative characterization of cellular irregularities in extruded polystyrene foam using digital image processing and analysis | ||
| 2015-Sep-03 | Mark Hiner | ImageJ+MATLAB: Reunited | ||
| 2015-Sep-04 | Irene Landrum | SWAMP – a no-cost, open, high-performance computing platform for continuous software assurance | ||
| 2015-Sep-03 | Melissa Linkert | OME Bio-Formats: 10 years of proprietary image data | ||
| 2015-Sep-03 | Michael Majurski | Accurate and scalable Microscopy Image Stitching Tool (MIST) | ||
| 2015-Sep-04 | Benjamin Nanes | Slide Set: Simplified batch processing with ImageJ2 | ||
| 2015-Sep-04 | Brian Northan | Flexible Deconvolution using ImageJ Ops | ||
| 2015-Sep-04 | Stephan Saalfeld | Seamless stitching without blending | ||
| 2015-Sep-04 | Raghavender Sahdev | TimeLapseReg – An ImageJ plugin for drift correction of video sequence in time-lapse microscopy | ||
| 2015-Sep-04 | Benjamin Schmid | Real-time multi-view deconvolution of time-lapse data on the GPU | ||
| 2015-Sep-04 | Amitabh Verma | Acquisition, processing & re-processing using OpenPolScope plugin for Micro-Manager | ||
| 2015-Sep-04 | Thorsten Wagner | NanoTrackJ – An open-source multi-modal size characterization tool for nanoparticle tracking analysis based on ImageJ | ||
| 2015-Sep-04 | Petr Walczysko | The Open Microscopy Environment (OME) | ||
| 2015-Sep-04 | Jay Warrick | JEX – a platform for data management and batch processing with standard tools | ||
| 2015-Sep-03 | Aryeh Weiss | Automated processing of telomeres with ImageJ and R | ||
| 2012 ImageJ Conference | ||||
| 2012-Oct-24 | Curtis Rueden | ImageJ2: Current Status and Future Directions | ||
| Bioimage analysis workshop - ISBI 2012 | ||||
| 2012-Apr-30 | Curtis Rueden | ImageJ2 – ImageJ for the Next Generation of Biological Image Data | ||
| 2010 ImageJ Conference | ||||
| 2010-Oct-27 | Curtis Rueden | ImageJDev: Next Generation ImageJ | ||
| Other presentations | ||||
| 2015-Jan-12 | Johannes Schindelin | The ImageJ Ops Framework: Image processing made easy | ||
Workshops
| Date | Presenter | Title | Resources | |
|---|---|---|---|---|
| 2015 ImageJ Conference | ||||
| 2015-Sep-03 | Aryeh Weiss | An introduction to digital image processing | ||
| 2015-Sep-03 | Jan Brocher | Image processing, feature extraction and analysis using the BioVoxxel Toolbox | ||
| 2015-Sep-03 | Tiago Ferreira | Scripting with BAR | ||
| 2015-Sep-03 | Dominik Lindner Petr Walczysko |
The OMERO platform for management of microscopy data and beyond | ||
| 2015-Sep-03 | Fabrice de Chaumont Stephane Dallongeville |
Hands on Icy ! | ||
| 2015-Sep-03 | Matt McCormick | SimpleITK | ||
| 2015-Sep-04 | Curtis Rueden Brian Northan |
ImageJ2 scripts: Parameters + ImageJ Ops | ||
| 2015-Sep-04 | Marcel Austenfeld | Statistical image analysis and reproducible reports with ImageJ and R | ||
| Other presentations | ||||
| - | LOCI | Intro to Fiji | slides (PDF), slides (ODP) | |
| - | LOCI | Segmentation in Fiji | slides (PDF), slides (ODP) | |
| - | LOCI | Macros in Fiji | slides (PDF), slides (ODP) | |
Posters
| Date | Presenter | Title | Resources | |
|---|---|---|---|---|
| 2015 ImageJ Conference | ||||
| 2015-Sep-03 | Ignacio Arganda-Carreras | Trainable Weka Segmentation: a tool for machine-learning-based image segmentation | ||
| 2015-Sep-03 | Jan Brocher | The BioVoxxel Toolbox | ||
| 2015-Sep-03 | Olaya Fernandez-Gayol | Using the wrMTrck plugin to analyze the Morris Water maze in mice | ||
| 2015-Sep-03 | David Logan | The ImageJ-CellProfiler Interface | ||
| 2015-Sep-03 | Tobias Pietzsch | BigDataViewer—Visualization and Image Processing for Terabyte Data Sets | ||
| 2015-Sep-03 | Stephan Saalfeld | ImgLib2 for visualization and generic image processing | ||
| 2015-Sep-03 | Raghavender Sahdev | TimeLapseReg – An ImageJ plugin for drift correction of video sequence in time-lapse microscopy | ||
| 2015-Sep-03 | Thorsten Wagner | Tools and methods of the Biomedical Imaging Group for ImageJ: An Overview | ||
